Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Reverse (-)

13484839 .. 13486858

Gene Structure 2020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTTGGTTTTGAGAATTTTGTCGCGAGTAACCCGCAACGCGGGCATACGCTCATCTCTATCCGCCGTCACTCTTCCGGCGAGGAATCAGACTCCTGTTTTCTCGAGCCGGTTTCACTCCCTAGCTCACGATTTCTCGCATAAGCTTGTTCCAGCTCAGATGTCTATGATGGATTCGTTTGCACTGCAAAGGTTCAATTTTTCTTCCTCTACCTCGCCTGAATCAGATGAGAAGAAGACCCACACTGAGGCCTCAAAGACAAGTGAAGAGAAACCTACAGCTGAGGCAAACCAACCAGGTCTTGACTCTGAATCTAAAGATTCTGTGACAGATTCTGCAAAAAGAAAGCGGAAAGGTGCTAAAGGAGCTGCATCTTCATCTTCTGAATCAGATTCTGAGAGTGATGATGATGAATTGTCAGCCGATGATTTGGTGAAGCTCGTAGCTGAGAAGGAAGAGCTACTGTCTGAGAAGGAAGAAGAGATTAAGCAGTTGAAAGACAAAGTTCTTCGCACTTATGCTGAGATGGAGAATGTCATGGACAGAACAAGACGTGATGCTGAAAACACCAAAAAGTATGCCGTACAGAATTTTGCAAAGAGCCTATTGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTGTCAAAGAAAGCTTCTCAAAGCTTGACACCTCAGAAGATTCTGCTGGAGCAGCTCCACTATTAAAGACCCTTTTAGAAGGAGTGGAGATGACTGAGAAACAGCTTGCTGAGGTATTTAAGAAATTTGGTATGGAGAAGTATGATCCTATAAACGAGCCATTTGATCCAAACAGACATAACGCAGTGTTCCAAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGTCTGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTACCCAGGGAGGAGAGAACCAAGAAGAAAAGAAAGAGTCTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

327

Amino Acids

36.12

Weight (kDa)

