Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Reverse (-)

14009836 .. 14014894

Gene Structure 5059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTTCGTGTCTAGGGTTTTAAGTCGTGCCTCAAGGACCCTTCCCAGGAGCACAATGCTCATCGCCGCTCCACAAAATCATCACTTGCCAATTCTATGCAATCAGTCCCAAGCTCTGATCCACGATTTTTCCATTAAGTTTTCTCCAAGGCAAGTGTCTCTGTTGCATCATTCAACCCCTAGTTCTTCAATCTCTCAAATATTTGGATTCTCTTCGTCTGCATCGCCACAGCCTTCAGAAAGGGAACATGGAAGTGCTGCAGAGAATGGTGGTGCTTCCACAAATGGAGAGCCAGCAAAAGAAAGTGGAGATGCTAAAGTTTCTGATCAAACAAAAGAATCAGGTTACACTTCAGATTCCCAGTCTAAGAAGTCTCCTTCTGTCAAAAGAAGGAGAGGAGGTACTAAACGAACTGCATTTTCTGATTCAGATTCAGAGGGTGAGGGTGACTTAGGTTTCGATGATCTGGTAAAACTTGTGGCTGAGAAGGAAGAACTTCTGAAGCAGAAACATGAAGAAATCAAGAGAATGCAAGATAAAGTCCTCCGAAGTTATGCAGAGATGGAAAATGTCATGGACAGAACAAGGCGTGAAGCAGAGAATTCGAAGAAATTTGCCGTACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGGAGAGCTTCTTCAGTTGTCAAAGACAGTTTCTCAAAACTTGATGAGTCTAAGGAATCTGGTGGAGCTGCACCACTTCTAAAAACACTTCTAGAAGGTGTTGAAATGACTGAGAAACAACTTATAGAGGTATTTAGAAAGTATGGAGTAGAAAAGTTTGATCCTACAAATGAAGCATTTGACCCAAACAAGCATAACGCGGTATTTAATTTAGAAGATGCTTCCAAGCCTCCAGGGACCATTGCTGTAGTTCTCAAGCCCGGATACATGCTTTATGACCGAGTTGTTAGGCCAGCTGAAGTTGGTGTAACTACAGCACCAGAGAACAATGCAACTGAGGATAATGCTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

340

Amino Acids

37.12

Weight (kDa)

