Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

36358404 .. 36362123

Gene Structure 3720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTTCGTGTCTAGGGTTTTAGCTCGCGCTTCGAGGGCCATCCCCAGGAGCACGGTGTCCTTCGCCGCTCTACCCAATCACCGATTCCCAATCATTTCCAATCAGCCGCAGCCTCTGATTCAGGACTTGCCCAATAAGGTGTCACTGTTGCATCATTCAGCCTCCAGTTCTTCTATATCTATATCTCAACTATTCGGATTCTCTTCATCTGCATCTCCGGAGCCTTCTGAAAGGGTTGGAAATGGAGGTGCTGAGAAGAGTGATGCTAAAGTTTCTGATAGTGGGGATACAAAAGTGGCTGATCAAACCAAAGAATCAGATTCAGATTCAGATTCAGATGGTGACTTGTCTACTGAGGATCTGGTGAAACTTCTCACAGAGAAGGAAGAACTTCTGAAACAAAAGCATAAAGAGATTGAGAAGATGCAAGAGAAAGTCCTCCGCAGTTATGCAGAAATGGAAAATGTCATGGATAGAACAAGGCGCGAAGCAGAGAATACGAAAAAGTTTTCCATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCAGACAATTTGGGTAGAGCTGCTTCAGTTACCAAAACCGGTTTCGCAAAAATTGATCAGTCTAAGGATTCGACTGGAACACTGCCACTTCTGAAAACTCTTCTTGAGGGAGTTGAAATGACTGAGAAACAACTTTCAGAGGTGTTCAAAAAGTACGGTGTTGAAAAATATGATCCTACAAATGAACCATTTGACCCACATAGGCATAATGCAATGTTCCAAATATCAGATCCTTCCAAGCCTCCTGGCACTGTTGCTCAAGTTCTCAAGCCTGGATACATGCTACATGATCGAGTTATTAGGCCGGCTGACGTTGGTGTAACTCAAGAAGCGGAAAACAATGCAACTGAGGAAGATGCTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

304

Amino Acids

33.43

Weight (kDa)

