Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

19019948 .. 19021483

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0193100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGAGAGCTTCAAGTTTCTATGATTGTTTTAGCTCTCTAGTTTGCCTTACCTTGTGCCTTGAGCAGGTTCAGTTGTTTGCATTTGCTTCTGCTTCTATTAATTCCAATTCTGAAGCAGAGGCTCTTCTCAAATGGAGAGACAGCCTTCAAAACCAAACACAGAATAATCTCACCTCATCATGGACCTATAGTCCCAGTACTCGTAATGCCACGAACTCTTCCGGAAAACCAGAAGCAAGTGCAAGCCCTTGCCATTGGAGTGGTATTTTATGCAACAGAGCTGGAAGCGTGAGCAACATAAGCCTTTCCAATTTTGGTTTACAAGGTACGCTGCATGAATTTATGTTCCCCTCCTTCCCCAGTCTCGAATATCTGAACCTCAGCTTCAATCAACTCTTTGATGTCATCCCACCTAAGATCAGTTCCCTCACCAAACTTGTGTATCTTGATGTAACCAATAATCAGTTGTCAGGGAGAATCCCACCAGAAATCGGTCTTCTAAGAAATCTGACTTTTCTTATTCTCCGTGGTAATAATCTGTTTTATACTATTCCTAAACAGATAGGAAACCTGAAATCTCTCATGGAGCTAGAATTGAGCTATAATCAACTCAGTGGTTCAATTCCATCATCATTAGGTGATTTGCCAAACCTTACTCATCTTTATCTCCAACATAACAACCTTTCTGGCAACATCCCTCCAAATTTTGGAAACTTCAGAAAGATCACTGTGTTACACTTGTGGAGCAACAAACTCTCTGGCCCTATCCCTCCAGAAATAGGATATTTGAATTCTTTAGAAGATCTAAACTGTGACATCAATAATCTTAGTGGTTCTATCCCAACATCATTTAGTAACCTAACAAACCTTGCATGGCTCTCTCTCGGTGCAAATAATCTAGCTGGAGCTGTTCCTACAGAGATTGGGAAATTGAAATCTATGTTGAGTATAAATCTCGGCTGGAATCACCTCACTGGTTCAATTCCAACACCACTAGGTGATTTGACAAACCTTACTATTCTTTATCTCCAACATAATAACCTTTCTGGTTCCATCCCTCCGAATTTTGGAAACTTCAGAAAGCTTACTGTGTTATACTTGTGGAGAAATCAACTCTATGGTTCTATACCTCCAGAATTAGGATACCTGAAGTCTCTAGAAGATCTAAACTTGAGCAATAATCATCTCAATGGTTCGATCCCTACATCACTGGGTAACCTAACAAACCTTGAATGGCTCTATCTCGGTGGAAACAATCTATCTGGAGCTATTCCTACAGAGATTGGGAAATTGAAATCTATGTTGGGTATAGATTTTGGCATCAATCAACTGAATGGTTCAATTCCCACTTCATTCGGTGACCTGACAAACCTTACAAATCTCTACCTTCGCGATAACCAACTTTCCGGCTCCATCCCCCAAGAGATGGAGAAACTTAAGAAGCTGGTTATACTGCTTTTGGATGCTAACCAATTTTCTGGTTATTTGCCCCAATATATTGGCCAAGGTGGATGTCACGCCCCGAATTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

511

Amino Acids

56.05

Weight (kDa)

