Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002359

Physical Location & Seq

Genomic Coordinates Forward (+)

13365334 .. 13369580

Gene Structure 4247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG087400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCTTCGTGTTTTAGCGGTGGCGGAAGAACCTATGCATTTGAGCTTGACATAGTCAAATCCCCTTCCACTTCAACCCGGACTTCACAAACATCCTCACCTTCTTCCACTCTCTCGGAATCAAGCAATTCGGCACTCGCAATCTCCACCCGAAAACCCCGCACCCCTCGAAAACGTCCCAACCAGACTTACAATGAAGCCGCTGCATTACTCTCCACTGCTTACCCCAACGTCTTCTCCACCAAAATCCTCACAAATCCTCGCAAATCCACCAAACCCCACGACTCCTTCCTCGACCCATCTTCCGAACTGCTCCTCCCTTTCAGACTCATCGACAATTCCGCCACTTTCCTCCTCCACAACCCCATCCGAGAAAAACCCAATTCTCGATTCGAGCCCAAAGCCATCAATTCATTTGAAAAGTCTTGTAATTCGCCTGGGGAGTTCAATTCCCCGGTGAATTTCGACTCCAATTATCCCAACTCCTCCTCCATGGAGCTGTGCGATGACTTCGACGCGGAATCTATGCTGGACGAGGAAATTGAGGAGGGTATTGATAGTATCATGGGGAGTAGTACCAGCATGAACATCGATTCCGTCGATGAGTCCACTAGTAGTGACCCAATGATGACGGACTCCTGCTATGGCTACCCAATGGGGTTGGGATTTGGCGGGAATTTCGAACTCGGGTTCGGATTCAGAAGAGGAGGAGTGAGGCCGTTGAGGCAAGTCGACGATGGAGTGAATTGGTGGAGTTTCCCGACCGTCGATGTTGTTGAAATCTCGCCCAGATTCAACAAATCTCGTCCGTCCGTTCCGGCTCCGTCGGCCCCACCTTCTGCTTGGAAGAAGAAGAAGAAGAAGATGGAGAAGCTAGCGGTGGTGGAGTCCAAGCTGGCTGAGTTGCCTCTAAAGGAGAAGAGTCGGAATCCGAAGGAGGAGTCGGAGCCTGGCGGGCTGATGCTGAAGCTGGACTACGACGACGTTTTGAGTGCTTGGTCCGACAAAGCGTCGCCGTTTCCGGAGGAGTTGCAGGGCGGCGCTGATGGAAACGACGTCTCTGTATGTTTCTCATCTCTCGCCAGGAAATCAAATTCCAGCAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

369

Amino Acids

40.43

Weight (kDa)

