Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029151.1

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Reverse (-)

11948 .. 13559

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029151.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgcaagataaagtcctccgcagttatgcagaaatggaaaatgtcatggatagaacaaggcgcgaagcagagaatacgaaaaagttttccatacagaattttgcaaagagtttactagatgttgcagacaatttgggtagagctgcttcagttaccaaaaccggtttcgcaaaaattgatcagtctaaggattcggctggaactctgccacttctgaaaactcttcttgagggagttgaaatgactgagaaacaactttcggaggtgttcaaaaagtacggtgttgaaaaatatgatcctacaaatgaaccatttgacccacataggcataatgcaatgttccaaatatcagatccttccaagcctcctggcactgttgctcaagttctcaagcctggatacatgctgcatgatcgagttattaggccggctgacgttggtgtaactcaagaagcgcaaaacaatgcaactgaggaagatgctggtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

163

Amino Acids

18.19

Weight (kDa)

5.67

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	63
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	290, 347
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	278
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	239, 271, 287
AjnI	CCWGG	2 cut(s)	367, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
AlwI	GGATC	2 cut(s)	290, 347
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	143, 406
ApoI	RAATTY	1 cut(s)	97
AsiGI	ACCGGT	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	63, 457
BarI	GAAGNNNNNNTAC	2 cut(s)	130, 162
BbvI	GCAGC	2 cut(s)	130, 393
BciT130I	CCWGG	2 cut(s)	369, 396
BciVI	GTATCC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	392
BisI	GCNGC	2 cut(s)	144, 407
BlsI	GCNGC	2 cut(s)	145, 408
Bme1390I	CCNGG	2 cut(s)	369, 396
BmrFI	CCNGG	2 cut(s)	369, 396
BmsI	GCATC	1 cut(s)	469
BpuEI	CTTGAG	4 cut(s)	248, 366, 374, 432
BsaWI	WCCGGW	1 cut(s)	161
Bse118I	RCCGGY	2 cut(s)	161, 427
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	369, 396
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	237, 462
BseXI	GCAGC	2 cut(s)	130, 393
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	427
BshTI	ACCGGT	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	162, 428
BsnI	GGCC	1 cut(s)	427
Bsp143I	GATC	4 cut(s)	178, 295, 352, 412
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	238, 463
BspFNI	CGCG	1 cut(s)	63
BspPI	GGATC	2 cut(s)	290, 347
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	2 cut(s)	161, 427
BssAI	RCCGGY	2 cut(s)	161, 427
BssMI	GATC	4 cut(s)	178, 295, 352, 412
Bst2UI	CCWGG	2 cut(s)	369, 396
Bst4CI	ACNGT	2 cut(s)	281, 376
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	186, 246, 471
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	63, 457
BstKTI	GATC	4 cut(s)	181, 298, 355, 415
BstMBI	GATC	4 cut(s)	178, 295, 352, 412
BstNI	CCWGG	2 cut(s)	369, 396
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	367, 394
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	130, 393
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	429
CfoI	GCGC	2 cut(s)	63, 457
Cfr10I	RCCGGY	2 cut(s)	161, 427
Csp6I	GTAC	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	3 cut(s)	46, 403, 410
CviJI	RGCY	6 cut(s)	143, 197, 364, 394, 427, 431
CviKI_1	RGCY	6 cut(s)	143, 197, 364, 394, 427, 431
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	186, 246, 471
DpnI	GATC	4 cut(s)	180, 297, 354, 414
DpnII	GATC	4 cut(s)	178, 295, 352, 412
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	367, 394
FaeI	CATG	3 cut(s)	49, 406, 413
FaiI	YATR	8 cut(s)	27, 47, 92, 294, 324, 330, 404, 411
FatI	CATG	3 cut(s)	45, 402, 409
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	144, 407
Fsp4HI	GCNGC	2 cut(s)	144, 407
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	2 cut(s)	62, 456
GluI	GCNGC	2 cut(s)	144, 407
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	2 cut(s)	162, 428
HhaI	GCGC	2 cut(s)	63, 457
Hin1II	CATG	3 cut(s)	49, 406, 413
Hin6I	GCGC	2 cut(s)	61, 455
HinP1I	GCGC	2 cut(s)	61, 455
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	162, 428
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	3 cut(s)	216, 262, 352
Hpy188III	TCNNGA	2 cut(s)	227, 449
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	2 cut(s)	281, 376
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	7 cut(s)	4, 29, 104, 125, 335, 409, 467
HpyF3I	CTNAG	3 cut(s)	186, 246, 471
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	49, 406, 413
HspAI	GCGC	2 cut(s)	61, 455
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	178, 295, 352, 412
LpnPI	CCDG	8 cut(s)	175, 183, 354, 381, 381, 408, 441, 468
Lsp1109I	GCAGC	2 cut(s)	130, 393
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	151, 442
MalI	GATC	4 cut(s)	180, 297, 354, 414
MboI	GATC	4 cut(s)	178, 295, 352, 412
MboII	GAAGA	2 cut(s)	215, 488
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	4 cut(s)	97, 130, 174, 487
MnlI	CCTC	5 cut(s)	26, 223, 256, 375, 466
MroNI	GCCGGC	1 cut(s)	427
MspI	CCGG	2 cut(s)	162, 428
MspR9I	CCNGG	2 cut(s)	369, 396
MvaI	CCWGG	2 cut(s)	369, 396
MvnI	CGCG	1 cut(s)	63
NaeI	GCCGGC	1 cut(s)	429
NdeII	GATC	4 cut(s)	178, 295, 352, 412
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	3 cut(s)	49, 406, 413
NspI	RCATGY	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	191
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	145, 408
Psp6I	CCWGG	2 cut(s)	367, 394
PspGI	CCWGG	2 cut(s)	367, 394
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SatI	GCNGC	2 cut(s)	144, 407
Sau3AI	GATC	4 cut(s)	178, 295, 352, 412
ScrFI	CCNGG	2 cut(s)	369, 396
SetI	ASST	3 cut(s)	145, 267, 438
SfaNI	GCATC	1 cut(s)	469
SmlI	CTYRAG	4 cut(s)	227, 381, 389, 447
SmoI	CTYRAG	4 cut(s)	227, 381, 389, 447
Sse9I	AATT	4 cut(s)	97, 130, 174, 487
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	367, 394
TaaI	ACNGT	2 cut(s)	281, 376
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	1 cut(s)	415
TasI	AATT	4 cut(s)	97, 130, 174, 487
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	2 cut(s)	143, 406
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.