5.5

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	125 - 290	1e-50	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	350
AccII	CGCG	2 cut(s)	27, 486
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	4 cut(s)	66, 107, 442, 878
AclWI	GGATC	3 cut(s)	366, 713, 770
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	662, 694, 710
AjnI	CCWGG	3 cut(s)	44, 790, 817
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 572, 604
AluBI	AGCT	2 cut(s)	23, 566
AluI	AGCT	2 cut(s)	23, 566
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	3 cut(s)	366, 713, 770
AlwNI	CAGNNNCTG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	2 cut(s)	36, 848
ApeKI	GCWGC	2 cut(s)	109, 566
ApoI	RAATTY	1 cut(s)	520
AsiGI	ACCGGT	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	2 cut(s)	29, 486
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	71, 353, 376
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BarI	GAAGNNNNNNTAC	2 cut(s)	553, 585
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	121, 553
BccI	CCATC	2 cut(s)	47, 332
BciT130I	CCWGG	3 cut(s)	46, 792, 819
BciVI	GTATCC	2 cut(s)	280, 815
BclI	TGATCA	2 cut(s)	301, 601
BfaI	CTAG	2 cut(s)	12, 539
BfuI	GTATCC	2 cut(s)	280, 815
BisI	GCNGC	4 cut(s)	66, 107, 110, 567
BlsI	GCNGC	4 cut(s)	67, 108, 111, 568
Bme1390I	CCNGG	3 cut(s)	46, 792, 819
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	3 cut(s)	46, 792, 819
BmsI	GCATC	5 cut(s)	160, 221, 253, 414, 892
BpmI	CTGGAG	1 cut(s)	148
BpuEI	CTTGAG	4 cut(s)	671, 789, 797, 855
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	217, 584
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	2 cut(s)	584, 850
Bse1I	ACTGG	2 cut(s)	165, 625
Bse3DI	GCAATG	1 cut(s)	765
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	3 cut(s)	46, 792, 819
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	4 cut(s)	243, 345, 660, 885
BseNI	ACTGG	2 cut(s)	165, 625
BseXI	GCAGC	2 cut(s)	121, 553
Bsh1236I	CGCG	2 cut(s)	27, 486
BshFI	GGCC	2 cut(s)	38, 850
BshTI	ACCGGT	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	218, 585, 851
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	2 cut(s)	38, 850
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	6 cut(s)	301, 358, 601, 718, 775, 835
BspACI	CCGC	4 cut(s)	66, 107, 442, 878
BspANI	GGCC	2 cut(s)	38, 850
BspCNI	CTCAG	4 cut(s)	244, 346, 661, 886
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	27, 486
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	3 cut(s)	366, 713, 770
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	765
BsrFI	RCCGGY	2 cut(s)	584, 850
BsrI	ACTGG	2 cut(s)	165, 625
BssAI	RCCGGY	2 cut(s)	584, 850
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	6 cut(s)	301, 358, 601, 718, 775, 835
Bst2UI	CCWGG	3 cut(s)	46, 792, 819
Bst4CI	ACNGT	4 cut(s)	55, 147, 704, 799
Bst6I	CTCTTC	3 cut(s)	208, 251, 651
BstC8I	GCNNGC	3 cut(s)	25, 852, 907
BstDEI	CTNAG	5 cut(s)	252, 354, 609, 669, 894
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	27, 486
BstHHI	GCGC	2 cut(s)	29, 486
BstKTI	GATC	6 cut(s)	304, 361, 604, 721, 778, 838
BstMBI	GATC	6 cut(s)	301, 358, 601, 718, 775, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	3 cut(s)	46, 792, 819
BstNSI	RCATGY	1 cut(s)	829
BstSCI	CCNGG	3 cut(s)	44, 790, 817
BstUI	CGCG	2 cut(s)	27, 486
BstV1I	GCAGC	2 cut(s)	121, 553
BstX2I	RGATCY	2 cut(s)	358, 775
BstYI	RGATCY	2 cut(s)	358, 775
BsuI	GTATCC	2 cut(s)	280, 815
BsuRI	GGCC	2 cut(s)	38, 850
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	626
BtsIMutI	CAGTG	3 cut(s)	143, 626, 795
Cac8I	GCNNGC	3 cut(s)	25, 852, 907
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	29, 486
Cfr10I	RCCGGY	2 cut(s)	584, 850
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	700
CspAI	ACCGGT	1 cut(s)	584
CviAII	CATG	3 cut(s)	469, 826, 833
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	5 cut(s)	252, 354, 609, 669, 894
DpnI	GATC	6 cut(s)	303, 360, 603, 720, 777, 837
DpnII	GATC	6 cut(s)	301, 358, 601, 718, 775, 835
Eam1104I	CTCTTC	3 cut(s)	208, 251, 651
