Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

19023487 .. 19025489

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCATAATTATGACACCGGCCTTGAATCAAGGAACACCCTTCCTTTTAACAAAGACAACCATTTGATTGGTCCAATTCCCAAAAGCTTGAAAACTAGCACAAAGTTATTCAGAGTCCGACTCAATGGAAACCAATTGACAAGCAATCTTTCAGAAGACTTTGGAGTCTATCCAAATCTTCGATTTCTAGACCTGAGCGACAATAACCTGTATGGTGAAATCTCAAGCAACTGGGGACAGTGCCCACAATTGACAACCTTACTACTTGCGGGAAACAACTTAACTGGCAGTATATCACCTGAGATTGGAAATGCAAGCCAAATTCATGAGCTCGATCTTTCTTCTAATGGTTTAGATGGGATGATTCCAGAAGAATTTGGAAGATTGACTTCTTTGGTGAAGCTGAAGTTAGATGGCACTCAACTTTCAGGTAGTGTACCATCAGAATTTGGATCATTGACTGATCTTGAATATCATGATCTATCAAGAAACACATTGAACTCGTCAATTCCAAGCGTTCTGGGTGATTTGCTCAAACTACACTACTTGAATTTGAGCAACAATAAGTTTGGACAAAGAATTCCTGTTCACTTGGGGAAGTTAGCTCACCTGTCCCAACTAGATTTGAGTCAAAACTCAATCGAGGGGGAGATACCATCAGAAGTCAGCAATATGGAGAGTTTGGAGATGTTGAATTTGTCACACAATAATCTTTCTGGTTCCATTCCAACAAGTTTTGGAAATATGCGCGGCTTGTCGTATGTTGACATATCTTACAATGAGTTGGAAGGTCCACTTCCCAACAGCAAAGCATTTCAAGATGCTGCCCCAGAAGCATTACAAGGAAACAAGGGATTGTGTGGCAACGTTGAAGATTTGTGTTGGAAGTATAGGATCAGCTGTCAACATTGGCTGCTGTCAATGTTGGCTGGCTGCTGCATTCACATATGCATTTACACATGTTGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

323

Amino Acids

35.5

Weight (kDa)

