Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

22394550 .. 22396572

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTGGTGTCTAGGGTTTTATCAAGAGTTTCTCGCAGCGCAGGCTTACGCTCGTCTTTCTCCTCCGTCGTTACTCCGAAGAGGAATCAGATTCCGATTGTTGCAAGCCGATTTCACTCCCTCGTTCACGGAACCCCCAACAAGCTTGTTGCAGTTCCAGTGTCGCTCCGAAACCATGGAACTCTAGATTTGAATGTTCTTCAAAGGTTCGGCTTTTTTTCCTCTTCCTCAGCTGAACCGAAGGGAAATGAGAGTAACACCGAAGTACCAAAGACCGGCGAAACTTCTGAGAATGTGGAGGTGGGGAAAGCTACAGATGCAGAGATTGACTTCGACGATTTGTCAAGAGACGATTTAGTGAAGCTTGTGAGTGAGAAGGAAGATCTTTTGAAGGTTCAGCAGAAAGACATAATGGAAATGAAAGATAAATTTCTTCGCACTTATGCTGAGCAGCAGAATCTTATGGACAGGACTAACCGTAATGCTGAAAGCGCCAAAAAGTTCGCTGTACAGAACTTTGCAACGAGCCTTTTGGATGTGGCGGATAATCTTGAAAGAGCTTCTTCTGTTGTCAAAGAGAGTTTTTCGAAGATCGACACTTCAAAAGATTTGGCTGGTGCTACTCCACTGTTAAAAAACCTATTAGAAGGAGTGGAGATGACTGAGAAACAATTAGCTGAGGTGTTTAGAAAAGCTGGTTTGGTGAAAGAAGATCCTTTAAATGAACCGTTTAATCCAAACAGACATAACGCAGTGTTCCAAGTCCCAGATGCTTCCAAGCCAAAAGGCACAATTGCTCATGTCCTAAAGTCTGGATACTCATTGTACGATCGAGTTATAAGGCCAGCTGAGGTTGGTGTTACTTGCGCCGTGGAGAATCAAGAAGGCGGCAAAGAGTCTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

302

Amino Acids

33.2

Weight (kDa)

