Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Reverse (-)

56564136 .. 56566902

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTTCGTGTCTAGGGTTTTAGCTCGGGTTTCGAAGGCCATCCCCAGGAGCACGGTGTCCTTCGCCGCTCTACCCAATCACCGATTCCCAATCATTTCCAATCAGCCGCAGCCTCTGATTCAGGACTTGCCCAATAAGTTGATTCCGAGTCAGGTGTCGCTGTTGCATCATTCAACTTCCAGTTCTTCTATATCTCAACTATTTGGATTCTCTTCATCTGCATCTCCGGAGCCTTCTGAAAGGGTTGGAAATGGAGGTGCCGAGAAGAGTGATGCTAAAGTTTCTGATAGTGGGGATACAAAAGTGGCTGATCAAACCAAAGAATCAGGTTCTATTCCAGATTCCCAGTCTACCAATGTTAGGAGACAACGTACTCTAAGAGGAGGTACTAAACGAACTGCATTTTCCGATTCAGATTCAGATTCAGATTCAGATGGTGACTTGTCTACTGAGGATCTGGTGAAACTTCTCACAGAGAAGGAAGAACTTCTGAAACAAAAGCATAAAGAGATTGAGAAGATGCAAGATAAAGTCCTCCGCAGTTATGCGGAAATGGAAAATGTCATGGATAGAACAAGGCGCGAAGCAGAGAATACGAAAAAGTTTTCCATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCAGACAATTTGGGTAGAGCTGCTTCAGTTACCAAAACTGGTTTCGCAAAAATTGATCAGTCTAAGGATTCGGCTGGAACTCTGCCACTTCTGAAAACTCTTCTTGAAGGAGTTGAAATGACTGAGAAACAACTTTCGGAGGTGTTCAAAAAGTACGGTGTTGAAAAATATGATCCTACAAATGAACCATTTGACCCACATAGGCATAATGCAATGTTCCAAATATCAGATCCTTCCAAGCCTCCTGGCACTGTTGCTCAAGTTCTCAAGCCTGGATACATGCTGCATGATCGAGTTATTAGGCCAGCTGACGTTGGTGTAACTCAAGAAGCGGAAAGCAATGCAACTGAGGAAGATGCTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

336

Amino Acids

36.89

Weight (kDa)