6.29

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	1 cut(s)	863
AciI	CCGC	3 cut(s)	66, 653, 863
AclWI	GGATC	2 cut(s)	112, 818
AcsI	RAATTY	3 cut(s)	601, 611, 625
AcuI	CTGAAG	5 cut(s)	219, 336, 521, 660, 981
AfaI	GTAC	2 cut(s)	403, 621
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	174, 189, 767
AjnI	CCWGG	2 cut(s)	44, 895
AluBI	AGCT	4 cut(s)	113, 671, 731, 959
AluI	AGCT	4 cut(s)	113, 671, 731, 959
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	162, 378
AlwI	GGATC	2 cut(s)	112, 818
AoxI	GGCC	1 cut(s)	953
ApeKI	GCWGC	2 cut(s)	257, 731
ApoI	RAATTY	3 cut(s)	601, 611, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
Asp700I	GAANNNNTTC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	36, 900
AsuC2I	CCSGG	1 cut(s)	924
AsuHPI	GGTGA	2 cut(s)	452, 458
AsuII	TTCGAA	1 cut(s)	605
AvaII	GGWCC	2 cut(s)	36, 900
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	244, 718
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	602
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BciT130I	CCWGG	2 cut(s)	46, 897
BciVI	GTATCC	1 cut(s)	920
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	924
BcoDI	GTCTC	2 cut(s)	162, 378
BfaI	CTAG	4 cut(s)	12, 180, 644, 755
BfmI	CTRYAG	3 cut(s)	258, 909, 975
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	3 cut(s)	66, 258, 732
BlsI	GCNGC	3 cut(s)	67, 259, 733
Bme1390I	CCNGG	3 cut(s)	46, 897, 924
Bme18I	GGWCC	2 cut(s)	36, 900
BmgT120I	GGNCC	2 cut(s)	36, 900
BmiI	GGNNCC	2 cut(s)	38, 901
BmrFI	CCNGG	3 cut(s)	46, 897, 924
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	4 cut(s)	175, 230, 301, 871
BmuI	ACTGGG	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	879
Bpu14I	TTCGAA	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	16, 902
BpuMI	CCSGG	1 cut(s)	924
BsaJI	CCNNGG	3 cut(s)	44, 146, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	903
BseBI	CCWGG	2 cut(s)	46, 897
BseDI	CCNNGG	3 cut(s)	44, 146, 896
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	3 cut(s)	474, 765, 990
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	244, 718
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	863
BshFI	GGCC	1 cut(s)	955
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	2 cut(s)	91, 913
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	162, 378
BsmFI	GGGAC	2 cut(s)	91, 913
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	1 cut(s)	955
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	117, 325, 463, 823
BspACI	CCGC	3 cut(s)	66, 653, 863
BspANI	GGCC	1 cut(s)	955
BspCNI	CTCAG	3 cut(s)	475, 766, 991
BspFNI	CGCG	1 cut(s)	863
BspLI	GGNNCC	2 cut(s)	38, 901
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	2 cut(s)	112, 818
BspT104I	TTCGAA	1 cut(s)	605
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	3 cut(s)	44, 146, 896
BssMI	GATC	4 cut(s)	117, 325, 463, 823
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	46, 897
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	3 cut(s)	294, 957, 1012
BstDEI	CTNAG	6 cut(s)	366, 451, 483, 714, 774, 999
BstFNI	CGCG	1 cut(s)	863
BstKTI	GATC	4 cut(s)	120, 328, 466, 826
BstMAI	GTCTC	2 cut(s)	162, 378
BstMBI	GATC	4 cut(s)	117, 325, 463, 823
BstNI	CCWGG	2 cut(s)	46, 897
BstNSI	RCATGY	1 cut(s)	934
BstSCI	CCNGG	3 cut(s)	44, 895, 922
BstSFI	CTRYAG	3 cut(s)	258, 909, 975
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	2 cut(s)	244, 718
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	1 cut(s)	955
BtgZI	GCGATG	2 cut(s)	46, 207
Cac8I	GCNNGC	3 cut(s)	294, 957, 1012
Cfr13I	GGNCC	2 cut(s)	36, 900
Csp6I	GTAC	2 cut(s)	402, 620
CviAII	CATG	4 cut(s)	248, 512, 574, 931
CviQI	GTAC	2 cut(s)	402, 620
DdeI	CTNAG	6 cut(s)	366, 451, 483, 714, 774, 999
DpnI	GATC	4 cut(s)	119, 327, 465, 825
DpnII	GATC	4 cut(s)	117, 325, 463, 823
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	36, 900
Eco57I	CTGAAG	5 cut(s)	219, 336, 521, 660, 981
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	44, 895
