Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

19030304 .. 19031656

Gene Structure 1353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAGATAGTTCAAAAAAGAAAAAAGAAGCATCAGGATGACGAAAGAAACAATAGACATGAGGAGATTTCTTTTTCAACACTCAACTTTGATGGCAAGGCGATGTATGAGGAAATCATAAAGGCAACAGAGGATTTTGATTCCACATATTGCATTGGGCAGGGAGGACAGGGAAGCGTCTACAAGGTGAATTTGTCATCTGCCAACATAGTGGCCGTGAAGAAACTCCATCAGTTATGCAATGACGATGAAAAACTTCAGAAGGAATTCTTAAATGAAGTACGTGCACTGACTGAGATACGACACCGAAACATTGTGAAGCTTTATGGCTTCTGTTCACATAGGCAACACTCATTCTTAGTGTATGAGTATCTAGAAGGGGGTAGCTTGGCAACAGTGTTGAGCAATGACGATGAAGCTAAAGAACTTGGGTGGAATCAAAGGGTGAATATTGTCAAAGCCTGTGTTTCAGATTTTGGCACTGCTAAGTTCTTAAACCCAGACTCAGCTAATTGGACTGCCCTGGCAAGCACCTATGGATATATTGCACCAGAGCTTGCTTATACAATGGAAGTGAACCAGAAATGTGATGTTTATAGCTTCGGTGTGGTAACATTGGAAACAATTATGGGAAGGCATCCAGGAGATCTTTTATCATCTGGGTCATCTTCACCGTCATCTGCATTACCCGCCCATCAAATGTTATTTGTGGATGTTTTTGACAGACGCATTACCCCTCCTACAGATGAAGTTGCAGGTGAACTGCTCTCTCTTGTGAAGATAGCATTTTCATGCTTGAATACCAGTCCTCAGTCTCGACCAAAAATGGAACAAGTTTCTCAACAACTGGAAACTCAGAGGCTGTATTTGTCAAAGCCATTACAGATGATAAGATGTGGTGAATTGCTGACTCTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

306

Amino Acids

34.49

Weight (kDa)