6.04

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	157 - 322	1.4e-50	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	2 cut(s)	350, 446
AccII	CGCG	1 cut(s)	582
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	5 cut(s)	66, 107, 538, 548, 974
AclWI	GGATC	3 cut(s)	462, 809, 866
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	3 cut(s)	373, 388, 797
AfiI	CCNNNNNNNGG	2 cut(s)	45, 360
AgsI	TTSAA	5 cut(s)	174, 749, 758, 790, 806
AjnI	CCWGG	3 cut(s)	44, 886, 913
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 668, 700
AluBI	AGCT	3 cut(s)	23, 662, 950
AluI	AGCT	3 cut(s)	23, 662, 950
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	462, 809, 866
AlwNI	CAGNNNCTG	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	24
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	2 cut(s)	36, 944
ApeKI	GCWGC	3 cut(s)	109, 662, 925
ApoI	RAATTY	1 cut(s)	616
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	582
AsuHPI	GGTGA	3 cut(s)	71, 449, 472
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanI	GGYRCC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	649, 681
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	121, 649, 912
BccI	CCATC	2 cut(s)	47, 428
BciT130I	CCWGG	3 cut(s)	46, 888, 915
BciVI	GTATCC	2 cut(s)	289, 911
BclI	TGATCA	2 cut(s)	310, 697
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	2 cut(s)	12, 635
BfuI	GTATCC	2 cut(s)	289, 911
BisI	GCNGC	5 cut(s)	66, 107, 110, 663, 926
BlsI	GCNGC	5 cut(s)	67, 108, 111, 664, 927
Bme1390I	CCNGG	3 cut(s)	46, 888, 915
BmeT110I	CYCGRG	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	231, 259
BmrFI	CCNGG	3 cut(s)	46, 888, 915
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	5 cut(s)	175, 230, 262, 510, 988
BmuI	ACTGGG	1 cut(s)	340
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	3 cut(s)	885, 893, 951
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 360
Bse1I	ACTGG	3 cut(s)	180, 346, 685
Bse3DI	GCAATG	2 cut(s)	861, 988
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	3 cut(s)	46, 888, 915
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	45, 360
BseMI	GCAATG	2 cut(s)	861, 988
BseMII	CTCAG	3 cut(s)	441, 756, 981
BseNI	ACTGG	3 cut(s)	180, 346, 685
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	121, 649, 912
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	2 cut(s)	38, 946
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	45, 360
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	38, 946
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	6 cut(s)	310, 454, 697, 814, 871, 931
BspACI	CCGC	5 cut(s)	66, 107, 538, 548, 974
BspANI	GGCC	2 cut(s)	38, 946
BspCNI	CTCAG	3 cut(s)	442, 757, 982
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	2 cut(s)	231, 259
BspPI	GGATC	3 cut(s)	462, 809, 866
BspT104I	TTCGAA	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	2 cut(s)	861, 988
BsrI	ACTGG	3 cut(s)	180, 346, 685
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	6 cut(s)	310, 454, 697, 814, 871, 931
Bst2UI	CCWGG	3 cut(s)	46, 888, 915
Bst4CI	ACNGT	3 cut(s)	55, 800, 895
Bst6I	CTCTTC	3 cut(s)	217, 260, 747
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	948, 1003
BstDEI	CTNAG	5 cut(s)	377, 450, 705, 765, 990
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	6 cut(s)	313, 457, 700, 817, 874, 934
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	6 cut(s)	310, 454, 697, 814, 871, 931
BstNI	CCWGG	3 cut(s)	46, 888, 915
BstNSI	RCATGY	1 cut(s)	925
BstSCI	CCNGG	3 cut(s)	44, 886, 913
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	3 cut(s)	121, 649, 912
BstX2I	RGATCY	2 cut(s)	454, 871
BstYI	RGATCY	2 cut(s)	454, 871
BsuI	GTATCC	2 cut(s)	289, 911
BsuRI	GGCC	2 cut(s)	38, 946
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	891
Cac8I	GCNNGC	2 cut(s)	948, 1003
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	582
Csp6I	GTAC	3 cut(s)	372, 387, 796
CviAII	CATG	3 cut(s)	565, 922, 929