6.15

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	110 - 156	4.9e-06	Leucine rich repeat
LRR_14	PF23598	121 - 251	7.9e-13	Leucine-rich repeat region
LRR_8	PF13855	168 - 228	3.1e-10	Leucine rich repeat
LRR_4	PF12799	196 - 234	3.3e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	244 - 344	4.2e-07	Leucine-rich repeat region
LRR_14	PF23598	326 - 414	6.1e-08	Leucine-rich repeat region
LRR_4	PF12799	336 - 372	2.3e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	357 - 434	3.6e-06	Leucine-rich repeat region
LRR_8	PF13855	360 - 420	1.2e-10	Leucine rich repeat
LRR_14	PF23598	402 - 485	1.9e-06	Leucine-rich repeat region
LRR_8	PF13855	442 - 492	8.1e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccB7I	CCANNNNNTGG	2 cut(s)	707, 1426
AccII	CGCG	1 cut(s)	1392
AccIII	TCCGGA	1 cut(s)	221
AclWI	GGATC	1 cut(s)	1192
AcoI	YGGCCR	1 cut(s)	1501
AcsI	RAATTY	5 cut(s)	338, 703, 790, 1063, 1525
AcuI	CTGAAG	4 cut(s)	132, 700, 1060, 1169
AdeI	CACNNNGTG	1 cut(s)	998
AfaI	GTAC	2 cut(s)	199, 328
AfiI	CCNNNNNNNGG	8 cut(s)	64, 180, 491, 707, 779, 1067, 1139, 1426
AflII	CTTAAG	1 cut(s)	1436
AhdI	GACNNNNNGTC	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	2 cut(s)	1286, 1318
Alw26I	GTCTC	3 cut(s)	132, 368, 1158
AlwI	GGATC	1 cut(s)	1192
Aor13HI	TCCGGA	1 cut(s)	221
AoxI	GGCC	2 cut(s)	760, 1501
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	5 cut(s)	338, 703, 790, 1063, 1525
AseI	ATTAAT	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	183, 761
AsuHPI	GGTGA	6 cut(s)	163, 421, 650, 959, 1010, 1370
AvaII	GGWCC	1 cut(s)	183
BaeI	ACNNNNGTAYC	2 cut(s)	425, 458
BalI	TGGCCA	1 cut(s)	1503
BbsI	GAAGAC	1 cut(s)	488
BbvCI	CCTCAGC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	4 cut(s)	634, 1061, 1420, 1421
BciVI	GTATCC	1 cut(s)	1136
BcoDI	GTCTC	3 cut(s)	132, 368, 1158
BfaI	CTAG	5 cut(s)	38, 590, 899, 995, 1157
BfmI	CTRYAG	3 cut(s)	187, 915, 1275
BfrI	CTTAAG	1 cut(s)	1436
BfuAI	ACCTGC	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	1136
BglII	AGATCT	2 cut(s)	802, 1162
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
BmcAI	AGTACT	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	183
BmeRI	GACNNNNNGTC	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	183, 761
BmiI	GGNNCC	2 cut(s)	1051, 1411
BmrI	ACTGGG	3 cut(s)	189, 354, 1220
BmsI	GCATC	2 cut(s)	1329, 1453
BmuI	ACTGGG	3 cut(s)	189, 354, 1220
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	4 cut(s)	756, 924, 1116, 1284
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	80, 1192
BsaJI	CCNNGG	2 cut(s)	526, 1504
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	8 cut(s)	64, 180, 491, 707, 779, 1067, 1139, 1426
Bse1I	ACTGG	4 cut(s)	195, 360, 979, 1215
BseAI	TCCGGA	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	526, 1504
BseGI	GGATG	6 cut(s)	405, 693, 1053, 1413, 1468, 1517
BseLI	CCNNNNNNNGG	8 cut(s)	64, 180, 491, 707, 779, 1067, 1139, 1426
BseMII	CTCAG	2 cut(s)	394, 625
BseNI	ACTGG	4 cut(s)	195, 360, 979, 1215
BseXI	GCAGC	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	1392
BshFI	GGCC	2 cut(s)	762, 1503
BsiSI	CCGG	2 cut(s)	222, 1407
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	8 cut(s)	64, 180, 491, 707, 779, 1067, 1139, 1426
BsmAI	GTCTC	3 cut(s)	132, 368, 1158