5.31

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25990 AT4G25990 AT4G25990 AT5G57180 AT5G57180 AT5G57180 AT5G57180
fragaria_vesca	FvH4_2g01490 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780
malus_domestica	MD13G1239300.v1.1 MD16G1248400.v1.1
prunus_persica	Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1
pyrus_communis	pycom13g21340 pycom16g20820
rosa_chinensis	RchiOBHm_Chr4g0399481
rosa_laevigata	RLG00000009263
rosa_multiflora	Rmu_sc0002285.1_g000032 Rmu_sc0004311.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344410
rosa_rugosa	Rorug04G0017200 Rorug04G0017300 Rorug04G0017300
rosa_samantha	Rh4AG095100 Rh4BG092500 Rh4CG103600 Rh4DG087400
rosa_wichuraiana	Rw4G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1059
AccI	GTMKAC	1 cut(s)	732
AccII	CGCG	1 cut(s)	518
AccIII	TCCGGA	1 cut(s)	1021
AcsI	RAATTY	3 cut(s)	460, 676, 1093
AcuI	CTGAAG	1 cut(s)	986
AcyI	GRCGYC	1 cut(s)	1056
AfaI	GTAC	1 cut(s)	577
AgsI	TTSAA	5 cut(s)	75, 419, 448, 779, 796
AhdI	GACNNNNNGTC	1 cut(s)	1009
AhlI	ACTAGT	1 cut(s)	611
AjnI	CCWGG	3 cut(s)	436, 949, 1082
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AloI	GAACNNNNNNTCC	4 cut(s)	300, 332, 578, 610
AluBI	AGCT	5 cut(s)	46, 499, 874, 895, 970
AluI	AGCT	5 cut(s)	46, 499, 874, 895, 970
Alw26I	GTCTC	1 cut(s)	1063
Ama87I	CYCGRG	1 cut(s)	686
Aor13HI	TCCGGA	1 cut(s)	1021
AoxI	GGCC	2 cut(s)	716, 828
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	3 cut(s)	460, 676, 1093
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AspLEI	GCGC	1 cut(s)	1043
AspS9I	GGNCC	2 cut(s)	829, 999
AsuC2I	CCSGG	2 cut(s)	79, 455
AsuHPI	GGTGA	2 cut(s)	90, 469
AsuII	TTCGAA	1 cut(s)	681
AsuNHI	GCTAGC	1 cut(s)	874
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	999
BanII	GRGCYC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	959, 991
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	6 cut(s)	307, 374, 413, 731, 859, 1040
BceAI	ACGGC	2 cut(s)	703, 1000
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	3 cut(s)	438, 951, 1084
BcnI	CCSGG	2 cut(s)	79, 455
BcoDI	GTCTC	1 cut(s)	1063
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	2 cut(s)	612, 875
BfoI	RGCGCY	1 cut(s)	1044
BglI	GCCNNNNNGGC	2 cut(s)	724, 955
BisI	GCNGC	3 cut(s)	201, 204, 1039
BlsI	GCNGC	3 cut(s)	202, 205, 1040
Bme1390I	CCNGG	5 cut(s)	79, 438, 455, 951, 1084
Bme18I	GGWCC	1 cut(s)	999
BmeRI	GACNNNNNGTC	1 cut(s)	1009
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	829, 999
BmiI	GGNNCC	3 cut(s)	822, 831, 948
BmrFI	CCNGG	5 cut(s)	79, 438, 455, 951, 1084
BmsI	GCATC	1 cut(s)	951
BmtI	GCTAGC	1 cut(s)	878
BpiI	GAAGAC	1 cut(s)	226
Bpu14I	TTCGAA	1 cut(s)	681
BpuMI	CCSGG	2 cut(s)	79, 455
Bsa29I	ATCGAT	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	1056
BsaJI	CCNNGG	3 cut(s)	437, 453, 492
BsaWI	WCCGGW	1 cut(s)	1021
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 300, 330, 473, 503
BseAI	TCCGGA	1 cut(s)	1021
BseBI	CCWGG	3 cut(s)	438, 951, 1084
BseCI	ATCGAT	1 cut(s)	591
BseDI	CCNNGG	3 cut(s)	437, 453, 492
BseGI	GGATG	2 cut(s)	92, 366
BseMII	CTCAG	1 cut(s)	891
