Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Reverse (-)

26589157 .. 26592958

Gene Structure 3802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1193500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTTCGTGTCTAGGGTTTTAGCTCGGGCCTCGAGGACCCTCCCGAGGAGCGCAATGCTCGTGGCTGCTCCGCAGAATCATCACTTGCCAATCCTGTGCAATCAGTCCCATGCTCTGATCCACGATTTTTCCTCTAAGATTGTTCCGAGGCAGGTGTCCCTATTGCATCATGCAACCCCTACTTCTTCTATCTCTCAAATTTTTGGGTTCTCTTCTTCTGCATCGCCACAGCCTGAAAAGGAACATGGAAGTGCTGTAGAGAATGGTGGCGCTTCAACAAATGGAGAGCCAGAAAAAGCAAGTGGAGATGCGAAAGTAGCTGATCAAACGAAAGAGTCAGATTCAGAGAGTGAGGGTGATTTAACTATGGATGACCTGGTAAAACTTGTGACTGAGAAGGAAGATCTTCTGAAGGAGAAACATGAAGAATTCAAGAAAATGCAAGATAAATTCCTCCGAAGTTACGCAGAGATTGAAAATGTCATGGAGAGAACAAAGCGTGAAGCAGAGAATTCAAAGAAATTTGCCATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATCTGGCCAGGGCTTCTTCAGTTGTCAAAGAAAGTTTCTCAAAACTTGACGAGTCCAAGGACTCTGGTGGAGCATTCCCACTTCTGAAAACACTTCTAGAAGGTGTTGAAATGACCGAGAAACAACTTTTAGAGGTATTTAGAAAGTATGGAGTAGAAAAGTATGATCCTACAAATGAAGCATTTGACCCAAACAGGCATAACGCAGTATTCAGTTTACAAGATGCTTCCAAGCCTCCAGGCACTGTTGCGGTGGTTCTCAAGGCGGGATACATGCTGCATGAACGAGTTGTTCGGCCAGCTGAAGTTGGTGTAACTACGGAAGCGGAGAACAATGCAGACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

305

Amino Acids

33.48

Weight (kDa)

