Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Reverse (-)

20697079 .. 20700090

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTTGGTGTCTAGGGTTTTAGCTCGGTCCTCGAGGACCCTCCCCAGGAGCACAATGCTCTTGGCGGCTCCGCAGAATCATCACTTGCCAATCCTCTCCAATCAGTCCCAAGCTTTGATCCACGATTTTTCCTCTAAGATTGTTCCGAGGCAGGTGTCCCTATTGCATCATTCAACCCCAACTTCTTCTATCTCTCAAATATTTGGGTTCTCTTCGTCTGCATCGCCACATCCTGAAAAGGATCATGGAAGTGCTGTAGAGAATGGCAGCGCTTCTACAAATGGAGAGCCAGAAAAAGCAAGTGGAGACGCGAAAGTTGCTGATCAAGCAAAAGAGTCAGATTCAGAGAGTGACGGTGACTTAACAATGGATGACCTGGTAAAACTTGTTGCTGAGAAGGAAGATCTTCTGAAGGAGAAACATGAAGAATTCAAGAAAATGCAAGATAAATTCCTCCGAAGTTACGCAGAGATTGAAAATGTCATGGAGAGGACAAAGCGTGAGGCAGAGAATTCAAAGAAATTTGCCATACAGAGTTTTGCAAAGAGTTTACTAGATGTTGCAGACAATCTAGGCAGAGCTTCTTCAGTTGTCAAAGAAAGTTTCTCAAAACTTGACGAGTCCAAGGACACTGGTGCAGCATTCCCACTTCTGAAAACACTTCTAGAAGGTGTTGAAATGACCGAGAAACAGCTTTTAGAGGTATTTAGAAAGTACGGAATAGAAAAGTATGATCGTACAAATGAAGCATTTGACCCAAACAGGCATAATGCAGTATTCAGTTTACAAGATGCTTCCAAGCCTCCGGGTACTATTGCTGTGGTTCTCAAGCCGGGATACATGCTTCATGATCGAGTTGTTCGACCAGCTGAAGTTGGTGTAACAACGGAAGCGGAGAACAATGCTGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

305

Amino Acids

33.51

Weight (kDa)

