Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

36402924 .. 36405787

Gene Structure 2864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTCGTGTCTAGGGTTTTAGCTCGCGTTTCGAGGGCCATCCCCAGGAGCACGGTGTCCTTCGCCGCTCAGCCGAATCACCGATTCCCAATCATTACCAATCAGCCGCAACCTCTGATTCAGGACTTGCCCAATAAGTTGATTCAGAGTCAGGTGTCGCTGTTGCATCATTCAACCTCCAGTTGTTCTATATCTCAACTATTTGGATTCTCTTCATCTGCATCTCCGGAGCCTTCTGAAAGGGTTGGAAATGGAGGTGCCGAGAAGAGTGATGCTAAAGTTTCTGATAGTGGGGATACAAAAGTGGCTGATCAAACCAAAGAATCAGATTCAGATTCAGATGGTGACTTGTCTACCGAGGATCTGGTGAAACTTCTCACAGAGAAGGAAGAACTTCTGAAACAAAAGCATAAAGAGATTGAGAAGATGCAAGATAAATTCCTCCGCACTTATGCAGAAATGGAAAATGTCATGGATAGAACAAGGCGTGAAGCAGAGAATACGAAAAAGTTCTCCATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCAGACAATTTGGGTAGAGCTGCTTCAGTTACCAAAACCGGTTTCGCAAAAATTGATCAGTCTAAGGATTCGGCTGGAACTCTGCCACTTCTGAAAACTCTTCTTGAAGGAGTTGAAATGACTGAGAAACAACTTTCGGAGGTGTTCAAAAAGTACGGTGTTGAAAAATATGATCCTACAAATGAACCATTTGACCCACATAGGCATAATGCAATGTTCCAATTATCAGATCCTTCCAAGCCTCCTGGCACTGTTGCTCAAGTTCTCAAGCCTGGATACATGCTGCACGATCGAGTTATTAGGCCGGCTGAAGTTGGTGTAACTCAAGAAGCAGAGAACAATGCAACTGAGGAAGATGCTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

306

Amino Acids

33.73

Weight (kDa)