5.65

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	131 - 295	1.8e-47	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
AbsI	CCTCGAGG	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	142
AciI	CCGC	5 cut(s)	71, 563, 818, 833, 893
AclWI	GGATC	2 cut(s)	112, 728
AcoI	YGGCCR	2 cut(s)	573, 863
AcsI	RAATTY	6 cut(s)	198, 428, 449, 511, 521, 535
AcuI	CTGAAG	3 cut(s)	431, 570, 891
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	276, 433, 476, 516, 677
AjnI	CCWGG	3 cut(s)	375, 575, 805
AluBI	AGCT	3 cut(s)	23, 320, 869
AluI	AGCT	3 cut(s)	23, 320, 869
AlwI	GGATC	2 cut(s)	112, 728
AlwNI	CAGNNNCTG	1 cut(s)	812
Ama87I	CYCGRG	3 cut(s)	24, 31, 43
AoxI	GGCC	3 cut(s)	27, 573, 863
ApeKI	GCWGC	2 cut(s)	65, 844
ApoI	RAATTY	6 cut(s)	198, 428, 449, 511, 521, 535
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	53, 272
AspS9I	GGNCC	2 cut(s)	27, 36
AsuHPI	GGTGA	1 cut(s)	368
AvaI	CYCGRG	3 cut(s)	24, 31, 43
AvaII	GGWCC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	575
BauI	CACGAG	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	52, 831
BciT130I	CCWGG	3 cut(s)	377, 577, 807
BciVI	GTATCC	1 cut(s)	830
BclI	TGATCA	1 cut(s)	322
BfaI	CTAG	3 cut(s)	12, 554, 665
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	830
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	66, 845
BlsI	GCNGC	2 cut(s)	67, 846
Bme1390I	CCNGG	3 cut(s)	377, 577, 807
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	3 cut(s)	24, 31, 43
BmgT120I	GGNCC	2 cut(s)	27, 36
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	377, 577, 807
BmsI	GCATC	4 cut(s)	175, 230, 298, 781
BpmI	CTGGAG	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	812
BsaJI	CCNNGG	4 cut(s)	44, 146, 576, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	3 cut(s)	377, 577, 807
BseDI	CCNNGG	4 cut(s)	44, 146, 576, 624
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	52, 831
BshFI	GGCC	3 cut(s)	29, 575, 865
BsiHKCI	CYCGRG	3 cut(s)	24, 31, 43
BslFI	GGGAC	2 cut(s)	91, 142
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	2 cut(s)	91, 142
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	3 cut(s)	29, 575, 865
BsoBI	CYCGRG	3 cut(s)	24, 31, 43
Bsp143I	GATC	4 cut(s)	117, 322, 403, 733
BspACI	CCGC	5 cut(s)	71, 563, 818, 833, 893
BspANI	GGCC	3 cut(s)	29, 575, 865
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	38
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	2 cut(s)	112, 728
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	4 cut(s)	44, 146, 576, 624
BssMI	GATC	4 cut(s)	117, 322, 403, 733
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	3 cut(s)	377, 577, 807
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	867
BstDEI	CTNAG	2 cut(s)	135, 393
BstF5I	GGATG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	53, 272
BstKTI	GATC	4 cut(s)	120, 325, 406, 736
BstMBI	GATC	4 cut(s)	117, 322, 403, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	3 cut(s)	377, 577, 807
BstNSI	RCATGY	1 cut(s)	844
BstSCI	CCNGG	3 cut(s)	375, 575, 805
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	52, 831
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	3 cut(s)	29, 575, 865
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	810
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	867
CaiI	CAGNNNCTG	1 cut(s)	812
CfoI	GCGC	2 cut(s)	53, 272
Cfr13I	GGNCC	2 cut(s)	27, 36
CsiI	ACCWGGT	1 cut(s)	375
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	7 cut(s)	110, 170, 245, 422, 484, 841, 848
DdeI	CTNAG	2 cut(s)	135, 393
DpnI	GATC	4 cut(s)	119, 324, 405, 735
DpnII	GATC	4 cut(s)	117, 322, 403, 733
EaeI	YGGCCR	2 cut(s)	573, 863
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	3 cut(s)	431, 570, 891
Eco88I	CYCGRG	3 cut(s)	24, 31, 43
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRI	GAATTC	2 cut(s)	428, 511
EcoRII	CCWGG	3 cut(s)	375, 575, 805
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	7 cut(s)	113, 173, 248, 425, 487, 844, 851
FaqI	GGGAC	2 cut(s)	91, 142
FatI	CATG	7 cut(s)	109, 169, 244, 421, 483, 840, 847
FauI	CCCGC	1 cut(s)	826
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	66, 845
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	66, 845
FspBI	CTAG	3 cut(s)	12, 554, 665
GlaI	GCGC	2 cut(s)	52, 271
GluI	GCNGC	2 cut(s)	66, 845
GsuI	CTGGAG	1 cut(s)	789
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	29, 575, 865
HhaI	GCGC	2 cut(s)	53, 272
Hin1II	CATG	7 cut(s)	113, 173, 248, 425, 487, 844, 851
Hin6I	GCGC	2 cut(s)	51, 270
HinP1I	GCGC	2 cut(s)	51, 270
HinfI	GANTC	5 cut(s)	76, 335, 341, 620, 629
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	551, 785
Hpy188I	TCNGA	7 cut(s)	117, 147, 340, 346, 411, 458, 654
Hpy188III	TCNNGA	3 cut(s)	43, 433, 665
Hpy8I	GTNNAC	2 cut(s)	551, 785
HpyAV	CCTTC	3 cut(s)	391, 406, 662
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4V	TGCA	8 cut(s)	99, 166, 173, 221, 442, 542, 847, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	135, 393
Hsp92II	CATG	7 cut(s)	113, 173, 248, 425, 487, 844, 851
HspAI	GCGC	2 cut(s)	51, 270
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	117, 322, 403, 733
LmnI	GCTCC	3 cut(s)	48, 73, 638
Lsp1109I	GCAGC	2 cut(s)	52, 831
LweI	GCATC	4 cut(s)	175, 230, 298, 781
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	3 cut(s)	12, 554, 665
MaeIII	GTNAC	3 cut(s)	388, 461, 880
MalI	GATC	4 cut(s)	119, 324, 405, 735
MboI	GATC	4 cut(s)	117, 322, 403, 733
MboII	GAAGA	7 cut(s)	177, 204, 207, 398, 413, 437, 576
MflI	RGATCY	1 cut(s)	403
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	7 cut(s)	198, 428, 449, 511, 521, 535, 910
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	3 cut(s)	344, 623, 629
Mox20I	TGGCCA	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	2 cut(s)	362, 913
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	869
MspR9I	CCNGG	3 cut(s)	377, 577, 807
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	3 cut(s)	377, 577, 807
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	4 cut(s)	117, 322, 403, 733
NlaIII	CATG	7 cut(s)	113, 173, 248, 425, 487, 844, 851
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	844
PaeR7I	CTCGAG	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	142
PctI	GAATGC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	76, 341
PkrI	GCNGC	2 cut(s)	67, 846
PleI	GAGTC	3 cut(s)	343, 623, 628
PpsI	GAGTC	3 cut(s)	343, 623, 628
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	375, 575, 805
PspGI	CCWGG	3 cut(s)	375, 575, 805
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	27, 36
PspPPI	RGGWCCY	1 cut(s)	36
PspXI	VCTCGAGB	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	869
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	362, 913
SatI	GCNGC	2 cut(s)	66, 845
Sau3AI	GATC	4 cut(s)	117, 322, 403, 733
Sau96I	GGNCC	2 cut(s)	27, 36
SchI	GAGTC	3 cut(s)	344, 623, 629
ScrFI	CCNGG	3 cut(s)	377, 577, 807
SetI	ASST	7 cut(s)	25, 156, 322, 378, 673, 705, 871
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	4 cut(s)	175, 230, 298, 781
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	31, 827
SmoI	CTYRAG	2 cut(s)	31, 827
Sse9I	AATT	7 cut(s)	198, 428, 449, 511, 521, 535, 910
SsiI	CCGC	5 cut(s)	71, 563, 818, 833, 893
SspMI	CTAG	3 cut(s)	12, 554, 665
StyD4I	CCNGG	3 cut(s)	375, 575, 805
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	1 cut(s)	814
TaqI	TCGA	1 cut(s)	32
TaqII	GACCGA	1 cut(s)	698
TasI	AATT	7 cut(s)	198, 428, 449, 511, 521, 535, 910
TfiI	GAWTC	2 cut(s)	76, 341
Tru1I	TTAA	2 cut(s)	362, 913
Tru9I	TTAA	2 cut(s)	362, 913
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	65, 844
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	3 cut(s)	438, 759, 864
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	1 cut(s)	817
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	6 cut(s)	198, 428, 449, 511, 521, 535
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	1 cut(s)	844
XhoI	CTCGAG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	3 cut(s)	12, 554, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.