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	762, 1503
Bsp13I	TCCGGA	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	417, 723, 802, 1162, 1197
Bsp68I	TCGCGA	1 cut(s)	1392
BspANI	GGCC	2 cut(s)	762, 1503
BspCNI	CTCAG	2 cut(s)	393, 624
BspEI	TCCGGA	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	1392
BspLI	GGNNCC	2 cut(s)	1051, 1411
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	1192
BspQI	GCTCTTC	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	1436
BsrI	ACTGG	4 cut(s)	195, 360, 979, 1215
BssECI	CCNNGG	2 cut(s)	526, 1504
BssMI	GATC	5 cut(s)	417, 723, 802, 1162, 1197
BssT1I	CCWWGG	1 cut(s)	1504
Bst4CI	ACNGT	3 cut(s)	730, 812, 1090
Bst6I	CTCTTC	2 cut(s)	129, 223
BstAFI	CTTAAG	1 cut(s)	1436
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	5 cut(s)	380, 414, 500, 611, 827
BstDSI	CCRYGG	1 cut(s)	526
BstEII	GGTNACC	2 cut(s)	1214, 1358
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	6 cut(s)	405, 693, 1053, 1413, 1468, 1517
BstFNI	CGCG	1 cut(s)	1392
BstKTI	GATC	5 cut(s)	420, 726, 805, 1165, 1200
BstMAI	GTCTC	3 cut(s)	132, 368, 1158
BstMBI	GATC	5 cut(s)	417, 723, 802, 1162, 1197
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstPI	GGTNACC	2 cut(s)	1214, 1358
BstSFI	CTRYAG	3 cut(s)	187, 915, 1275
BstUI	CGCG	1 cut(s)	1392
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	802, 1162
BstXI	CCANNNNNNTGG	3 cut(s)	260, 1478, 1499
BstYI	RGATCY	2 cut(s)	802, 1162
BsuI	GTATCC	1 cut(s)	1136
BsuRI	GGCC	2 cut(s)	762, 1503
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	6 cut(s)	405, 693, 1053, 1413, 1468, 1517
BtsIMutI	CAGTG	4 cut(s)	619, 726, 972, 1208
BtuMI	TCGCGA	1 cut(s)	1392
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	183, 761
Csp6I	GTAC	2 cut(s)	198, 327
CviAII	CATG	4 cut(s)	180, 335, 583, 873
CviQI	GTAC	2 cut(s)	198, 327
DdeI	CTNAG	5 cut(s)	380, 414, 500, 611, 827
DpnI	GATC	5 cut(s)	419, 725, 804, 1164, 1199
DpnII	GATC	5 cut(s)	417, 723, 802, 1162, 1197
DraIII	CACNNNGTG	1 cut(s)	998
DriI	GACNNNNNGTC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	1501
Eam1104I	CTCTTC	2 cut(s)	129, 223
Eam1105I	GACNNNNNGTC	1 cut(s)	189
EarI	CTCTTC	2 cut(s)	129, 223
Eco130I	CCWWGG	1 cut(s)	1504
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	4 cut(s)	132, 700, 1060, 1169
Eco91I	GGTNACC	2 cut(s)	1214, 1358
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO65I	GGTNACC	2 cut(s)	1214, 1358
EcoRI	GAATTC	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	1504
ErhI	CCWWGG	1 cut(s)	1504
FaeI	CATG	4 cut(s)	183, 338, 586, 876
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	4 cut(s)	179, 334, 582, 872
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	6 cut(s)	392, 680, 1040, 1400, 1475, 1524
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	5 cut(s)	38, 590, 899, 995, 1157
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	4 cut(s)	756, 924, 1116, 1284
HaeIII	GGCC	2 cut(s)	762, 1503
HapII	CCGG	2 cut(s)	222, 1407
Hin1II	CATG	4 cut(s)	183, 338, 586, 876
HindIII	AAGCTT	1 cut(s)	1082
HinfI	GANTC	2 cut(s)	477, 964
HpaII	CCGG	2 cut(s)	222, 1407
HphI	GGTGA	6 cut(s)	163, 421, 650, 959, 1010, 1370
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	6 cut(s)	112, 375, 510, 719, 1062, 1079
