MD13G1239300.v1.1

Protein CHLOROPLAST IMPORT APPARATUS 2-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
24355628 .. 24359864
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1239300.v1.1.491

Sequence Viewer

Length: 1311 bp
ATGTCTTCGTGCCTAAGCGGCGGCGGAAGAACCTATGCCTTCGAGCTTGACATAGTTAAATCGCCGTCCACATCAACCTTCACCTCCACCTCTTCTCCCTCCTCAACTCTCTCGGAATCCAGCAACTCCGGCCTCGCAATCTCGACACGAAAACCTCGTACCCCCCGAAAACGGCCCAACCAAACATACAATGAAGCCGCCGCATTGCTCTCTACAGCGTACCCCAACATCTTCTCCTCCAAAAGTTTCACAAATCCCAGAAAATTCACCAAACCTCACGACTCCTTCTTCGACCAATCCGCGGAGTTGCTCCTGCCGTTCAGAGTCATCGAGGCCGAAAACTCCGGGTTTTTGCTCCACCACCAACTCCAGGAAAAATCCAGTTCCCGATTCGAGCCCAAGTCCCTGAATTCGTTCGAGAAGCCGTGCCGGAGTCCGGGGGAATTCGAGTCCCCACCGAATTGCAATTCCGATTCCATGGAGTTGAGTGACGGGTATAATTTCCAAGAGGAAGATTTCGATGCGGAGTCGATTCTCGACGAGGAAATTGAAGAGGGGATTGATAGCATCATGGGAAGTATGAGTGTGAACATGGACTTGGAGGAGGAGTCTAACAATGGCGGAGGTGGGCAAATGAAGAATTCGAATCCAAAACCGAATTCGACTTGGAATTCCTGTTATGGGTACCCAATAGGGCTCGGATTTGGCGGGAAATTCGAGTTCGGGTCGAGAAGAGGAGGAGTGAGGCCGTTGAGGCACGTCGACGAGGGGAACTGGTGGAGTTTTCCCACCGTAGATGTTCTTGAAATCTCGCCCAGATTCAACAAATCTCTGTCATCTTCCGCCCCGGCTCCGGCAGCGGCCACAGCCAAGAAGAAGAAGAAGAAGAAGGTGGAGAAACTGTCGGTCTTGGAATCGAGAATCACAGCGGAATCGCCGAAGGAGGCGAGTCCGATTCCCAAGCCCCCGGCGGAGGAAGAGCCCGGGCTGAAGCTGAAGTTGGACTACGACGACGTTTTGAATGCCTGGTCGGACAAAGCGTCGCCGTTTTCGGAGGAAATGCCGGGATCTGATGCGGCGGGGAATGATGTCGCTGCCAGGCTAGCGCATATTGATTTATTCTCAGACGTCGGAGGATTGAGGGAGGCTAGCGTCTTGCGCTACAAGGAGAAACGTCGTACTCGCCTCTTCACTAAGAAGATCAGATACCAAGTTAGAAAAGTCAATGCCGATCAACGACCCAGAATGAAGGGTCGATTTGTTAGAAGGCCACATTCTAGCACAAATGCTCAAAGACAAAAGGAAATATGA

Protein Analysis

437

Amino Acids

48.39

Weight (kDa)

8.65

Isoelectric Point (pI)