5.23

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	56 - 158	1.6e-06	Leucine-rich repeat region
LRR_8	PF13855	82 - 142	1.8e-07	Leucine rich repeat
LRR_14	PF23598	172 - 255	4.8e-11	Leucine-rich repeat region
LRR_8	PF13855	199 - 238	2.4e-06	Leucine rich repeat
LRR_8	PF13855	203 - 262	6.3e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccII	CGCG	1 cut(s)	750
AciI	CCGC	2 cut(s)	269, 750
AclI	AACGTT	1 cut(s)	867
AclWI	GGATC	2 cut(s)	460, 902
AcsI	RAATTY	6 cut(s)	321, 374, 446, 550, 579, 694
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	959
AgsI	TTSAA	8 cut(s)	26, 91, 470, 499, 550, 694, 818, 872
AluBI	AGCT	5 cut(s)	87, 331, 403, 605, 900
AluI	AGCT	5 cut(s)	87, 331, 403, 605, 900
Alw21I	GWGCWC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	460, 902
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	4 cut(s)	824, 913, 933, 936
ApoI	RAATTY	6 cut(s)	321, 374, 446, 550, 579, 694
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	2 cut(s)	71, 791
AsuHPI	GGTGA	5 cut(s)	227, 288, 409, 536, 599
AvaII	GGWCC	2 cut(s)	71, 791
BaeGI	GKGCMC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	4 cut(s)	811, 900, 920, 923
BccI	CCATC	4 cut(s)	350, 407, 448, 664
BfaI	CTAG	3 cut(s)	96, 188, 620
BisI	GCNGC	5 cut(s)	751, 825, 914, 934, 937
BlsI	GCNGC	5 cut(s)	752, 826, 915, 935, 938
Bme18I	GGWCC	2 cut(s)	71, 791
BmgT120I	GGNCC	2 cut(s)	71, 791
BmiI	GGNNCC	1 cut(s)	721
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	811
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
Bpu10I	CCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	236, 289
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	185, 291
BseNI	ACTGG	2 cut(s)	236, 289
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	4 cut(s)	811, 900, 920, 923
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	249, 598
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	249, 598
BsmI	GAATGC	1 cut(s)	939
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	245, 333
Bsp143I	GATC	5 cut(s)	334, 452, 463, 478, 894
BspACI	CCGC	2 cut(s)	269, 750
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	2 cut(s)	186, 292
BspFNI	CGCG	1 cut(s)	750
BspHI	TCATGA	2 cut(s)	325, 475
BspLI	GGNNCC	1 cut(s)	721
BspPI	GGATC	2 cut(s)	460, 902
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	236, 289
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	5 cut(s)	334, 452, 463, 478, 894
Bst4CI	ACNGT	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	316, 931
BstDEI	CTNAG	2 cut(s)	194, 300
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	5 cut(s)	337, 455, 466, 481, 897
BstMBI	GATC	5 cut(s)	334, 452, 463, 478, 894
BstMWI	GCNNNNNNNGC	1 cut(s)	833
BstNSI	RCATGY	1 cut(s)	963
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	4 cut(s)	811, 900, 920, 923
BstV2I	GAAGAC	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	316, 931
CciI	TCATGA	2 cut(s)	325, 475
CfoI	GCGC	1 cut(s)	750
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	71, 791
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	3 cut(s)	326, 476, 960
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	2 cut(s)	194, 300
DpnI	GATC	5 cut(s)	336, 454, 465, 480, 896
DpnII	GATC	5 cut(s)	334, 452, 463, 478, 894
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	71, 791
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	579
EcoT22I	ATGCAT	2 cut(s)	6, 953
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	3 cut(s)	329, 479, 963
FalI	AAGNNNNNCTT	4 cut(s)	373, 405, 780, 812
FaqI	GGGAC	2 cut(s)	249, 598
FatI	CATG	3 cut(s)	325, 475, 959
FauI	CCCGC	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	947
Fnu4HI	GCNGC	5 cut(s)	751, 825, 914, 934, 937
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	5 cut(s)	751, 825, 914, 934, 937
FspBI	CTAG	3 cut(s)	96, 188, 620
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	5 cut(s)	751, 825, 914, 934, 937
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	750
Hin1II	CATG	3 cut(s)	329, 479, 963
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	2 cut(s)	766, 905
HindII	GTYRAC	2 cut(s)	766, 905
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	6 cut(s)	26, 114, 120, 165, 364, 628
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	5 cut(s)	227, 288, 409, 536, 599
Hpy166II	GTNNAC	5 cut(s)	437, 589, 766, 794, 905
Hpy188I	TCNGA	5 cut(s)	113, 119, 154, 445, 661
Hpy188III	TCNNGA	7 cut(s)	188, 326, 368, 467, 476, 486, 818
Hpy8I	GTNNAC	5 cut(s)	437, 589, 766, 794, 905
HpyAV	CCTTC	2 cut(s)	50, 782
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	4 cut(s)	4, 314, 939, 951
HpyF10VI	GCNNNNNNNGC	1 cut(s)	833
HpyF3I	CTNAG	2 cut(s)	194, 300
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	3 cut(s)	329, 479, 963
HspAI	GCGC	1 cut(s)	748
Kzo9I	GATC	5 cut(s)	334, 452, 463, 478, 894
Lsp1109I	GCAGC	4 cut(s)	811, 900, 920, 923
LweI	GCATC	1 cut(s)	811
MaeI	CTAG	3 cut(s)	96, 188, 620
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	1 cut(s)	699
MalI	GATC	5 cut(s)	336, 454, 465, 480, 896
MboI	GATC	5 cut(s)	334, 452, 463, 478, 894
MboII	GAAGA	6 cut(s)	167, 170, 333, 383, 393, 884
MfeI	CAATTG	2 cut(s)	134, 248
MhlI	GDGCHC	2 cut(s)	245, 333
MlyI	GAGTC	4 cut(s)	114, 123, 174, 637
MmeI	TCCRAC	4 cut(s)	142, 752, 765, 863
MnlI	CCTC	1 cut(s)	637
Mph1103I	ATGCAT	2 cut(s)	6, 953
MseI	TTAA	2 cut(s)	48, 281
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	900
MspI	CCGG	1 cut(s)	18
MunI	CAATTG	2 cut(s)	134, 248
Mva1269I	GAATGC	1 cut(s)	939
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	1 cut(s)	833
NdeI	CATATG	1 cut(s)	947
NdeII	GATC	5 cut(s)	334, 452, 463, 478, 894
NlaIII	CATG	3 cut(s)	329, 479, 963
NlaIV	GGNNCC	1 cut(s)	721
NmuCI	GTSAC	1 cut(s)	699
NsiI	ATGCAT	2 cut(s)	6, 953
NspI	RCATGY	1 cut(s)	963
PagI	TCATGA	2 cut(s)	325, 475
PciI	ACATGT	1 cut(s)	959
PctI	GAATGC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	26, 364
PkrI	GCNGC	5 cut(s)	752, 826, 915, 935, 938
PleI	GAGTC	4 cut(s)	114, 122, 173, 636
PpsI	GAGTC	4 cut(s)	114, 122, 173, 636
PscI	ACATGT	1 cut(s)	959
Psp124BI	GAGCTC	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	867
PspN4I	GGNNCC	1 cut(s)	721
PspPI	GGNCC	2 cut(s)	71, 791
PvuII	CAGCTG	1 cut(s)	900
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	48, 281
SatI	GCNGC	5 cut(s)	751, 825, 914, 934, 937
Sau3AI	GATC	5 cut(s)	334, 452, 463, 478, 894
Sau96I	GGNCC	2 cut(s)	71, 791
SchI	GAGTC	4 cut(s)	114, 123, 174, 637
SduI	GDGCHC	2 cut(s)	245, 333
SfaNI	GCATC	1 cut(s)	811
SinI	GGWCC	2 cut(s)	71, 791
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SsiI	CCGC	2 cut(s)	269, 750
SspMI	CTAG	3 cut(s)	96, 188, 620
SstI	GAGCTC	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	3 cut(s)	181, 333, 642
TauI	GCSGC	1 cut(s)	753
TfiI	GAWTC	2 cut(s)	26, 364
Tru1I	TTAA	2 cut(s)	48, 281
Tru9I	TTAA	2 cut(s)	48, 281
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	699
TseI	GCWGC	4 cut(s)	824, 913, 933, 936
Tsp45I	GTSAC	1 cut(s)	699
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	71, 791
XapI	RAATTY	6 cut(s)	321, 374, 446, 550, 579, 694
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	1 cut(s)	963
XspI	CTAG	3 cut(s)	96, 188, 620
Zsp2I	ATGCAT	2 cut(s)	6, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.