5.62

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	126 - 291	8.1e-51	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	353
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	3 cut(s)	66, 107, 445
AclWI	GGATC	3 cut(s)	369, 716, 773
AcsI	RAATTY	2 cut(s)	437, 523
AcuI	CTGAAG	2 cut(s)	558, 879
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgeI	ACCGGT	1 cut(s)	587
AgsI	TTSAA	5 cut(s)	174, 656, 665, 697, 713
AjnI	CCWGG	3 cut(s)	44, 793, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	2 cut(s)	23, 569
AluI	AGCT	2 cut(s)	23, 569
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	3 cut(s)	369, 716, 773
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	2 cut(s)	36, 851
ApeKI	GCWGC	2 cut(s)	569, 832
ApoI	RAATTY	2 cut(s)	437, 523
AsiGI	ACCGGT	1 cut(s)	587
Asp700I	GAANNNNTTC	2 cut(s)	393, 509
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	71, 356, 379
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanI	GGYRCC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	556, 588
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	556, 819
BccI	CCATC	2 cut(s)	47, 335
BciT130I	CCWGG	3 cut(s)	46, 795, 822
BciVI	GTATCC	2 cut(s)	289, 818
BclI	TGATCA	2 cut(s)	310, 604
BfaI	CTAG	2 cut(s)	12, 542
BfuI	GTATCC	2 cut(s)	289, 818
BisI	GCNGC	4 cut(s)	66, 107, 570, 833
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	4 cut(s)	67, 108, 571, 834
Bme1390I	CCNGG	3 cut(s)	46, 795, 822
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	231, 259
BmrFI	CCNGG	3 cut(s)	46, 795, 822
BmsI	GCATC	5 cut(s)	175, 230, 262, 417, 895
BpmI	CTGGAG	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	3 cut(s)	792, 800, 858
BsaJI	CCNNGG	2 cut(s)	44, 357
BsaWI	WCCGGW	2 cut(s)	226, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	2 cut(s)	587, 853
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	768
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	3 cut(s)	46, 795, 822
BseDI	CCNNGG	2 cut(s)	44, 357
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	3 cut(s)	83, 663, 888
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	556, 819
BsgI	GTGCAG	1 cut(s)	818
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	841
BshFI	GGCC	2 cut(s)	38, 853
BshNI	GGYRCC	1 cut(s)	257
BshTI	ACCGGT	1 cut(s)	587
BsiEI	CGRYCG	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	227, 588, 854
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	2 cut(s)	38, 853
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	6 cut(s)	310, 361, 604, 721, 778, 838
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	3 cut(s)	66, 107, 445
BspANI	GGCC	2 cut(s)	38, 853
BspCNI	CTCAG	3 cut(s)	82, 664, 889
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	231, 259
BspPI	GGATC	3 cut(s)	369, 716, 773
BspT107I	GGYRCC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	768
BsrFI	RCCGGY	2 cut(s)	587, 853
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	2 cut(s)	587, 853
BssECI	CCNNGG	2 cut(s)	44, 357
BssMI	GATC	6 cut(s)	310, 361, 604, 721, 778, 838
Bst2UI	CCWGG	3 cut(s)	46, 795, 822
Bst4CI	ACNGT	3 cut(s)	55, 707, 802
Bst6I	CTCTTC	3 cut(s)	217, 260, 654
BstC8I	GCNNGC	3 cut(s)	25, 855, 910
BstDEI	CTNAG	4 cut(s)	69, 612, 672, 897
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	6 cut(s)	313, 364, 607, 724, 781, 841
BstMBI	GATC	6 cut(s)	310, 361, 604, 721, 778, 838
BstMCI	CGRYCG	1 cut(s)	841
BstNI	CCWGG	3 cut(s)	46, 795, 822
BstNSI	RCATGY	1 cut(s)	832
BstSCI	CCNGG	3 cut(s)	44, 793, 820
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	556, 819
BstX2I	RGATCY	2 cut(s)	361, 778
BstYI	RGATCY	2 cut(s)	361, 778
BsuI	GTATCC	2 cut(s)	289, 818
BsuRI	GGCC	2 cut(s)	38, 853
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	3 cut(s)	25, 855, 910
Cfr10I	RCCGGY	2 cut(s)	587, 853
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	703
CspAI	ACCGGT	1 cut(s)	587
CviAII	CATG	2 cut(s)	472, 829
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	4 cut(s)	69, 612, 672, 897
DpnI	GATC	6 cut(s)	312, 363, 606, 723, 780, 840
