pycom13g21340

Protein CHLOROPLAST IMPORT APPARATUS 2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
17900511 .. 17904751
4241 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21340.4

Sequence Viewer

Length: 1677 bp
ATGAAAGAGGCATTGTCTCTTCCCCTGTCTCATCTCCATCACTCATACATAGGCACTTCCCAGTCTCCCAGTGCCCCTCTGCCTCTGGTCTGTAGAGAGAGAGAGAGAGACAGAGAATCAGTGTCTCTTCATATGCCTGTGGTATATTTACAGGCTTCCCAACGGTTCTTTACACCCTTTTATTTGTTCGGTTCGCCCCGTGACCTACTCTGCAAAAAATCCACCTCCTCTGTCTCTCCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCTTTTGGTGGTTTAGGCTGAAGAATCTGAATTTTTGGTTTCTAAATTCTCTGTCTTTGCCTGTTGTTCCTCAGAATCATCAAAAGATGTCTTCGTGTATAAGCGGCGGCGGAAGAACCTATGCGTTCGAGCTTGAAATAATTAAATCGCCGTCCACATCAACCTTCACCTCCACCTCTTCTCCCTCCTCAACTCTCTCGGAATCCTGCAACTCCGGCCTCGCAATCTCGACACGAAAACCTCGTACCCCCAGAAAACGGCCCAACCAAACATACAATGAAGCCGCCGCATTGCTCTCCACAGCGTACCCCAACATCTTCTCCTCCAAAAGTTTCACAAATCCCAGAAAATTCACCAAACCTCACGACTCCTTCTTCGACCAATCCGCGGAGTTGCTCCTGCCGTTCAGAGTCATCGAGGCCGAAAACTCCGGGTTCTTGCTCCACCACCAACTCCGGGAAAACCCCAGTTCCCGATTAGAGCCCAAGTCCCTGAACTCGTTCGAGAAGCCGTGCCGGAGTCCGGGGGAATTCGAGTCCCAACCGAATTGCAATTCCGATTCCATGGAGTTGAGTGACGGGTATAATTTCCAAGAGGAAGATTTCGATGCGGAGTCGATTCTCGACGAGGAAATTGAAGAGGGGATTGATAGCATCATGGGAAGTATGAGTGTGAACATGGACTTGGACGAGGAGTCTAACAATGGCGGAGGTGGGCAAATGAAGAATTCGAATCCAAACCCGAATTCGACTTGGAATTCCTGTTATGGGTACCCAATGGGGCTCGGATTTGGCGGGAAATTCGAGTTCGGGTCGAGAAGAGGAGTGAGGCCGTTGAGGCACGTCGACGAGGGGAACTGGTGGAGTTTTCCCACCGTAGATGTTCTTGAAATCTCGCCCAGATTCAACAAATCTCTATCATCTTCCGCCCCGGCTCCGGCAGCGGCCACAGCCAAGAAGAAGAAGAAGAAGAAGGTGGAGAAACTGTCGGTCTTGGAATCGAGAATCACCGCGGAATCGCCTAATGAGGCGAGTCCGATTCCCAAGCCCCCGGCGGAGGAAGAGCCCGGGCTGATGCTGAAGTTGGACTACGACGACGTTTTGAATGCCTGGTCGGACAAAGCGTCGCCGTTTTCGGAGGAAATTCCGGGATCTGATGCGGCGGGGAATGATGTCGCTGCCAGGTTGGCGCAGATTGATTTATTCTCGGACGTCGGAGGACTGAGGGAAGCTAGTGTGTTGCGCTACAAGGAGAAACGCCGTACTCGCCTCTTCTCTAAGAAGATCAGATACCAAGTTAGAAAAGTCAACGCCGATCAACGACCCAGGATGAAGGGTCGATTTGTTAGAAGGCCACATTCTAGCACAAATGCTCAAAGACAAAAGGAAATATGA

Protein Analysis

559

Amino Acids

62.46

Weight (kDa)