60.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 381 - 423 8.6e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1131
Acc65I GGTACC 1 cut(s) 684
AccB1I GGYRCC 1 cut(s) 684
AccI GTMKAC 1 cut(s) 762
AccII CGCG 1 cut(s) 302
AclWI GGATC 1 cut(s) 1075
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 7 cut(s) 263, 409, 443, 640, 658, 670, 713
AcuI CTGAAG 2 cut(s) 1010, 1016
AcyI GRCGYC 1 cut(s) 1128
AfaI GTAC 4 cut(s) 160, 221, 686, 1180
AfiI CCNNNNNNNGG 7 cut(s) 171, 301, 370, 436, 681, 853, 973
AgsI TTSAA 4 cut(s) 551, 806, 823, 1021
AhdI GACNNNNNGTC 1 cut(s) 1039
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 3 cut(s) 369, 1025, 1097
AjuI GAANNNNNNNTTGG 6 cut(s) 581, 613, 643, 675, 983, 1015
AluBI AGCT 2 cut(s) 46, 994
AluI AGCT 2 cut(s) 46, 994
AlwI GGATC 1 cut(s) 1075
Ama87I CYCGRG 1 cut(s) 983
AoxI GGCC 6 cut(s) 130, 173, 333, 746, 861, 1268
ApeKI GCWGC 2 cut(s) 857, 1094
ApoI RAATTY 7 cut(s) 263, 409, 443, 640, 658, 670, 713
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 413
Asp718I GGTACC 1 cut(s) 684
AspLEI GCGC 2 cut(s) 1108, 1161
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 7 cut(s) 346, 438, 848, 968, 984, 985, 1065
AsuHPI GGTGA 2 cut(s) 73, 259
AsuII TTCGAA 1 cut(s) 644
AsuNHI GCTAGC 2 cut(s) 1102, 1148
AvaI CYCGRG 1 cut(s) 983
BanI GGYRCC 1 cut(s) 684
BanII GRGCYC 3 cut(s) 399, 699, 984
BarI GAAGNNNNNNTAC 4 cut(s) 989, 1021, 1190, 1222
BbvI GCAGC 2 cut(s) 869, 1081
BceAI ACGGC 6 cut(s) 49, 188, 301, 409, 733, 1030
BciT130I CCWGG 3 cut(s) 371, 1027, 1099
BcnI CCSGG 7 cut(s) 346, 438, 848, 968, 984, 985, 1065
BfaI CTAG 3 cut(s) 1103, 1149, 1278
BfmI CTRYAG 1 cut(s) 213
BglI GCCNNNNNGGC 2 cut(s) 18, 754
BisI GCNGC 8 cut(s) 19, 22, 198, 201, 858, 861, 1077, 1095
BlsI GCNGC 8 cut(s) 20, 23, 199, 202, 859, 862, 1078, 1096
BmeRI GACNNNNNGTC 1 cut(s) 1039
BmeT110I CYCGRG 1 cut(s) 983
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 686, 852
BmsI GCATC 3 cut(s) 511, 576, 1063
BmtI GCTAGC 2 cut(s) 1106, 1152
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 644
BpuMI CCSGG 7 cut(s) 346, 438, 848, 968, 984, 985, 1065
BsaHI GRCGYC 1 cut(s) 1128
BsaJI CCNNGG 6 cut(s) 300, 437, 477, 846, 966, 983
BsaXI ACNNNNNCTCC 8 cut(s) 79, 109, 218, 248, 593, 623, 887, 917
Bsc4I CCNNNNNNNGG 7 cut(s) 171, 301, 370, 436, 681, 853, 973
Bse1I ACTGG 2 cut(s) 381, 779
Bse3DI GCAATG 1 cut(s) 203
BseBI CCWGG 3 cut(s) 371, 1027, 1099
BseDI CCNNGG 6 cut(s) 300, 437, 477, 846, 966, 983
BseLI CCNNNNNNNGG 7 cut(s) 171, 301, 370, 436, 681, 853, 973
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 1137
BseNI ACTGG 2 cut(s) 381, 779
BseRI GAGGAG 6 cut(s) 91, 226, 617, 620, 750, 753
BseXI GCAGC 2 cut(s) 869, 1081
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 6 cut(s) 132, 175, 335, 748, 863, 1270
BshNI GGYRCC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 983
BsiSI CCGG 9 cut(s) 129, 345, 430, 437, 848, 854, 968, 984, 1064
BslFI GGGAC 2 cut(s) 388, 436
BslI CCNNNNNNNGG 7 cut(s) 171, 301, 370, 436, 681, 853, 973
BsmFI GGGAC 2 cut(s) 388, 436
BsmI GAATGC 1 cut(s) 1027
BsnI GGCC 6 cut(s) 132, 175, 335, 748, 863, 1270
BsoBI CYCGRG 1 cut(s) 983
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 399, 699, 984
Bsp143I GATC 3 cut(s) 1067, 1200, 1231
Bsp19I CCATGG 1 cut(s) 477
BspANI GGCC 6 cut(s) 132, 175, 335, 748, 863, 1270
BspCNI CTCAG 1 cut(s) 1136