EarI	CTCTTC	3 cut(s)	208, 251, 651
Eco57I	CTGAAG	1 cut(s)	555
EcoRII	CCWGG	3 cut(s)	44, 790, 817
FaeI	CATG	3 cut(s)	472, 829, 836
FatI	CATG	3 cut(s)	468, 825, 832
FbaI	TGATCA	2 cut(s)	301, 601
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	4 cut(s)	66, 107, 110, 567
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	66, 107, 110, 567
FspBI	CTAG	2 cut(s)	12, 539
GlaI	GCGC	2 cut(s)	28, 485
GluI	GCNGC	4 cut(s)	66, 107, 110, 567
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	2 cut(s)	38, 850
HapII	CCGG	3 cut(s)	218, 585, 851
HhaI	GCGC	2 cut(s)	29, 486
Hin1II	CATG	3 cut(s)	472, 829, 836
Hin6I	GCGC	2 cut(s)	27, 484
HinP1I	GCGC	2 cut(s)	27, 484
HinfI	GANTC	8 cut(s)	84, 118, 198, 314, 320, 326, 332, 614
HpaII	CCGG	3 cut(s)	218, 585, 851
HphI	GGTGA	3 cut(s)	71, 353, 376
Hpy166II	GTNNAC	2 cut(s)	351, 536
Hpy188III	TCNNGA	4 cut(s)	122, 218, 650, 872
Hpy8I	GTNNAC	2 cut(s)	351, 536
HpyAV	CCTTC	4 cut(s)	70, 234, 376, 789
HpyCH4III	ACNGT	4 cut(s)	55, 147, 704, 799
HpyCH4IV	ACGT	1 cut(s)	858
HpyCH4V	TGCA	8 cut(s)	151, 212, 427, 452, 527, 548, 758, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	5 cut(s)	252, 354, 609, 669, 894
HpySE526I	ACGT	1 cut(s)	858
Hsp92II	CATG	3 cut(s)	472, 829, 836
HspAI	GCGC	2 cut(s)	27, 484
Kpn2I	TCCGGA	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	850
KroNI	GCCGGC	1 cut(s)	852
Ksp22I	TGATCA	2 cut(s)	301, 601
Kzo9I	GATC	6 cut(s)	301, 358, 601, 718, 775, 835
LmnI	GCTCC	2 cut(s)	48, 220
Lsp1109I	GCAGC	2 cut(s)	121, 553
LweI	GCATC	5 cut(s)	160, 221, 253, 414, 892
MaeI	CTAG	2 cut(s)	12, 539
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	4 cut(s)	141, 341, 574, 865
MalI	GATC	6 cut(s)	303, 360, 603, 720, 777, 837
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	6 cut(s)	301, 358, 601, 718, 775, 835
MboII	GAAGA	7 cut(s)	162, 195, 268, 398, 433, 638, 911
MfeI	CAATTG	1 cut(s)	910
MflI	RGATCY	2 cut(s)	358, 775
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	4 cut(s)	520, 553, 597, 910
MmeI	TCCRAC	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	850
MroXI	GAANNNNTTC	1 cut(s)	390
MspI	CCGG	3 cut(s)	218, 585, 851
MspR9I	CCNGG	3 cut(s)	46, 792, 819
MunI	CAATTG	1 cut(s)	910
MvaI	CCWGG	3 cut(s)	46, 792, 819
MvnI	CGCG	2 cut(s)	27, 486
MwoI	GCNNNNNNNGC	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	852
NdeII	GATC	6 cut(s)	301, 358, 601, 718, 775, 835
NgoMIV	GCCGGC	1 cut(s)	850
NlaIII	CATG	3 cut(s)	472, 829, 836
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	141, 341
NspI	RCATGY	1 cut(s)	829
PdiI	GCCGGC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	8 cut(s)	84, 118, 198, 314, 320, 326, 332, 614
PinAI	ACCGGT	1 cut(s)	584
PkrI	GCNGC	4 cut(s)	67, 108, 111, 568
Psp6I	CCWGG	3 cut(s)	44, 790, 817
PspGI	CCWGG	3 cut(s)	44, 790, 817
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	358, 775
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SatI	GCNGC	4 cut(s)	66, 107, 110, 567
Sau3AI	GATC	6 cut(s)	301, 358, 601, 718, 775, 835
Sau96I	GGNCC	1 cut(s)	36
ScrFI	CCNGG	3 cut(s)	46, 792, 819
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	6 cut(s)	25, 141, 250, 568, 690, 861
SfaNI	GCATC	5 cut(s)	160, 221, 253, 414, 892
SmlI	CTYRAG	4 cut(s)	650, 804, 812, 870
SmoI	CTYRAG	4 cut(s)	650, 804, 812, 870
Sse9I	AATT	4 cut(s)	520, 553, 597, 910
SsiI	CCGC	4 cut(s)	66, 107, 442, 878
SspMI	CTAG	2 cut(s)	12, 539
StyD4I	CCNGG	3 cut(s)	44, 790, 817
TaaI	ACNGT	4 cut(s)	55, 147, 704, 799
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	3 cut(s)	32, 617, 838
TasI	AATT	4 cut(s)	520, 553, 597, 910
TauI	GCSGC	2 cut(s)	68, 109
TfiI	GAWTC	8 cut(s)	84, 118, 198, 314, 320, 326, 332, 614
TscAI	CASTG	3 cut(s)	150, 633, 802
TseFI	GTSAC	2 cut(s)	141, 341
TseI	GCWGC	2 cut(s)	109, 566
Tsp45I	GTSAC	2 cut(s)	141, 341
TspDTI	ATGAA	2 cut(s)	195, 744
TspRI	CASTG	3 cut(s)	150, 633, 802
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	829
XmiI	GTMKAC	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	12, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.