6.56

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	125 - 287	3.4e-45	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	839
AciI	CCGC	2 cut(s)	542, 888
AclWI	GGATC	1 cut(s)	707
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	3 cut(s)	267, 510, 827
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	5 cut(s)	193, 203, 391, 554, 603
AhdI	GACNNNNNGTC	1 cut(s)	340
AluBI	AGCT	9 cut(s)	145, 233, 311, 364, 560, 677, 695, 848, 905
AluI	AGCT	9 cut(s)	145, 233, 311, 364, 560, 677, 695, 848, 905
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	707
AoxI	GGCC	1 cut(s)	842
ApeKI	GCWGC	3 cut(s)	36, 451, 902
ApoI	RAATTY	1 cut(s)	428
AspLEI	GCGC	3 cut(s)	41, 494, 869
AsuHPI	GGTGA	1 cut(s)	715
AsuII	TTCGAA	1 cut(s)	587
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BbvCI	CCTCAGC	3 cut(s)	229, 678, 849
BbvI	GCAGC	2 cut(s)	48, 463
BceAI	ACGGC	1 cut(s)	854
BciVI	GTATCC	1 cut(s)	809
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	2 cut(s)	12, 185
BfmI	CTRYAG	2 cut(s)	312, 900
BfoI	RGCGCY	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	809
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	4 cut(s)	37, 452, 889, 903
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	4 cut(s)	38, 453, 890, 904
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	2 cut(s)	307, 760
Bpu10I	CCTNAGC	3 cut(s)	229, 678, 849
Bpu1102I	GCTNAGC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	587
BsaJI	CCNNGG	2 cut(s)	175, 870
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	175, 870
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	6 cut(s)	243, 279, 438, 654, 669, 840
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	48, 463
Bsh1285I	CGRYCG	1 cut(s)	832
BshFI	GGCC	1 cut(s)	844
BsiEI	CGRYCG	1 cut(s)	832
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	342
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	749
BsnI	GGCC	1 cut(s)	844
Bsp119I	TTCGAA	1 cut(s)	587
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	382, 591, 712, 829
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	2 cut(s)	542, 888
BspANI	GGCC	1 cut(s)	844
BspCNI	CTCAG	6 cut(s)	242, 280, 439, 655, 670, 841
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	904
BspPI	GGATC	1 cut(s)	707
BspT104I	TTCGAA	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	175, 870
BssMI	GATC	4 cut(s)	382, 591, 712, 829
BssT1I	CCWWGG	1 cut(s)	175
Bst4CI	ACNGT	3 cut(s)	479, 630, 729
Bst6I	CTCTTC	2 cut(s)	74, 229
BstAUI	TGTACA	1 cut(s)	508
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	43, 106, 846
BstDEI	CTNAG	6 cut(s)	229, 288, 447, 663, 678, 849
BstDSI	CCRYGG	2 cut(s)	175, 870
BstF5I	GGATG	1 cut(s)	541
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	3 cut(s)	41, 494, 869
BstKTI	GATC	4 cut(s)	385, 594, 715, 832
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	4 cut(s)	382, 591, 712, 829
BstMCI	CGRYCG	1 cut(s)	832
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 317, 491
BstSFI	CTRYAG	2 cut(s)	312, 900
BstV1I	GCAGC	2 cut(s)	48, 463
BstX2I	RGATCY	2 cut(s)	382, 712
BstYI	RGATCY	2 cut(s)	382, 712
BsuI	GTATCC	1 cut(s)	809
BsuRI	GGCC	1 cut(s)	844
BtgI	CCRYGG	2 cut(s)	175, 870
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	3 cut(s)	165, 626, 759
Cac8I	GCNNGC	3 cut(s)	43, 106, 846
CfoI	GCGC	3 cut(s)	41, 494, 869
Cfr10I	RCCGGY	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	266, 509, 826
CviAII	CATG	2 cut(s)	176, 800
CviQI	GTAC	3 cut(s)	266, 509, 826
DdeI	CTNAG	6 cut(s)	229, 288, 447, 663, 678, 849
DpnI	GATC	4 cut(s)	384, 593, 714, 831
DpnII	GATC	4 cut(s)	382, 591, 712, 829
DraI	TTTAAA	1 cut(s)	720
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	74, 229
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	2 cut(s)	74, 229
EciI	GGCGGA	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	179, 803
FaiI	YATR	7 cut(s)	177, 410, 444, 464, 747, 801, 839
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	2 cut(s)	175, 799
Fnu4HI	GCNGC	4 cut(s)	37, 452, 889, 903
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	4 cut(s)	37, 452, 889, 903
FspBI	CTAG	2 cut(s)	12, 185
GlaI	GCGC	3 cut(s)	40, 493, 868
GluI	GCNGC	4 cut(s)	37, 452, 889, 903
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	844
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	3 cut(s)	41, 494, 869
Hin1II	CATG	2 cut(s)	179, 803
Hin6I	GCGC	3 cut(s)	39, 492, 867
HinP1I	GCGC	3 cut(s)	39, 492, 867
HindIII	AAGCTT	2 cut(s)	143, 362
HinfI	GANTC	5 cut(s)	85, 91, 457, 877, 896
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	78, 90, 96, 170, 289
Hpy188III	TCNNGA	6 cut(s)	24, 185, 345, 551, 813, 881
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	2 cut(s)	71, 338
HpyAV	CCTTC	5 cut(s)	235, 370, 385, 641, 878
HpyCH4III	ACNGT	3 cut(s)	479, 630, 729
HpyCH4V	TGCA	5 cut(s)	104, 152, 320, 521, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 317, 491
HpyF3I	CTNAG	6 cut(s)	229, 288, 447, 663, 678, 849
Hsp92II	CATG	2 cut(s)	179, 803
HspAI	GCGC	3 cut(s)	39, 492, 867
Kzo9I	GATC	4 cut(s)	382, 591, 712, 829
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	9 cut(s)	27, 171, 289, 454, 600, 681, 780, 798, 858
Lsp1109I	GCAGC	2 cut(s)	48, 463
LweI	GCATC	2 cut(s)	307, 760
MaeI	CTAG	2 cut(s)	12, 185
MaeIII	GTNAC	3 cut(s)	70, 254, 859
MalI	GATC	4 cut(s)	384, 593, 714, 831
MboI	GATC	4 cut(s)	382, 591, 712, 829
MboII	GAAGA	8 cut(s)	91, 191, 216, 392, 425, 555, 601, 722
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	2 cut(s)	382, 712
MluCI	AATT	3 cut(s)	428, 671, 792
MlyI	GAGTC	1 cut(s)	905
MnlI	CCTC	8 cut(s)	73, 75, 131, 232, 238, 292, 673, 844
MseI	TTAA	3 cut(s)	632, 719, 732
MspA1I	CMGCKG	2 cut(s)	233, 848
MspI	CCGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	792
MwoI	GCNNNNNNNGC	3 cut(s)	42, 317, 491
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	4 cut(s)	382, 591, 712, 829
NlaIII	CATG	2 cut(s)	179, 803
NlaIV	GGNNCC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	587
PfeI	GAWTC	4 cut(s)	85, 91, 457, 877
PkrI	GCNGC	4 cut(s)	38, 453, 890, 904
Ple19I	CGATCG	1 cut(s)	832
PleI	GAGTC	1 cut(s)	904
PpsI	GAGTC	1 cut(s)	904
PsiI	TTATAA	1 cut(s)	839
PspN4I	GGNNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	2 cut(s)	382, 712
PvuI	CGATCG	1 cut(s)	832
PvuII	CAGCTG	2 cut(s)	233, 848
RsaI	GTAC	3 cut(s)	267, 510, 827
RsaNI	GTAC	3 cut(s)	266, 509, 826
SaqAI	TTAA	3 cut(s)	632, 719, 732
SatI	GCNGC	4 cut(s)	37, 452, 889, 903
Sau3AI	GATC	4 cut(s)	382, 591, 712, 829
SchI	GAGTC	1 cut(s)	905
SfaNI	GCATC	2 cut(s)	307, 760
SfcI	CTRYAG	2 cut(s)	312, 900
SfuI	TTCGAA	1 cut(s)	587
Sse9I	AATT	3 cut(s)	428, 671, 792
SsiI	CCGC	2 cut(s)	542, 888
SspMI	CTAG	2 cut(s)	12, 185
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	479, 630, 729
TaqI	TCGA	4 cut(s)	333, 587, 594, 832
TasI	AATT	3 cut(s)	428, 671, 792
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	1 cut(s)	891
TfiI	GAWTC	4 cut(s)	85, 91, 457, 877
Tru1I	TTAA	3 cut(s)	632, 719, 732
Tru9I	TTAA	3 cut(s)	632, 719, 732
TscAI	CASTG	3 cut(s)	165, 633, 759
TseI	GCWGC	3 cut(s)	36, 451, 902
TspDTI	ATGAA	2 cut(s)	434, 738
TspGWI	ACGGA	2 cut(s)	55, 144
TspRI	CASTG	3 cut(s)	165, 633, 759
XapI	RAATTY	1 cut(s)	428
XbaI	TCTAGA	1 cut(s)	184
XspI	CTAG	2 cut(s)	12, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.