5.26

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	148 - 313	4.7e-50	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	914
AccII	CGCG	2 cut(s)	25, 41
AciI	CCGC	5 cut(s)	34, 41, 63, 349, 617
AclWI	GGATC	2 cut(s)	782, 803
AcsI	RAATTY	3 cut(s)	15, 589, 767
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	40, 247
AgsI	TTSAA	3 cut(s)	196, 496, 883
AjiI	CACGTC	1 cut(s)	554
AjnI	CCWGG	2 cut(s)	295, 939
AlwI	GGATC	2 cut(s)	782, 803
AlwNI	CAGNNNCTG	2 cut(s)	335, 395
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	368, 695
ApoI	RAATTY	3 cut(s)	15, 589, 767
Asp700I	GAANNNNTTC	1 cut(s)	634
AsuHPI	GGTGA	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	875, 907
BbsI	GAAGAC	1 cut(s)	242
BbvCI	CCTCAGC	3 cut(s)	282, 753, 924
BbvI	GCAGC	2 cut(s)	355, 707
BccI	CCATC	2 cut(s)	163, 520
BceAI	ACGGC	2 cut(s)	50, 566
BciT130I	CCWGG	2 cut(s)	297, 941
BciVI	GTATCC	1 cut(s)	884
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	884
BisI	GCNGC	2 cut(s)	369, 696
BlsI	GCNGC	2 cut(s)	370, 697
Bme1390I	CCNGG	2 cut(s)	297, 941
BmeT110I	CYCGRG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	554
BmrFI	CCNGG	2 cut(s)	297, 941
BmsI	GCATC	4 cut(s)	380, 547, 835, 967
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	3 cut(s)	282, 753, 924
BsaJI	CCNNGG	2 cut(s)	939, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 247
Bse118I	RCCGGY	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	297, 941
BseDI	CCNNGG	2 cut(s)	939, 940
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	40, 247
BseRI	GAGGAG	1 cut(s)	960
BseXI	GCAGC	2 cut(s)	355, 707
Bsh1236I	CGCG	2 cut(s)	25, 41
BshFI	GGCC	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	77, 109
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	2 cut(s)	40, 247
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	787, 808
Bsp68I	TCGCGA	1 cut(s)	25
BspACI	CCGC	5 cut(s)	34, 41, 63, 349, 617
BspANI	GGCC	1 cut(s)	251
BspFNI	CGCG	2 cut(s)	25, 41
BspPI	GGATC	2 cut(s)	782, 803
BspQI	GCTCTTC	2 cut(s)	450, 625
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	939, 940
BssMI	GATC	2 cut(s)	787, 808
Bst2UI	CCWGG	2 cut(s)	297, 941
Bst4CI	ACNGT	2 cut(s)	465, 868
Bst6I	CTCTTC	5 cut(s)	78, 261, 450, 474, 625
BstC8I	GCNNGC	2 cut(s)	43, 750
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	2 cut(s)	25, 41
BstKTI	GATC	2 cut(s)	790, 811
BstMBI	GATC	2 cut(s)	787, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 365, 695
BstNI	CCWGG	2 cut(s)	297, 941
BstSCI	CCNGG	2 cut(s)	295, 939
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	2 cut(s)	25, 41
BstV1I	GCAGC	2 cut(s)	355, 707
BstV2I	GAAGAC	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	884
BsuRI	GGCC	1 cut(s)	251
BtrI	CACGTC	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	2 cut(s)	182, 834
BtsIMutI	CAGTG	3 cut(s)	182, 243, 834
BtuMI	TCGCGA	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	43, 750
CaiI	CAGNNNCTG	2 cut(s)	335, 395
Cfr10I	RCCGGY	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	584
CviAII	CATG	2 cut(s)	538, 875
CviQI	GTAC	1 cut(s)	584
DpnI	GATC	2 cut(s)	789, 810
DpnII	GATC	2 cut(s)	787, 808
Eam1104I	CTCTTC	5 cut(s)	78, 261, 450, 474, 625
EarI	CTCTTC	5 cut(s)	78, 261, 450, 474, 625
EciI	GGCGGA	2 cut(s)	52, 632
Eco147I	AGGCCT	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	295, 939
FaeI	CATG	2 cut(s)	541, 878
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	2 cut(s)	537, 874
FauI	CCCGC	2 cut(s)	34, 41
Fnu4HI	GCNGC	2 cut(s)	369, 696
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	2 cut(s)	369, 696
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	2 cut(s)	369, 696
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	77, 109
Hin1II	CATG	2 cut(s)	541, 878
HindIII	AAGCTT	3 cut(s)	143, 655, 665
HpaII	CCGG	2 cut(s)	77, 109
HphI	GGTGA	1 cut(s)	445
Hpy188III	TCNNGA	6 cut(s)	24, 103, 128, 302, 880, 888
HpyAV	CCTTC	4 cut(s)	445, 466, 716, 854
HpyCH4III	ACNGT	2 cut(s)	465, 868
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	5 cut(s)	182, 187, 338, 371, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 365, 695
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	541, 878
Kzo9I	GATC	2 cut(s)	787, 808
LguI	GCTCTTC	2 cut(s)	450, 625
LmnI	GCTCC	3 cut(s)	365, 692, 703
Lsp1109I	GCAGC	2 cut(s)	355, 707
LweI	GCATC	4 cut(s)	380, 547, 835, 967
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	4 cut(s)	28, 67, 325, 934
MalI	GATC	2 cut(s)	789, 810
MboI	GATC	2 cut(s)	787, 808
MluCI	AATT	5 cut(s)	15, 196, 413, 589, 767
MlyI	GAGTC	3 cut(s)	85, 299, 980
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	4 cut(s)	486, 707, 762, 982
MspA1I	CMGCKG	2 cut(s)	281, 923
MspI	CCGG	2 cut(s)	77, 109
MspR9I	CCNGG	2 cut(s)	297, 941
MvaI	CCWGG	2 cut(s)	297, 941
MvnI	CGCG	2 cut(s)	25, 41
MwoI	GCNNNNNNNGC	3 cut(s)	42, 365, 695
NdeII	GATC	2 cut(s)	787, 808
NlaIII	CATG	2 cut(s)	541, 878
NmuCI	GTSAC	2 cut(s)	67, 325
NruI	TCGCGA	1 cut(s)	25
PaeR7I	CTCGAG	1 cut(s)	103
PasI	CCCWGGG	1 cut(s)	940
PceI	AGGCCT	1 cut(s)	251
PciSI	GCTCTTC	2 cut(s)	450, 625
PdmI	GAANNNNTTC	1 cut(s)	634
PfeI	GAWTC	9 cut(s)	85, 173, 221, 311, 320, 332, 386, 392, 683
PkrI	GCNGC	2 cut(s)	370, 697
PleI	GAGTC	3 cut(s)	85, 299, 979
PpsI	GAGTC	3 cut(s)	85, 299, 979
PsiI	TTATAA	1 cut(s)	914
Psp6I	CCWGG	2 cut(s)	295, 939
PspGI	CCWGG	2 cut(s)	295, 939
PstNI	CAGNNNCTG	2 cut(s)	335, 395
PvuII	CAGCTG	2 cut(s)	281, 923
RruI	TCGCGA	1 cut(s)	25
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
SapI	GCTCTTC	2 cut(s)	450, 625
SaqAI	TTAA	4 cut(s)	486, 707, 762, 982
SatI	GCNGC	2 cut(s)	369, 696
Sau3AI	GATC	2 cut(s)	787, 808
SchI	GAGTC	3 cut(s)	85, 299, 980
ScrFI	CCNGG	2 cut(s)	297, 941
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	4 cut(s)	380, 547, 835, 967
SfcI	CTRYAG	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	5 cut(s)	15, 196, 413, 589, 767
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	5 cut(s)	34, 41, 63, 349, 617
SspMI	CTAG	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	295, 939
TaaI	ACNGT	2 cut(s)	465, 868
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	1 cut(s)	104
TaqII	GACCGA	1 cut(s)	921
TasI	AATT	5 cut(s)	15, 196, 413, 589, 767
TfiI	GAWTC	9 cut(s)	85, 173, 221, 311, 320, 332, 386, 392, 683
Tru1I	TTAA	4 cut(s)	486, 707, 762, 982
Tru9I	TTAA	4 cut(s)	486, 707, 762, 982
TscAI	CASTG	3 cut(s)	189, 250, 834
TseFI	GTSAC	2 cut(s)	67, 325
TseI	GCWGC	2 cut(s)	368, 695
Tsp45I	GTSAC	2 cut(s)	67, 325
TspDTI	ATGAA	2 cut(s)	366, 426
TspRI	CASTG	3 cut(s)	189, 250, 834
XapI	RAATTY	3 cut(s)	15, 589, 767
XhoI	CTCGAG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	634
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.