Hpy188III	TCNNGA	8 cut(s)	222, 365, 446, 773, 1133, 1157, 1263, 1391
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	3 cut(s)	155, 364, 1397
HpyCH4III	ACNGT	3 cut(s)	730, 812, 1090
HpyCH4V	TGCA	6 cut(s)	80, 242, 273, 334, 872, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	5 cut(s)	380, 414, 500, 611, 827
Hsp92II	CATG	4 cut(s)	183, 338, 586, 876
Kpn2I	TCCGGA	1 cut(s)	221
Kzo9I	GATC	5 cut(s)	417, 723, 802, 1162, 1197
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	5 cut(s)	586, 744, 905, 1265, 1415
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	2 cut(s)	1329, 1453
MaeI	CTAG	5 cut(s)	38, 590, 899, 995, 1157
MaeIII	GTNAC	7 cut(s)	451, 732, 812, 854, 1214, 1358, 1514
MalI	GATC	5 cut(s)	419, 725, 804, 1164, 1199
MboI	GATC	5 cut(s)	417, 723, 802, 1162, 1197
MboII	GAAGA	5 cut(s)	116, 210, 488, 812, 1172
MflI	RGATCY	2 cut(s)	802, 1162
MlsI	TGGCCA	1 cut(s)	1503
MluNI	TGGCCA	1 cut(s)	1503
MmeI	TCCRAC	3 cut(s)	694, 1010, 1054
Mox20I	TGGCCA	1 cut(s)	1503
MroI	TCCGGA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	1503
MseI	TTAA	2 cut(s)	99, 1437
MslI	CAYNNNNRTG	2 cut(s)	258, 1188
Msp20I	TGGCCA	1 cut(s)	1503
MspCI	CTTAAG	1 cut(s)	1436
MspI	CCGG	2 cut(s)	222, 1407
MvnI	CGCG	1 cut(s)	1392
MwoI	GCNNNNNNNGC	1 cut(s)	300
NdeII	GATC	5 cut(s)	417, 723, 802, 1162, 1197
NlaIII	CATG	4 cut(s)	183, 338, 586, 876
NlaIV	GGNNCC	2 cut(s)	1051, 1411
NmeAIII	GCCGAG	1 cut(s)	936
NmuCI	GTSAC	3 cut(s)	812, 1358, 1514
NruI	TCGCGA	1 cut(s)	1392
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	477, 964
PflMI	CCANNNNNTGG	2 cut(s)	707, 1426
PkrI	GCNGC	1 cut(s)	333
PshBI	ATTAAT	1 cut(s)	99
PspEI	GGTNACC	2 cut(s)	1214, 1358
PspN4I	GGNNCC	2 cut(s)	1051, 1411
PspPI	GGNCC	2 cut(s)	183, 761
PsuI	RGATCY	2 cut(s)	802, 1162
RruI	TCGCGA	1 cut(s)	1392
RsaI	GTAC	2 cut(s)	199, 328
RsaNI	GTAC	2 cut(s)	198, 327
RseI	CAYNNNNRTG	2 cut(s)	258, 1188
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	99, 1437
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	5 cut(s)	417, 723, 802, 1162, 1197
Sau96I	GGNCC	2 cut(s)	183, 761
ScaI	AGTACT	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	1329, 1453
SfcI	CTRYAG	3 cut(s)	187, 915, 1275
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	258, 1188
SmlI	CTYRAG	3 cut(s)	59, 1171, 1436
SmoI	CTYRAG	3 cut(s)	59, 1171, 1436
SspMI	CTAG	5 cut(s)	38, 590, 899, 995, 1157
StyI	CCWWGG	1 cut(s)	1504
TaaI	ACNGT	3 cut(s)	730, 812, 1090
TaqI	TCGA	2 cut(s)	366, 1196
TaqII	GACCGA	1 cut(s)	482
TatI	WGTACW	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	477, 964
Tru1I	TTAA	2 cut(s)	99, 1437
Tru9I	TTAA	2 cut(s)	99, 1437
TscAI	CASTG	4 cut(s)	619, 733, 979, 1215
TseFI	GTSAC	3 cut(s)	812, 1358, 1514
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	3 cut(s)	812, 1358, 1514
TspDTI	ATGAA	2 cut(s)	351, 1341
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	4 cut(s)	619, 733, 979, 1215
Van91I	CCANNNNNTGG	2 cut(s)	707, 1426
Vha464I	CTTAAG	1 cut(s)	1436
VpaK11BI	GGWCC	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	99
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	5 cut(s)	338, 703, 790, 1063, 1525
XbaI	TCTAGA	1 cut(s)	1156
XspI	CTAG	5 cut(s)	38, 590, 899, 995, 1157
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.