BseRI	GAGGAG	9 cut(s)	305, 344, 475, 478, 560, 720, 723, 953, 1040
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	518
Bsh1285I	CGRYCG	1 cut(s)	765
BshFI	GGCC	2 cut(s)	718, 830
BshVI	ATCGAT	1 cut(s)	591
BsiEI	CGRYCG	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	4 cut(s)	79, 455, 818, 1022
BslFI	GGGAC	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	1063
BsmBI	CGTCTC	1 cut(s)	1063
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	718, 830
BsoBI	CYCGRG	1 cut(s)	686
Bsp119I	TTCGAA	1 cut(s)	681
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp13I	TCCGGA	1 cut(s)	1021
Bsp19I	CCATGG	1 cut(s)	492
BspANI	GGCC	2 cut(s)	718, 830
BspCNI	CTCAG	1 cut(s)	892
BspDI	ATCGAT	1 cut(s)	591
BspEI	TCCGGA	1 cut(s)	1021
BspFNI	CGCG	1 cut(s)	518
BspLI	GGNNCC	3 cut(s)	822, 831, 948
BspOI	GCTAGC	1 cut(s)	878
BspT104I	TTCGAA	1 cut(s)	681
BssECI	CCNNGG	3 cut(s)	437, 453, 492
BssNI	GRCGYC	1 cut(s)	1056
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	3 cut(s)	438, 951, 1084
Bst4CI	ACNGT	1 cut(s)	766
Bst6I	CTCTTC	2 cut(s)	697, 914
BstACI	GRCGYC	1 cut(s)	1056
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	3 cut(s)	876, 897, 956
BstDEI	CTNAG	1 cut(s)	900
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	92, 366
BstFNI	CGCG	1 cut(s)	518
BstH2I	RGCGCY	1 cut(s)	1044
BstHHI	GCGC	1 cut(s)	1043
BstMAI	GTCTC	1 cut(s)	1063
BstMCI	CGRYCG	1 cut(s)	765
BstMWI	GCNNNNNNNGC	3 cut(s)	724, 827, 955
BstNI	CCWGG	3 cut(s)	438, 951, 1084
BstSCI	CCNGG	5 cut(s)	77, 436, 453, 949, 1082
BstUI	CGCG	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	718, 830
BsuTUI	ATCGAT	1 cut(s)	591
BtgI	CCRYGG	1 cut(s)	492
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	92, 366
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	876, 897, 956
CfoI	GCGC	1 cut(s)	1043
Cfr13I	GGNCC	2 cut(s)	829, 999
ClaI	ATCGAT	1 cut(s)	591
CseI	GACGC	2 cut(s)	524, 999
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	3 cut(s)	493, 565, 583
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	1 cut(s)	900
DriI	GACNNNNNGTC	1 cut(s)	1009
Eam1104I	CTCTTC	2 cut(s)	697, 914
Eam1105I	GACNNNNNGTC	1 cut(s)	1009
EarI	CTCTTC	2 cut(s)	697, 914
EciI	GGCGGA	2 cut(s)	39, 331
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	999
Eco57I	CTGAAG	1 cut(s)	986
Eco88I	CYCGRG	1 cut(s)	686
EcoRII	CCWGG	3 cut(s)	436, 949, 1082
EcoT14I	CCWWGG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	1063
FaeI	CATG	3 cut(s)	496, 568, 586
FaiI	YATR	8 cut(s)	36, 53, 494, 527, 566, 584, 645, 1066
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	492, 564, 582
FauI	CCCGC	3 cut(s)	167, 665, 947
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	3 cut(s)	201, 204, 1039
FokI	GGATG	2 cut(s)	79, 353
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	201, 204, 1039
FspBI	CTAG	2 cut(s)	612, 875
GlaI	GCGC	1 cut(s)	1042
GluI	GCNGC	3 cut(s)	201, 204, 1039
HaeII	RGCGCY	1 cut(s)	1044
HaeIII	GGCC	2 cut(s)	718, 830
HapII	CCGG	4 cut(s)	79, 455, 818, 1022
HgaI	GACGC	2 cut(s)	524, 999
HhaI	GCGC	1 cut(s)	1043
Hin1I	GRCGYC	1 cut(s)	1056
Hin1II	CATG	3 cut(s)	496, 568, 586
Hin6I	GCGC	1 cut(s)	1041