5.74

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
AbsI	CCTCGAGG	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	142
AccII	CGCG	1 cut(s)	311
AciI	CCGC	3 cut(s)	65, 71, 893
AclWI	GGATC	2 cut(s)	112, 249
AcsI	RAATTY	4 cut(s)	428, 449, 511, 521
AcuI	CTGAAG	3 cut(s)	431, 570, 891
AfaI	GTAC	3 cut(s)	716, 739, 811
AfeI	AGCGCT	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	174, 433, 476, 516, 677
AjnI	CCWGG	2 cut(s)	44, 375
AluBI	AGCT	5 cut(s)	23, 113, 581, 694, 869
AluI	AGCT	5 cut(s)	23, 113, 581, 694, 869
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	112, 249
Ama87I	CYCGRG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	267, 638
ApoI	RAATTY	4 cut(s)	428, 449, 511, 521
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	27, 36
AsuC2I	CCSGG	2 cut(s)	807, 834
AsuHPI	GGTGA	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	27, 36
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	279, 650
BciT130I	CCWGG	2 cut(s)	46, 377
BciVI	GTATCC	1 cut(s)	830
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	2 cut(s)	807, 834
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	4 cut(s)	12, 554, 572, 665
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	830
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	3 cut(s)	66, 268, 639
BlsI	GCNGC	3 cut(s)	67, 269, 640
Bme1390I	CCNGG	4 cut(s)	46, 377, 807, 834
Bme18I	GGWCC	2 cut(s)	27, 36
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	27, 36
BmiI	GGNNCC	2 cut(s)	38, 69
BmrFI	CCNGG	4 cut(s)	46, 377, 807, 834
BmsI	GCATC	3 cut(s)	175, 230, 781
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	2 cut(s)	807, 834
BsaJI	CCNNGG	3 cut(s)	44, 146, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	637
BseBI	CCWGG	2 cut(s)	46, 377
BseDI	CCNNGG	3 cut(s)	44, 146, 624
BseGI	GGATG	2 cut(s)	229, 376
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	637
BseXI	GCAGC	2 cut(s)	279, 650
BsgI	GTGCAG	1 cut(s)	657
Bsh1236I	CGCG	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	806, 833
BslFI	GGGAC	2 cut(s)	91, 142
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	2 cut(s)	91, 142
BsmI	GAATGC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	6 cut(s)	117, 241, 322, 403, 733, 850
BspACI	CCGC	3 cut(s)	65, 71, 893
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	38, 69
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	2 cut(s)	112, 249
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	3 cut(s)	44, 146, 624
BssMI	GATC	6 cut(s)	117, 241, 322, 403, 733, 850
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	46, 377
Bst4CI	ACNGT	2 cut(s)	356, 911
Bst6I	CTCTTC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	135, 393
BstF5I	GGATG	2 cut(s)	229, 376
BstFNI	CGCG	1 cut(s)	311
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	6 cut(s)	120, 244, 325, 406, 736, 853
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	6 cut(s)	117, 241, 322, 403, 733, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 326
BstNI	CCWGG	2 cut(s)	46, 377
BstNSI	RCATGY	1 cut(s)	844
BstSCI	CCNGG	4 cut(s)	44, 375, 805, 832
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	279, 650
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	830
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	229, 376
BtsIMutI	CAGTG	1 cut(s)	630
BveI	ACCTGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	27, 36
CseI	GACGC	1 cut(s)	317
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	715, 738, 810
CviAII	CATG	5 cut(s)	245, 422, 484, 841, 848
CviJI	RGCY	9 cut(s)	23, 68, 113, 289, 581, 694, 802, 832, 869
CviKI_1	RGCY	9 cut(s)	23, 68, 113, 289, 581, 694, 802, 832, 869
CviQI	GTAC	3 cut(s)	715, 738, 810
DdeI	CTNAG	2 cut(s)	135, 393
DpnI	GATC	6 cut(s)	119, 243, 324, 405, 735, 852
DpnII	GATC	6 cut(s)	117, 241, 322, 403, 733, 850
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	27, 36
Eco47III	AGCGCT	1 cut(s)	271
Eco57I	CTGAAG	3 cut(s)	431, 570, 891
Eco88I	CYCGRG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRI	GAATTC	2 cut(s)	428, 511
EcoRII	CCWGG	2 cut(s)	44, 375
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	5 cut(s)	248, 425, 487, 844, 851
FaiI	YATR	8 cut(s)	246, 423, 485, 530, 732, 768, 842, 849
FaqI	GGGAC	2 cut(s)	91, 142