6.26

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	51 - 139	9.6e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	52 - 148	1.6e-16	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	155 - 283	1e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	156 - 281	6.4e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	746
Acc36I	ACCTGC	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	1 cut(s)	690
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	190, 266
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	14, 78, 799
AjnI	CCWGG	2 cut(s)	522, 640
AluBI	AGCT	6 cut(s)	322, 387, 419, 509, 556, 600
AluI	AGCT	6 cut(s)	322, 387, 419, 509, 556, 600
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	819
Alw44I	GTGCAC	1 cut(s)	285
AlwNI	CAGNNNCTG	1 cut(s)	862
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	285
ApoI	RAATTY	2 cut(s)	190, 266
Asp700I	GAANNNNTTC	2 cut(s)	255, 266
AsuHPI	GGTGA	5 cut(s)	199, 457, 663, 770, 911
BaeGI	GKGCMC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	3 cut(s)	86, 237, 702
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	524, 642
BcoDI	GTCTC	1 cut(s)	819
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	646
Bme1390I	CCNGG	2 cut(s)	524, 642
BmrFI	CCNGG	2 cut(s)	524, 642
BmsI	GCATC	2 cut(s)	40, 646
BsaAI	YACGTR	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	522
Bse1I	ACTGG	2 cut(s)	804, 852
Bse3DI	GCAATG	2 cut(s)	247, 412
BseBI	CCWGG	2 cut(s)	524, 642
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	3 cut(s)	43, 637, 718
BseMI	GCAATG	2 cut(s)	247, 412
BseMII	CTCAG	4 cut(s)	285, 519, 824, 869
BseNI	ACTGG	2 cut(s)	804, 852
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	819
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	646
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	4 cut(s)	286, 518, 823, 868
BspMI	ACCTGC	1 cut(s)	746
BsrDI	GCAATG	2 cut(s)	247, 412
BsrI	ACTGG	2 cut(s)	804, 852
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	646
Bst2UI	CCWGG	2 cut(s)	524, 642
Bst4CI	ACNGT	2 cut(s)	397, 675
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	529, 558
BstDEI	CTNAG	6 cut(s)	294, 358, 486, 505, 810, 855
BstF5I	GGATG	3 cut(s)	43, 637, 718
BstKTI	GATC	1 cut(s)	649
BstMAI	GTCTC	1 cut(s)	819
BstMBI	GATC	1 cut(s)	646
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	2 cut(s)	524, 642
BstSCI	CCNGG	2 cut(s)	522, 640
BstSFI	CTRYAG	1 cut(s)	741
BstSLI	GKGCMC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	646
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	646
BsuRI	GGCC	1 cut(s)	215
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	43, 637, 718
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	287, 402, 480
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	2 cut(s)	529, 558
CaiI	CAGNNNCTG	1 cut(s)	862
CseI	GACGC	2 cut(s)	166, 735
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	2 cut(s)	59, 792
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	6 cut(s)	294, 358, 486, 505, 810, 855
DpnI	GATC	1 cut(s)	648
DpnII	GATC	1 cut(s)	646
EaeI	YGGCCR	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	522, 640
FaeI	CATG	2 cut(s)	62, 795
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	2 cut(s)	58, 791
FauI	CCCGC	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	180
FokI	GGATG	3 cut(s)	50, 624, 725
FspBI	CTAG	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	215
HgaI	GACGC	2 cut(s)	166, 735
Hin1II	CATG	2 cut(s)	62, 795
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	4 cut(s)	140, 436, 503, 910
HphI	GGTGA	5 cut(s)	199, 457, 663, 770, 911
Hpy166II	GTNNAC	5 cut(s)	181, 287, 338, 577, 761
Hpy188I	TCNGA	3 cut(s)	261, 472, 858
Hpy188III	TCNNGA	3 cut(s)	35, 374, 816
Hpy8I	GTNNAC	5 cut(s)	181, 287, 338, 577, 761
HpyAV	CCTTC	3 cut(s)	256, 371, 627
HpyCH4III	ACNGT	2 cut(s)	397, 675
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	6 cut(s)	153, 240, 287, 548, 683, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	6 cut(s)	294, 358, 486, 505, 810, 855
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	62, 795
Kzo9I	GATC	1 cut(s)	646
LweI	GCATC	2 cut(s)	40, 646
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	1 cut(s)	648
MboI	GATC	1 cut(s)	646
MboII	GAAGA	4 cut(s)	16, 232, 660, 790
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	5 cut(s)	190, 266, 511, 624, 902
MlyI	GAGTC	2 cut(s)	497, 904
MnlI	CCTC	7 cut(s)	55, 103, 124, 158, 747, 819, 852
MroXI	GAANNNNTTC	2 cut(s)	255, 266
MseI	TTAA	2 cut(s)	272, 494
MslI	CAYNNNNRTG	2 cut(s)	36, 790
MspR9I	CCNGG	2 cut(s)	524, 642
MvaI	CCWGG	2 cut(s)	524, 642
MwoI	GCNNNNNNNGC	1 cut(s)	689
NdeII	GATC	1 cut(s)	646
NlaIII	CATG	2 cut(s)	62, 795
PaqCI	CACCTGC	1 cut(s)	746
PdmI	GAANNNNTTC	2 cut(s)	255, 266
PfeI	GAWTC	2 cut(s)	140, 436
PfoI	TCCNGGA	1 cut(s)	640
PleI	GAGTC	2 cut(s)	497, 904
PpsI	GAGTC	2 cut(s)	497, 904
Ppu21I	YACGTR	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	522, 640
PspGI	CCWGG	2 cut(s)	522, 640
PstNI	CAGNNNCTG	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	36, 790
SaqAI	TTAA	2 cut(s)	272, 494
Sau3AI	GATC	1 cut(s)	646
SchI	GAGTC	2 cut(s)	497, 904
ScrFI	CCNGG	2 cut(s)	524, 642
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	40, 646
SfcI	CTRYAG	1 cut(s)	741
SmiMI	CAYNNNNRTG	2 cut(s)	36, 790
Sse9I	AATT	5 cut(s)	190, 266, 511, 624, 902
SsiI	CCGC	1 cut(s)	690
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	522, 640
TaaI	ACNGT	2 cut(s)	397, 675
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	817
TasI	AATT	5 cut(s)	190, 266, 511, 624, 902
TfiI	GAWTC	2 cut(s)	140, 436
Tru1I	TTAA	2 cut(s)	272, 494
Tru9I	TTAA	2 cut(s)	272, 494
TscAI	CASTG	3 cut(s)	294, 402, 487
TspDTI	ATGAA	6 cut(s)	17, 264, 291, 429, 762, 780
TspRI	CASTG	3 cut(s)	294, 402, 487
VneI	GTGCAC	1 cut(s)	285
XapI	RAATTY	2 cut(s)	190, 266
XbaI	TCTAGA	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	2 cut(s)	255, 266
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.