8.86

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1497
Acc65I GGTACC 1 cut(s) 1053
AccB1I GGYRCC 1 cut(s) 1053
AccI GTMKAC 1 cut(s) 1128
AccII CGCG 2 cut(s) 671, 1295
AclWI GGATC 1 cut(s) 1441
AcoI YGGCCR 1 cut(s) 1227
AcsI RAATTY 9 cut(s) 313, 328, 632, 812, 1009, 1027, 1039, 1082, 1425
AcuI CTGAAG 2 cut(s) 323, 1382
AcyI GRCGYC 1 cut(s) 1494
AfaI GTAC 4 cut(s) 529, 590, 1055, 1546
AfiI CCNNNNNNNGG 8 cut(s) 288, 540, 670, 739, 805, 1050, 1219, 1339
AgsI TTSAA 5 cut(s) 419, 920, 1172, 1189, 1387
AhdI GACNNNNNGTC 2 cut(s) 976, 1405
AjiI CACGTC 1 cut(s) 1126
AjnI CCWGG 3 cut(s) 1391, 1463, 1607
AjuI GAANNNNNNNTTGG 4 cut(s) 950, 982, 1012, 1044
AluBI AGCT 2 cut(s) 415, 1514
AluI AGCT 2 cut(s) 415, 1514
Alw26I GTCTC 6 cut(s) 21, 33, 69, 102, 129, 238
AlwI GGATC 1 cut(s) 1441
Ama87I CYCGRG 1 cut(s) 1349
AoxI GGCC 6 cut(s) 499, 542, 702, 1112, 1227, 1634
ApeKI GCWGC 2 cut(s) 1223, 1460
ApoI RAATTY 9 cut(s) 313, 328, 632, 812, 1009, 1027, 1039, 1082, 1425
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp700I GAANNNNTTC 1 cut(s) 782
Asp718I GGTACC 1 cut(s) 1053
AspLEI GCGC 2 cut(s) 1474, 1527
AspS9I GGNCC 1 cut(s) 543
AsuC2I CCSGG 8 cut(s) 715, 740, 807, 1214, 1334, 1350, 1351, 1431
AsuHPI GGTGA 3 cut(s) 442, 628, 1282
AsuII TTCGAA 1 cut(s) 1013
AvaI CYCGRG 1 cut(s) 1349
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 1053
BanII GRGCYC 3 cut(s) 768, 1068, 1350
BarI GAAGNNNNNNTAC 4 cut(s) 1355, 1387, 1556, 1588
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 1235, 1447
BccI CCATC 2 cut(s) 45, 249
BceAI ACGGC 7 cut(s) 418, 557, 670, 778, 1099, 1396, 1527
BciT130I CCWGG 3 cut(s) 1393, 1465, 1609
BcnI CCSGG 8 cut(s) 715, 740, 807, 1214, 1334, 1350, 1351, 1431
BcoDI GTCTC 6 cut(s) 21, 33, 69, 102, 129, 238
BfaI CTAG 2 cut(s) 1515, 1644
BfmI CTRYAG 1 cut(s) 91
BglI GCCNNNNNGGC 2 cut(s) 1120, 1469
BisI GCNGC 8 cut(s) 388, 391, 567, 570, 1224, 1227, 1443, 1461
BlsI GCNGC 8 cut(s) 389, 392, 568, 571, 1225, 1228, 1444, 1462
BmeRI GACNNNNNGTC 2 cut(s) 976, 1405
BmeT110I CYCGRG 1 cut(s) 1349
BmgBI CACGTC 1 cut(s) 1126
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 2 cut(s) 1055, 1218
BmrI ACTGGG 3 cut(s) 55, 63, 744
BmsI GCATC 4 cut(s) 880, 945, 1347, 1429
BmuI ACTGGG 3 cut(s) 55, 63, 744
BpiI GAAGAC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 1013
BpuMI CCSGG 8 cut(s) 715, 740, 807, 1214, 1334, 1350, 1351, 1431
BsaHI GRCGYC 1 cut(s) 1494
BsaJI CCNNGG 8 cut(s) 669, 806, 846, 1212, 1293, 1332, 1349, 1607
BsaXI ACNNNNNCTCC 6 cut(s) 448, 478, 587, 617, 1253, 1283
Bsc4I CCNNNNNNNGG 8 cut(s) 288, 540, 670, 739, 805, 1050, 1219, 1339