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 686, 852
BspOI GCTAGC 2 cut(s) 1106, 1152
BspPI GGATC 1 cut(s) 1075
BspQI GCTCTTC 1 cut(s) 972
BspT104I TTCGAA 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 203
BsrI ACTGG 2 cut(s) 381, 779
BssECI CCNNGG 6 cut(s) 300, 437, 477, 846, 966, 983
BssMI GATC 3 cut(s) 1067, 1200, 1231
BssNI GRCGYC 1 cut(s) 1128
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 3 cut(s) 371, 1027, 1099
Bst4CI ACNGT 2 cut(s) 793, 903
Bst6I CTCTTC 5 cut(s) 97, 546, 727, 972, 1193
BstACI GRCGYC 1 cut(s) 1128
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 1104, 1150
BstDEI CTNAG 3 cut(s) 14, 1123, 1194
BstDSI CCRYGG 2 cut(s) 300, 477
BstFNI CGCG 1 cut(s) 302
BstHHI GCGC 2 cut(s) 1108, 1161
BstKTI GATC 3 cut(s) 1070, 1203, 1234
BstMBI GATC 3 cut(s) 1067, 1200, 1231
BstMWI GCNNNNNNNGC 7 cut(s) 18, 129, 754, 857, 866, 1103, 1158
BstNI CCWGG 3 cut(s) 371, 1027, 1099
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 869, 1081
BstX2I RGATCY 1 cut(s) 1067
BstYI RGATCY 1 cut(s) 1067
BsuRI GGCC 6 cut(s) 132, 175, 335, 748, 863, 1270
BtgI CCRYGG 2 cut(s) 300, 477
BtrI CACGTC 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 1104, 1150
CfoI GCGC 2 cut(s) 1108, 1161
Cfr13I GGNCC 1 cut(s) 174
Cfr42I CCGCGG 1 cut(s) 303
Cfr9I CCCGGG 1 cut(s) 983
CseI GACGC 2 cut(s) 1029, 1141
Csp6I GTAC 4 cut(s) 159, 220, 685, 1179
CviAII CATG 3 cut(s) 478, 571, 592
CviQI GTAC 4 cut(s) 159, 220, 685, 1179
DdeI CTNAG 3 cut(s) 14, 1123, 1194
DpnI GATC 3 cut(s) 1069, 1202, 1233
DpnII GATC 3 cut(s) 1067, 1200, 1231
DriI GACNNNNNGTC 1 cut(s) 1039
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 5 cut(s) 97, 546, 727, 972, 1193
Eam1105I GACNNNNNGTC 1 cut(s) 1039
EarI CTCTTC 5 cut(s) 97, 546, 727, 972, 1193
EciI GGCGGA 4 cut(s) 39, 636, 832, 986
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 3 cut(s) 399, 699, 984
Eco57I CTGAAG 2 cut(s) 1010, 1016
Eco88I CYCGRG 1 cut(s) 983
EcoRI GAATTC 5 cut(s) 409, 443, 640, 658, 670
EcoRII CCWGG 3 cut(s) 369, 1025, 1097
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 3 cut(s) 399, 699, 984
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 3 cut(s) 481, 574, 595
FaqI GGGAC 2 cut(s) 388, 436
FatI CATG 3 cut(s) 477, 570, 591
FauI CCCGC 2 cut(s) 701, 1072
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 8 cut(s) 19, 22, 198, 201, 858, 861, 1077, 1095
FriOI GRGCYC 3 cut(s) 399, 699, 984
Fsp4HI GCNGC 8 cut(s) 19, 22, 198, 201, 858, 861, 1077, 1095
FspBI CTAG 3 cut(s) 1103, 1149, 1278
GlaI GCGC 2 cut(s) 1107, 1160
GluI GCNGC 8 cut(s) 19, 22, 198, 201, 858, 861, 1077, 1095
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 6 cut(s) 132, 175, 335, 748, 863, 1270
HapII CCGG 9 cut(s) 129, 345, 430, 437, 848, 854, 968, 984, 1064
HgaI GACGC 2 cut(s) 1029, 1141
HhaI GCGC 2 cut(s) 1108, 1161
Hin1I GRCGYC 1 cut(s) 1128
Hin1II CATG 3 cut(s) 481, 574, 595
Hin6I GCGC 2 cut(s) 1106, 1159
HinP1I GCGC 2 cut(s) 1106, 1159
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HpaII CCGG 9 cut(s) 129, 345, 430, 437, 848, 854, 968, 984, 1064
HphI GGTGA 2 cut(s) 73, 259
Hpy166II GTNNAC 3 cut(s) 69, 589, 763
Hpy188III TCNNGA 8 cut(s) 142, 278, 387, 418, 536, 729, 803, 918
Hpy8I GTNNAC 3 cut(s) 69, 589, 763
Hpy99I CGWCG 8 cut(s) 542, 764, 767, 1013, 1016, 1045, 1133, 1179
HpyAV CCTTC 7 cut(s) 49, 88, 295, 883, 934, 1243, 1260