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	4 cut(s)	251, 515, 577, 934
FaqI	GGGAC	2 cut(s)	91, 913
FatI	CATG	4 cut(s)	247, 511, 573, 930
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	66, 258, 732
Fsp4HI	GCNGC	3 cut(s)	66, 258, 732
FspBI	CTAG	4 cut(s)	12, 180, 644, 755
GluI	GCNGC	3 cut(s)	66, 258, 732
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	1 cut(s)	955
HapII	CCGG	1 cut(s)	924
Hin1II	CATG	4 cut(s)	251, 515, 577, 934
HinfI	GANTC	7 cut(s)	207, 338, 356, 425, 431, 710, 719
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	2 cut(s)	452, 458
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	9 cut(s)	117, 238, 325, 355, 424, 430, 436, 501, 548
Hpy188III	TCNNGA	2 cut(s)	523, 755
Hpy8I	GTNNAC	1 cut(s)	641
HpyAV	CCTTC	6 cut(s)	50, 243, 384, 387, 481, 752
HpyCH4III	ACNGT	1 cut(s)	692
HpyF3I	CTNAG	6 cut(s)	366, 451, 483, 714, 774, 999
Hsp92II	CATG	4 cut(s)	251, 515, 577, 934
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	117, 325, 463, 823
LmnI	GCTCC	3 cut(s)	48, 73, 728
Lsp1109I	GCAGC	2 cut(s)	244, 718
LweI	GCATC	4 cut(s)	175, 230, 301, 871
MaeI	CTAG	4 cut(s)	12, 180, 644, 755
MaeIII	GTNAC	3 cut(s)	344, 446, 970
MalI	GATC	4 cut(s)	119, 327, 465, 825
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	4 cut(s)	117, 325, 463, 823
MboII	GAAGA	7 cut(s)	177, 204, 503, 527, 619, 666, 890
MfeI	CAATTG	1 cut(s)	1015
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	7 cut(s)	90, 601, 611, 625, 658, 871, 1015
MlyI	GAGTC	1 cut(s)	719
MnlI	CCTC	9 cut(s)	40, 389, 392, 430, 436, 554, 784, 903, 994
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	3 cut(s)	20, 135, 870
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	3 cut(s)	46, 897, 924
MunI	CAATTG	1 cut(s)	1015
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	2 cut(s)	46, 897
MvnI	CGCG	1 cut(s)	863
NciI	CCSGG	1 cut(s)	924
NdeII	GATC	4 cut(s)	117, 325, 463, 823
NlaIII	CATG	4 cut(s)	251, 515, 577, 934
NlaIV	GGNNCC	2 cut(s)	38, 901
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	934
NspV	TTCGAA	1 cut(s)	605
PctI	GAATGC	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	6 cut(s)	207, 338, 356, 425, 431, 719
PkrI	GCNGC	3 cut(s)	67, 259, 733
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	44, 895
PspGI	CCWGG	2 cut(s)	44, 895
PspN4I	GGNNCC	2 cut(s)	38, 901
PspPI	GGNCC	2 cut(s)	36, 900
PspPPI	RGGWCCY	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	959
RsaI	GTAC	2 cut(s)	403, 621
RsaNI	GTAC	2 cut(s)	402, 620
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	20, 135, 870
SatI	GCNGC	3 cut(s)	66, 258, 732
Sau3AI	GATC	4 cut(s)	117, 325, 463, 823
Sau96I	GGNCC	2 cut(s)	36, 900
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	3 cut(s)	46, 897, 924
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	115, 346, 403, 457, 673, 733, 763, 795, 961
SfaNI	GCATC	4 cut(s)	175, 230, 301, 871
SfcI	CTRYAG	3 cut(s)	258, 909, 975
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	2 cut(s)	36, 900
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	31, 917
SmoI	CTYRAG	2 cut(s)	31, 917
Sse9I	AATT	7 cut(s)	90, 601, 611, 625, 658, 871, 1015
SsiI	CCGC	3 cut(s)	66, 653, 863
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	4 cut(s)	12, 180, 644, 755
StyD4I	CCNGG	3 cut(s)	44, 895, 922
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	692
TaqI	TCGA	2 cut(s)	459, 605
TaqII	GACCGA	1 cut(s)	957
TasI	AATT	7 cut(s)	90, 601, 611, 625, 658, 871, 1015
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	6 cut(s)	207, 338, 356, 425, 431, 719
Tru1I	TTAA	3 cut(s)	20, 135, 870
Tru9I	TTAA	3 cut(s)	20, 135, 870
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	257, 731
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	528, 849
VpaK11BI	GGWCC	2 cut(s)	36, 900
XapI	RAATTY	3 cut(s)	601, 611, 625
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	1 cut(s)	934
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	4 cut(s)	12, 180, 644, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.