Bse1I ACTGG 4 cut(s) 61, 69, 750, 1145
Bse3DI GCAATG 1 cut(s) 572
BseBI CCWGG 3 cut(s) 1393, 1465, 1609
BseDI CCNNGG 8 cut(s) 669, 806, 846, 1212, 1293, 1332, 1349, 1607
BseGI GGATG 1 cut(s) 1617
BseLI CCNNNNNNNGG 8 cut(s) 288, 540, 670, 739, 805, 1050, 1219, 1339
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 368, 1496
BseNI ACTGG 4 cut(s) 61, 69, 750, 1145
BseRI GAGGAG 5 cut(s) 217, 460, 595, 989, 1119
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 2 cut(s) 1235, 1447
Bsh1236I CGCG 2 cut(s) 671, 1295
BshFI GGCC 6 cut(s) 501, 544, 704, 1114, 1229, 1636
BshNI GGYRCC 1 cut(s) 1053
BsiHKCI CYCGRG 1 cut(s) 1349
BslFI GGGAC 2 cut(s) 757, 805
BslI CCNNNNNNNGG 8 cut(s) 288, 540, 670, 739, 805, 1050, 1219, 1339
BsmAI GTCTC 6 cut(s) 21, 33, 69, 102, 129, 238
BsmFI GGGAC 2 cut(s) 757, 805
BsmI GAATGC 1 cut(s) 1393
BsnI GGCC 6 cut(s) 501, 544, 704, 1114, 1229, 1636
BsoBI CYCGRG 1 cut(s) 1349
Bsp119I TTCGAA 1 cut(s) 1013
Bsp1286I GDGCHC 4 cut(s) 76, 768, 1068, 1350
Bsp143I GATC 3 cut(s) 1433, 1566, 1597
Bsp19I CCATGG 1 cut(s) 846
BspANI GGCC 6 cut(s) 501, 544, 704, 1114, 1229, 1636
BspCNI CTCAG 2 cut(s) 367, 1497
BspFNI CGCG 2 cut(s) 671, 1295
BspLI GGNNCC 2 cut(s) 1055, 1218
BspPI GGATC 1 cut(s) 1441
BspQI GCTCTTC 1 cut(s) 1338
BspT104I TTCGAA 1 cut(s) 1013
BspT107I GGYRCC 1 cut(s) 1053
BsrDI GCAATG 1 cut(s) 572
BsrI ACTGG 4 cut(s) 61, 69, 750, 1145
BssECI CCNNGG 8 cut(s) 669, 806, 846, 1212, 1293, 1332, 1349, 1607
BssMI GATC 3 cut(s) 1433, 1566, 1597
BssNI GRCGYC 1 cut(s) 1494
BssT1I CCWWGG 1 cut(s) 846
Bst2UI CCWGG 3 cut(s) 1393, 1465, 1609
Bst4CI ACNGT 3 cut(s) 165, 1159, 1269
Bst6I CTCTTC 7 cut(s) 24, 132, 466, 915, 1096, 1338, 1559
BstACI GRCGYC 1 cut(s) 1494
BstBI TTCGAA 1 cut(s) 1013
BstDEI CTNAG 3 cut(s) 354, 1505, 1560
BstDSI CCRYGG 3 cut(s) 669, 846, 1293
BstF5I GGATG 1 cut(s) 1617
BstFNI CGCG 2 cut(s) 671, 1295
BstHHI GCGC 2 cut(s) 1474, 1527
BstKTI GATC 3 cut(s) 1436, 1569, 1600
BstMAI GTCTC 6 cut(s) 21, 33, 69, 102, 129, 238
BstMBI GATC 3 cut(s) 1433, 1566, 1597
BstMWI GCNNNNNNNGC 6 cut(s) 498, 1120, 1223, 1232, 1469, 1548
BstNI CCWGG 3 cut(s) 1393, 1465, 1609
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 671, 1295
BstV1I GCAGC 2 cut(s) 1235, 1447
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 1433
BstYI RGATCY 1 cut(s) 1433
BsuRI GGCC 6 cut(s) 501, 544, 704, 1114, 1229, 1636
BtgI CCRYGG 3 cut(s) 669, 846, 1293
BtrI CACGTC 1 cut(s) 1126
BtsCI GGATG 1 cut(s) 1617
BtsIMutI CAGTG 2 cut(s) 76, 126
CfoI GCGC 2 cut(s) 1474, 1527
Cfr13I GGNCC 1 cut(s) 543
Cfr42I CCGCGG 2 cut(s) 672, 1296
Cfr9I CCCGGG 1 cut(s) 1349
CseI GACGC 1 cut(s) 1395