CviQI	GTAC	3 cut(s)	372, 387, 796
DdeI	CTNAG	5 cut(s)	377, 450, 705, 765, 990
DpnI	GATC	6 cut(s)	312, 456, 699, 816, 873, 933
DpnII	GATC	6 cut(s)	310, 454, 697, 814, 871, 931
Eam1104I	CTCTTC	3 cut(s)	217, 260, 747
EarI	CTCTTC	3 cut(s)	217, 260, 747
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	44, 886, 913
FaeI	CATG	3 cut(s)	568, 925, 932
FatI	CATG	3 cut(s)	564, 921, 928
FbaI	TGATCA	2 cut(s)	310, 697
FblI	GTMKAC	2 cut(s)	350, 446
Fnu4HI	GCNGC	5 cut(s)	66, 107, 110, 663, 926
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	66, 107, 110, 663, 926
FspBI	CTAG	2 cut(s)	12, 635
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	5 cut(s)	66, 107, 110, 663, 926
HaeIII	GGCC	2 cut(s)	38, 946
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	3 cut(s)	568, 925, 932
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	3 cut(s)	71, 449, 472
Hpy166II	GTNNAC	3 cut(s)	351, 447, 632
Hpy188III	TCNNGA	5 cut(s)	122, 227, 338, 746, 968
Hpy8I	GTNNAC	3 cut(s)	351, 447, 632
HpyAV	CCTTC	6 cut(s)	28, 70, 243, 472, 743, 885
HpyCH4III	ACNGT	3 cut(s)	55, 800, 895
HpyCH4IV	ACGT	2 cut(s)	370, 954
HpyCH4V	TGCA	9 cut(s)	166, 221, 401, 523, 623, 644, 854, 928, 986
HpyF3I	CTNAG	5 cut(s)	377, 450, 705, 765, 990
HpySE526I	ACGT	2 cut(s)	370, 954
Hsp92II	CATG	3 cut(s)	568, 925, 932
HspAI	GCGC	1 cut(s)	580
Kpn2I	TCCGGA	1 cut(s)	226
Ksp22I	TGATCA	2 cut(s)	310, 697
Kzo9I	GATC	6 cut(s)	310, 454, 697, 814, 871, 931
LmnI	GCTCC	2 cut(s)	48, 229
Lsp1109I	GCAGC	3 cut(s)	121, 649, 912
LweI	GCATC	5 cut(s)	175, 230, 262, 510, 988
MaeI	CTAG	2 cut(s)	12, 635
MaeII	ACGT	2 cut(s)	370, 954
MaeIII	GTNAC	3 cut(s)	437, 670, 961
MalI	GATC	6 cut(s)	312, 456, 699, 816, 873, 933
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	6 cut(s)	310, 454, 697, 814, 871, 931
MboII	GAAGA	7 cut(s)	177, 204, 277, 494, 529, 734, 1007
MfeI	CAATTG	1 cut(s)	1006
MflI	RGATCY	2 cut(s)	454, 871
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	4 cut(s)	616, 649, 693, 1006
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	9 cut(s)	123, 248, 374, 377, 445, 545, 775, 894, 985
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	46, 888, 915
MunI	CAATTG	1 cut(s)	1006
MvaI	CCWGG	3 cut(s)	46, 888, 915
MvnI	CGCG	1 cut(s)	582
NdeII	GATC	6 cut(s)	310, 454, 697, 814, 871, 931
NlaIII	CATG	3 cut(s)	568, 925, 932
NlaIV	GGNNCC	2 cut(s)	231, 259
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	925
NspV	TTCGAA	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	486
PkrI	GCNGC	5 cut(s)	67, 108, 111, 664, 927
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	44, 886, 913
PspGI	CCWGG	3 cut(s)	44, 886, 913
PspN4I	GGNNCC	2 cut(s)	231, 259
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	454, 871
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	3 cut(s)	373, 388, 797
RsaNI	GTAC	3 cut(s)	372, 387, 796
SatI	GCNGC	5 cut(s)	66, 107, 110, 663, 926
Sau3AI	GATC	6 cut(s)	310, 454, 697, 814, 871, 931
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	3 cut(s)	46, 888, 915
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	5 cut(s)	175, 230, 262, 510, 988
SfuI	TTCGAA	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	900, 908, 966
SmoI	CTYRAG	3 cut(s)	900, 908, 966
Sse9I	AATT	4 cut(s)	616, 649, 693, 1006
SsiI	CCGC	5 cut(s)	66, 107, 538, 548, 974
SspMI	CTAG	2 cut(s)	12, 635
StyD4I	CCNGG	3 cut(s)	44, 886, 913
TaaI	ACNGT	3 cut(s)	55, 800, 895
TaiI	ACGT	2 cut(s)	373, 957
TaqI	TCGA	2 cut(s)	32, 934
TasI	AATT	4 cut(s)	616, 649, 693, 1006
TauI	GCSGC	2 cut(s)	68, 109
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	3 cut(s)	109, 662, 925
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	204, 840
TspRI	CASTG	1 cut(s)	898
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	1 cut(s)	925
XmiI	GTMKAC	2 cut(s)	350, 446
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	2 cut(s)	12, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.