HpyCH4III ACNGT 2 cut(s) 793, 903
HpyCH4IV ACGT 4 cut(s) 759, 1014, 1128, 1174
HpyCH4V TGCA 1 cut(s) 465
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 129, 754, 857, 866, 1103, 1158
HpyF3I CTNAG 3 cut(s) 14, 1123, 1194
HpySE526I ACGT 4 cut(s) 759, 1014, 1128, 1174
Hsp92I GRCGYC 1 cut(s) 1128
Hsp92II CATG 3 cut(s) 481, 574, 595
HspAI GCGC 2 cut(s) 1106, 1159
KpnI GGTACC 1 cut(s) 688
KspI CCGCGG 1 cut(s) 303
Kzo9I GATC 3 cut(s) 1067, 1200, 1231
LguI GCTCTTC 1 cut(s) 972
LmnI GCTCC 3 cut(s) 315, 360, 856
Lsp1109I GCAGC 2 cut(s) 869, 1081
LweI GCATC 3 cut(s) 511, 576, 1063
MaeI CTAG 3 cut(s) 1103, 1149, 1278
MaeII ACGT 4 cut(s) 759, 1014, 1128, 1174
MaeIII GTNAC 1 cut(s) 488
MalI GATC 3 cut(s) 1069, 1202, 1233
MboI GATC 3 cut(s) 1067, 1200, 1231
MflI RGATCY 1 cut(s) 1067
MhlI GDGCHC 3 cut(s) 399, 699, 984
MlyI GAGTC 7 cut(s) 275, 333, 442, 458, 536, 617, 958
MmeI TCCRAC 3 cut(s) 981, 1011, 1111
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 3 cut(s) 302, 860, 929
MspI CCGG 9 cut(s) 129, 345, 430, 437, 848, 854, 968, 984, 1064
Mva1269I GAATGC 1 cut(s) 1027
MvaI CCWGG 3 cut(s) 371, 1027, 1099
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 7 cut(s) 18, 129, 754, 857, 866, 1103, 1158
NciI CCSGG 7 cut(s) 346, 438, 848, 968, 984, 985, 1065
NcoI CCATGG 1 cut(s) 477
NdeII GATC 3 cut(s) 1067, 1200, 1231
NheI GCTAGC 2 cut(s) 1102, 1148
NlaIII CATG 3 cut(s) 481, 574, 595
NlaIV GGNNCC 2 cut(s) 686, 852
NmuCI GTSAC 1 cut(s) 488
NspV TTCGAA 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 972
PcsI WCGNNNNNNNCGW 3 cut(s) 154, 163, 1037
PctI GAATGC 1 cut(s) 1027
PdmI GAANNNNTTC 1 cut(s) 413
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 8 cut(s) 20, 23, 199, 202, 859, 862, 1078, 1096
PleI GAGTC 7 cut(s) 275, 332, 441, 457, 535, 616, 957
PpsI GAGTC 7 cut(s) 275, 332, 441, 457, 535, 616, 957
Psp6I CCWGG 3 cut(s) 369, 1025, 1097
PspGI CCWGG 3 cut(s) 369, 1025, 1097
PspN4I GGNNCC 2 cut(s) 686, 852
PspPI GGNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 1067
RsaI GTAC 4 cut(s) 160, 221, 686, 1180
RsaNI GTAC 4 cut(s) 159, 220, 685, 1179
SacII CCGCGG 1 cut(s) 303
SalI GTCGAC 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 972
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 8 cut(s) 19, 22, 198, 201, 858, 861, 1077, 1095
Sau3AI GATC 3 cut(s) 1067, 1200, 1231
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 7 cut(s) 275, 333, 442, 458, 536, 617, 958
SduI GDGCHC 3 cut(s) 399, 699, 984
SfaNI GCATC 3 cut(s) 511, 576, 1063
SfcI CTRYAG 1 cut(s) 213
Sfr303I CCGCGG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 644
SgrBI CCGCGG 1 cut(s) 303
SgrDI CGTCGACG 1 cut(s) 761
SmaI CCCGGG 1 cut(s) 985
SrfI GCCCGGGC 1 cut(s) 985
SspMI CTAG 3 cut(s) 1103, 1149, 1278
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 793, 903
TaiI ACGT 4 cut(s) 762, 1017, 1131, 1177
TaqII GACCGA 1 cut(s) 895
TauI GCSGC 6 cut(s) 21, 24, 200, 203, 863, 1079
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 2 cut(s) 857, 1094
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 207, 650, 1262
TspMI CCCGGG 1 cut(s) 983
XapI RAATTY 7 cut(s) 263, 409, 443, 640, 658, 670, 713
XmaI CCCGGG 1 cut(s) 983
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 3 cut(s) 1103, 1149, 1278
ZraI GACGTC 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.