Csp6I GTAC 4 cut(s) 528, 589, 1054, 1545
CviAII CATG 3 cut(s) 847, 940, 961
CviQI GTAC 4 cut(s) 528, 589, 1054, 1545
DdeI CTNAG 3 cut(s) 354, 1505, 1560
DpnI GATC 3 cut(s) 1435, 1568, 1599
DpnII GATC 3 cut(s) 1433, 1566, 1597
DriI GACNNNNNGTC 2 cut(s) 976, 1405
EaeI YGGCCR 1 cut(s) 1227
Eam1104I CTCTTC 7 cut(s) 24, 132, 466, 915, 1096, 1338, 1559
Eam1105I GACNNNNNGTC 2 cut(s) 976, 1405
EarI CTCTTC 7 cut(s) 24, 132, 466, 915, 1096, 1338, 1559
EciI GGCGGA 4 cut(s) 408, 1005, 1198, 1352
Eco130I CCWWGG 1 cut(s) 846
Eco24I GRGCYC 3 cut(s) 768, 1068, 1350
Eco57I CTGAAG 2 cut(s) 323, 1382
Eco88I CYCGRG 1 cut(s) 1349
EcoRI GAATTC 4 cut(s) 812, 1009, 1027, 1039
EcoRII CCWGG 3 cut(s) 1391, 1463, 1607
EcoT14I CCWWGG 1 cut(s) 846
EcoT38I GRGCYC 3 cut(s) 768, 1068, 1350
ErhI CCWWGG 1 cut(s) 846
FaeI CATG 3 cut(s) 850, 943, 964
FaqI GGGAC 2 cut(s) 757, 805
FatI CATG 3 cut(s) 846, 939, 960
FauI CCCGC 2 cut(s) 1070, 1438
FauNDI CATATG 1 cut(s) 132
FblI GTMKAC 1 cut(s) 1128
Fnu4HI GCNGC 8 cut(s) 388, 391, 567, 570, 1224, 1227, 1443, 1461
FokI GGATG 1 cut(s) 1624
FriOI GRGCYC 3 cut(s) 768, 1068, 1350
Fsp4HI GCNGC 8 cut(s) 388, 391, 567, 570, 1224, 1227, 1443, 1461
FspBI CTAG 2 cut(s) 1515, 1644
GlaI GCGC 2 cut(s) 1473, 1526
GluI GCNGC 8 cut(s) 388, 391, 567, 570, 1224, 1227, 1443, 1461
HaeIII GGCC 6 cut(s) 501, 544, 704, 1114, 1229, 1636
HgaI GACGC 1 cut(s) 1395
HhaI GCGC 2 cut(s) 1474, 1527
Hin1I GRCGYC 1 cut(s) 1494
Hin1II CATG 3 cut(s) 850, 943, 964
Hin6I GCGC 2 cut(s) 1472, 1525
HinP1I GCGC 2 cut(s) 1472, 1525
HincII GTYRAC 2 cut(s) 1129, 1591
HindII GTYRAC 2 cut(s) 1129, 1591
HphI GGTGA 3 cut(s) 442, 628, 1282
Hpy166II GTNNAC 4 cut(s) 438, 958, 1129, 1591
Hpy188III TCNNGA 8 cut(s) 511, 647, 756, 787, 905, 1098, 1169, 1284
Hpy8I GTNNAC 4 cut(s) 438, 958, 1129, 1591
Hpy99I CGWCG 7 cut(s) 911, 1130, 1133, 1379, 1382, 1411, 1499
HpyAV CCTTC 5 cut(s) 457, 664, 1249, 1609, 1626
HpyCH4III ACNGT 3 cut(s) 165, 1159, 1269
HpyCH4IV ACGT 3 cut(s) 1125, 1380, 1494
HpyCH4V TGCA 3 cut(s) 213, 492, 834
HpyF10VI GCNNNNNNNGC 6 cut(s) 498, 1120, 1223, 1232, 1469, 1548
HpyF3I CTNAG 3 cut(s) 354, 1505, 1560
HpySE526I ACGT 3 cut(s) 1125, 1380, 1494
Hsp92I GRCGYC 1 cut(s) 1494
Hsp92II CATG 3 cut(s) 850, 943, 964
HspAI GCGC 2 cut(s) 1472, 1525
KpnI GGTACC 1 cut(s) 1057
KspI CCGCGG 2 cut(s) 672, 1296
Kzo9I GATC 3 cut(s) 1433, 1566, 1597
LguI GCTCTTC 1 cut(s) 1338
LmnI GCTCC 3 cut(s) 684, 729, 1222
Lsp1109I GCAGC 2 cut(s) 1235, 1447
LweI GCATC 4 cut(s) 880, 945, 1347, 1429
MaeI CTAG 2 cut(s) 1515, 1644
MaeII ACGT 3 cut(s) 1125, 1380, 1494
MaeIII GTNAC 2 cut(s) 200, 857
MalI GATC 3 cut(s) 1435, 1568, 1599