HinP1I	GCGC	1 cut(s)	1041
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HpaII	CCGG	4 cut(s)	79, 455, 818, 1022
HphI	GGTGA	2 cut(s)	90, 469
Hpy166II	GTNNAC	2 cut(s)	609, 733
Hpy188III	TCNNGA	3 cut(s)	387, 760, 1022
Hpy8I	GTNNAC	2 cut(s)	609, 733
Hpy99I	CGWCG	9 cut(s)	518, 602, 737, 770, 829, 983, 986, 1015, 1058
HpyAV	CCTTC	5 cut(s)	75, 111, 298, 846, 928
HpyCH4III	ACNGT	1 cut(s)	766
HpyCH4IV	ACGT	4 cut(s)	175, 231, 984, 1056
HpyCH4V	TGCA	3 cut(s)	38, 206, 1033
HpyF10VI	GCNNNNNNNGC	3 cut(s)	724, 827, 955
HpyF3I	CTNAG	1 cut(s)	900
HpySE526I	ACGT	4 cut(s)	175, 231, 984, 1056
Hsp92I	GRCGYC	1 cut(s)	1056
Hsp92II	CATG	3 cut(s)	496, 568, 586
HspAI	GCGC	1 cut(s)	1041
Kpn2I	TCCGGA	1 cut(s)	1021
LmnI	GCTCC	4 cut(s)	318, 496, 826, 946
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	951
MaeI	CTAG	2 cut(s)	612, 875
MaeII	ACGT	4 cut(s)	175, 231, 984, 1056
MaeIII	GTNAC	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	399
MlyI	GAGTC	8 cut(s)	278, 321, 461, 614, 629, 896, 931, 950
MmeI	TCCRAC	3 cut(s)	905, 924, 1026
Mph1103I	ATGCAT	1 cut(s)	40
MroI	TCCGGA	1 cut(s)	1021
MseI	TTAA	1 cut(s)	1108
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	4 cut(s)	79, 455, 818, 1022
MspR9I	CCNGG	5 cut(s)	79, 438, 455, 951, 1084
MvaI	CCWGG	3 cut(s)	438, 951, 1084
MvnI	CGCG	1 cut(s)	518
MwoI	GCNNNNNNNGC	3 cut(s)	724, 827, 955
NciI	CCSGG	2 cut(s)	79, 455
NcoI	CCATGG	1 cut(s)	492
NheI	GCTAGC	1 cut(s)	874
NlaIII	CATG	3 cut(s)	496, 568, 586
NlaIV	GGNNCC	3 cut(s)	822, 831, 948
NmuCI	GTSAC	1 cut(s)	617
NsiI	ATGCAT	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PfeI	GAWTC	7 cut(s)	119, 390, 521, 593, 696, 792, 928
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	202, 205, 1040
PleI	GAGTC	8 cut(s)	278, 321, 461, 613, 629, 895, 930, 949
PpsI	GAGTC	8 cut(s)	278, 321, 461, 613, 629, 895, 930, 949
Psp6I	CCWGG	3 cut(s)	436, 949, 1082
PspGI	CCWGG	3 cut(s)	436, 949, 1082
PspN4I	GGNNCC	3 cut(s)	822, 831, 948
PspPI	GGNCC	2 cut(s)	829, 999
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SalI	GTCGAC	1 cut(s)	731
SaqAI	TTAA	1 cut(s)	1108
SatI	GCNGC	3 cut(s)	201, 204, 1039
Sau96I	GGNCC	2 cut(s)	829, 999
SchI	GAGTC	8 cut(s)	278, 321, 461, 614, 629, 896, 931, 950
ScrFI	CCNGG	5 cut(s)	79, 438, 455, 951, 1084
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	951
SfuI	TTCGAA	1 cut(s)	681
SinI	GGWCC	1 cut(s)	999
SpeI	ACTAGT	1 cut(s)	611
SspMI	CTAG	2 cut(s)	612, 875
StyD4I	CCNGG	5 cut(s)	77, 436, 453, 949, 1082
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	766
TaiI	ACGT	4 cut(s)	178, 234, 987, 1059
TauI	GCSGC	2 cut(s)	203, 1041
TfiI	GAWTC	7 cut(s)	119, 390, 521, 593, 696, 792, 928
Tru1I	TTAA	1 cut(s)	1108
Tru9I	TTAA	1 cut(s)	1108
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	3 cut(s)	210, 402, 599
TspGWI	ACGGA	5 cut(s)	586, 647, 798, 802, 813
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	999
XapI	RAATTY	3 cut(s)	460, 676, 1093
XcmI	CCANNNNNNNNNTGG	1 cut(s)	840
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	2 cut(s)	612, 875
ZraI	GACGTC	1 cut(s)	1057
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.