DpnII	GATC	6 cut(s)	310, 361, 604, 721, 778, 838
Eam1104I	CTCTTC	3 cut(s)	217, 260, 654
EarI	CTCTTC	3 cut(s)	217, 260, 654
Eco57I	CTGAAG	2 cut(s)	558, 879
EcoRII	CCWGG	3 cut(s)	44, 793, 820
FaeI	CATG	2 cut(s)	475, 832
FaiI	YATR	9 cut(s)	191, 411, 453, 473, 518, 720, 750, 756, 830
FatI	CATG	2 cut(s)	471, 828
FbaI	TGATCA	2 cut(s)	310, 604
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	4 cut(s)	66, 107, 570, 833
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	66, 107, 570, 833
FspBI	CTAG	2 cut(s)	12, 542
GluI	GCNGC	4 cut(s)	66, 107, 570, 833
GsuI	CTGGAG	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	38, 853
HapII	CCGG	3 cut(s)	227, 588, 854
Hin1II	CATG	2 cut(s)	475, 832
HpaII	CCGG	3 cut(s)	227, 588, 854
HphI	GGTGA	3 cut(s)	71, 356, 379
Hpy166II	GTNNAC	2 cut(s)	354, 539
Hpy188III	TCNNGA	4 cut(s)	122, 227, 653, 875
Hpy8I	GTNNAC	2 cut(s)	354, 539
HpyAV	CCTTC	5 cut(s)	70, 243, 379, 650, 792
HpyCH4III	ACNGT	3 cut(s)	55, 707, 802
HpyCH4V	TGCA	9 cut(s)	166, 221, 430, 455, 530, 551, 761, 835, 893
HpyF3I	CTNAG	4 cut(s)	69, 612, 672, 897
Hsp92II	CATG	2 cut(s)	475, 832
Kpn2I	TCCGGA	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	853
KroNI	GCCGGC	1 cut(s)	855
Ksp22I	TGATCA	2 cut(s)	310, 604
Kzo9I	GATC	6 cut(s)	310, 361, 604, 721, 778, 838
LmnI	GCTCC	2 cut(s)	48, 229
Lsp1109I	GCAGC	2 cut(s)	556, 819
LweI	GCATC	5 cut(s)	175, 230, 262, 417, 895
MaeI	CTAG	2 cut(s)	12, 542
MaeIII	GTNAC	3 cut(s)	344, 577, 868
MalI	GATC	6 cut(s)	312, 363, 606, 723, 780, 840
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	6 cut(s)	310, 361, 604, 721, 778, 838
MboII	GAAGA	6 cut(s)	204, 277, 401, 436, 641, 914
MfeI	CAATTG	1 cut(s)	913
MflI	RGATCY	2 cut(s)	361, 778
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	6 cut(s)	437, 523, 556, 600, 770, 913
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	9 cut(s)	27, 123, 187, 248, 352, 452, 682, 801, 892
MroI	TCCGGA	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	853
MroXI	GAANNNNTTC	2 cut(s)	393, 509
MspI	CCGG	3 cut(s)	227, 588, 854
MspR9I	CCNGG	3 cut(s)	46, 795, 822
MunI	CAATTG	1 cut(s)	913
MvaI	CCWGG	3 cut(s)	46, 795, 822
MvnI	CGCG	1 cut(s)	27
NaeI	GCCGGC	1 cut(s)	855
NdeII	GATC	6 cut(s)	310, 361, 604, 721, 778, 838
NgoMIV	GCCGGC	1 cut(s)	853
NlaIII	CATG	2 cut(s)	475, 832
NlaIV	GGNNCC	2 cut(s)	231, 259
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	832
PdiI	GCCGGC	1 cut(s)	855
PdmI	GAANNNNTTC	2 cut(s)	393, 509
PfeI	GAWTC	9 cut(s)	76, 84, 118, 142, 207, 323, 329, 335, 617
PinAI	ACCGGT	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	67, 108, 571, 834
Ple19I	CGATCG	1 cut(s)	841
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	44, 793, 820
PspGI	CCWGG	3 cut(s)	44, 793, 820
PspN4I	GGNNCC	2 cut(s)	231, 259
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	361, 778
PvuI	CGATCG	1 cut(s)	841
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
SatI	GCNGC	4 cut(s)	66, 107, 570, 833
Sau3AI	GATC	6 cut(s)	310, 361, 604, 721, 778, 838
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	3 cut(s)	46, 795, 822
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	7 cut(s)	25, 115, 156, 179, 259, 571, 693
SfaNI	GCATC	5 cut(s)	175, 230, 262, 417, 895
SmlI	CTYRAG	3 cut(s)	807, 815, 873
SmoI	CTYRAG	3 cut(s)	807, 815, 873
Sse9I	AATT	6 cut(s)	437, 523, 556, 600, 770, 913
SsiI	CCGC	3 cut(s)	66, 107, 445
SspMI	CTAG	2 cut(s)	12, 542
StyD4I	CCNGG	3 cut(s)	44, 793, 820
TaaI	ACNGT	3 cut(s)	55, 707, 802
TaqI	TCGA	2 cut(s)	32, 841
TasI	AATT	6 cut(s)	437, 523, 556, 600, 770, 913
TauI	GCSGC	2 cut(s)	68, 109
TfiI	GAWTC	9 cut(s)	76, 84, 118, 142, 207, 323, 329, 335, 617
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	2 cut(s)	569, 832
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	204, 747
TspRI	CASTG	1 cut(s)	805
XapI	RAATTY	2 cut(s)	437, 523
XceI	RCATGY	1 cut(s)	832
XmiI	GTMKAC	1 cut(s)	353
XmnI	GAANNNNTTC	2 cut(s)	393, 509
XspI	CTAG	2 cut(s)	12, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.