MboI GATC 3 cut(s) 1433, 1566, 1597
MflI RGATCY 1 cut(s) 1433
MhlI GDGCHC 4 cut(s) 76, 768, 1068, 1350
MlyI GAGTC 7 cut(s) 644, 702, 811, 827, 905, 986, 1324
MmeI TCCRAC 3 cut(s) 1347, 1377, 1477
MroXI GAANNNNTTC 1 cut(s) 782
MseI TTAA 1 cut(s) 426
MspA1I CMGCKG 3 cut(s) 671, 1226, 1295
Mva1269I GAATGC 1 cut(s) 1393
MvaI CCWGG 3 cut(s) 1393, 1465, 1609
MvnI CGCG 2 cut(s) 671, 1295
MwoI GCNNNNNNNGC 6 cut(s) 498, 1120, 1223, 1232, 1469, 1548
NciI CCSGG 8 cut(s) 715, 740, 807, 1214, 1334, 1350, 1351, 1431
NcoI CCATGG 1 cut(s) 846
NdeI CATATG 1 cut(s) 132
NdeII GATC 3 cut(s) 1433, 1566, 1597
NlaIII CATG 3 cut(s) 850, 943, 964
NlaIV GGNNCC 2 cut(s) 1055, 1218
NmuCI GTSAC 2 cut(s) 200, 857
NspV TTCGAA 1 cut(s) 1013
PciSI GCTCTTC 1 cut(s) 1338
PcsI WCGNNNNNNNCGW 2 cut(s) 523, 1403
PctI GAATGC 1 cut(s) 1393
PdmI GAANNNNTTC 1 cut(s) 782
PfoI TCCNGGA 2 cut(s) 738, 1429
PkrI GCNGC 8 cut(s) 389, 392, 568, 571, 1225, 1228, 1444, 1462
PleI GAGTC 7 cut(s) 644, 701, 810, 826, 904, 985, 1323
PpsI GAGTC 7 cut(s) 644, 701, 810, 826, 904, 985, 1323
Psp6I CCWGG 3 cut(s) 1391, 1463, 1607
PspGI CCWGG 3 cut(s) 1391, 1463, 1607
PspN4I GGNNCC 2 cut(s) 1055, 1218
PspPI GGNCC 1 cut(s) 543
PsuI RGATCY 1 cut(s) 1433
RsaI GTAC 4 cut(s) 529, 590, 1055, 1546
RsaNI GTAC 4 cut(s) 528, 589, 1054, 1545
SacII CCGCGG 2 cut(s) 672, 1296
SalI GTCGAC 1 cut(s) 1127
SapI GCTCTTC 1 cut(s) 1338
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 8 cut(s) 388, 391, 567, 570, 1224, 1227, 1443, 1461
Sau3AI GATC 3 cut(s) 1433, 1566, 1597
Sau96I GGNCC 1 cut(s) 543
SchI GAGTC 7 cut(s) 644, 702, 811, 827, 905, 986, 1324
SduI GDGCHC 4 cut(s) 76, 768, 1068, 1350
SfaNI GCATC 4 cut(s) 880, 945, 1347, 1429
SfcI CTRYAG 1 cut(s) 91
Sfr303I CCGCGG 2 cut(s) 672, 1296
SfuI TTCGAA 1 cut(s) 1013
SgrBI CCGCGG 2 cut(s) 672, 1296
SgrDI CGTCGACG 1 cut(s) 1127
SmaI CCCGGG 1 cut(s) 1351
SrfI GCCCGGGC 1 cut(s) 1351
SspMI CTAG 2 cut(s) 1515, 1644
StyI CCWWGG 1 cut(s) 846
TaaI ACNGT 3 cut(s) 165, 1159, 1269
TaiI ACGT 3 cut(s) 1128, 1383, 1497
TaqII GACCGA 1 cut(s) 1261
TauI GCSGC 6 cut(s) 390, 393, 569, 572, 1229, 1445
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 76, 126
TseFI GTSAC 2 cut(s) 200, 857
TseI GCWGC 2 cut(s) 1223, 1460
Tsp45I GTSAC 2 cut(s) 200, 857
TspDTI ATGAA 5 cut(s) 17, 119, 576, 1019, 1628
TspMI CCCGGG 1 cut(s) 1349
TspRI CASTG 2 cut(s) 76, 126
XapI RAATTY 9 cut(s) 313, 328, 632, 812, 1009, 1027, 1039, 1082, 1425
XmaI CCCGGG 1 cut(s) 1349
XmiI GTMKAC 1 cut(s) 1128
XmnI GAANNNNTTC 1 cut(s) 782
XspI CTAG 2 cut(s) 1515, 1644
ZraI GACGTC 1 cut(s) 1495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.