FatI	CATG	5 cut(s)	244, 421, 483, 840, 847
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	3 cut(s)	66, 268, 639
FokI	GGATG	2 cut(s)	216, 383
Fsp4HI	GCNGC	3 cut(s)	66, 268, 639
FspBI	CTAG	4 cut(s)	12, 554, 572, 665
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	66, 268, 639
HaeII	RGCGCY	1 cut(s)	273
HapII	CCGG	2 cut(s)	806, 833
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	5 cut(s)	248, 425, 487, 844, 851
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	4 cut(s)	76, 335, 341, 620
HpaII	CCGG	2 cut(s)	806, 833
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	551, 785
Hpy188I	TCNGA	6 cut(s)	147, 340, 346, 411, 458, 654
Hpy188III	TCNNGA	4 cut(s)	233, 433, 665, 848
Hpy8I	GTNNAC	2 cut(s)	551, 785
HpyAV	CCTTC	3 cut(s)	391, 406, 662
HpyCH4III	ACNGT	2 cut(s)	356, 911
HpyCH4V	TGCA	7 cut(s)	166, 221, 442, 542, 563, 638, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 326
HpyF3I	CTNAG	2 cut(s)	135, 393
Hsp92II	CATG	5 cut(s)	248, 425, 487, 844, 851
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	6 cut(s)	117, 241, 322, 403, 733, 850
LmnI	GCTCC	2 cut(s)	48, 73
Lsp1109I	GCAGC	2 cut(s)	279, 650
LweI	GCATC	3 cut(s)	175, 230, 781
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	4 cut(s)	12, 554, 572, 665
MaeIII	GTNAC	4 cut(s)	350, 356, 461, 880
MalI	GATC	6 cut(s)	119, 243, 324, 405, 735, 852
MboI	GATC	6 cut(s)	117, 241, 322, 403, 733, 850
MboII	GAAGA	6 cut(s)	177, 204, 398, 413, 437, 576
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	4 cut(s)	428, 449, 511, 521
MlyI	GAGTC	2 cut(s)	344, 629
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	2 cut(s)	362, 913
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	2 cut(s)	806, 833
MspR9I	CCNGG	4 cut(s)	46, 377, 807, 834
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	2 cut(s)	46, 377
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	317, 326
NciI	CCSGG	2 cut(s)	807, 834
NdeII	GATC	6 cut(s)	117, 241, 322, 403, 733, 850
NlaIII	CATG	5 cut(s)	248, 425, 487, 844, 851
NlaIV	GGNNCC	2 cut(s)	38, 69
NmuCI	GTSAC	2 cut(s)	350, 356
NspI	RCATGY	1 cut(s)	844
PaeR7I	CTCGAG	1 cut(s)	31
PagI	TCATGA	1 cut(s)	847
PaqCI	CACCTGC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PctI	GAATGC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	76, 341
PkrI	GCNGC	3 cut(s)	67, 269, 640
PleI	GAGTC	2 cut(s)	343, 628
PpsI	GAGTC	2 cut(s)	343, 628
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	44, 375
PspGI	CCWGG	2 cut(s)	44, 375
PspN4I	GGNNCC	2 cut(s)	38, 69
PspPI	GGNCC	2 cut(s)	27, 36
PspPPI	RGGWCCY	1 cut(s)	36
PspXI	VCTCGAGB	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	3 cut(s)	716, 739, 811
RsaNI	GTAC	3 cut(s)	715, 738, 810
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	362, 913
SatI	GCNGC	3 cut(s)	66, 268, 639
Sau3AI	GATC	6 cut(s)	117, 241, 322, 403, 733, 850
Sau96I	GGNCC	2 cut(s)	27, 36
SchI	GAGTC	2 cut(s)	344, 629
ScrFI	CCNGG	4 cut(s)	46, 377, 807, 834
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	25, 115, 156, 378, 583, 673, 696, 705, 871
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	175, 230, 781
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	27, 36
SlaI	CTCGAG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	31, 827
SmoI	CTYRAG	2 cut(s)	31, 827
Sse9I	AATT	4 cut(s)	428, 449, 511, 521
SsiI	CCGC	3 cut(s)	65, 71, 893
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	4 cut(s)	12, 554, 572, 665
StyD4I	CCNGG	4 cut(s)	44, 375, 805, 832
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	356, 911
TaqI	TCGA	3 cut(s)	32, 853, 862
TaqII	GACCGA	2 cut(s)	15, 698
TasI	AATT	4 cut(s)	428, 449, 511, 521
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	76, 341
Tru1I	TTAA	2 cut(s)	362, 913
Tru9I	TTAA	2 cut(s)	362, 913
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	350, 356
TseI	GCWGC	2 cut(s)	267, 638
Tsp45I	GTSAC	2 cut(s)	350, 356
TspDTI	ATGAA	3 cut(s)	438, 759, 836
TspGWI	ACGGA	2 cut(s)	732, 902
TspRI	CASTG	1 cut(s)	637
VpaK11BI	GGWCC	2 cut(s)	27, 36
XapI	RAATTY	4 cut(s)	428, 449, 511, 521
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	1 cut(s)	844
XhoI	CTCGAG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	4 cut(s)	12, 554, 572, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.