Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

36012594 .. 36016570

Gene Structure 3977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG283200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTCGTGTCTAGGGTTTTAGCTCGCGCTTCGAGGGCCATCCCCAGGAGCACGGTGTCCTTCGCCGCTCTACCCAATCACCGATTCCCAATCATTTCCAATCAGCCGCAGCCTCTGATTCAGGACTTGCCCAATAAGGTGTCACTGTTGCATCATTCAGCCTCCAGTTCTTCTATATCTATATCTCAACTATTCGGATTCTCTTCATCTGCATCTCCGGAGCCTTCTGAAAGGGTTGGAAATGGAGGTGCTGAGAAGAGTGATGCTAAAGTTTCTGATAGTGGGGATACAAAAGTGGCTGATCAAACCAAAGAATCAGATTCAGATGGTGACTTGTCTACTGAGGATCTGGTGAAACTTCTCACAGAGAAGGAAGAACTTCTGAAACAAAAGCATAAAGAGATTGAGAAGATGCAAGAGAAAGTCCTCCGCAGTTATGCAGAAATGGAAAATGTCATGGATAGAACAAGGCGCGAAGCAGAGAATACGAAAAAGTTTTCCATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCAGACAATTTGGGTAGAGCTGCTTCAGTTACCAAAACCGGTTTCGCAAAAATTGATCAGTCTAAGGATTCGACTGGAACACTGCCACTTCTGAAAACTCTTCTTGAGGGAGTTGAAATGACTGAGAAACAACTTTCAGAGGTGTTCAAAAAGTACGGTGTTGAAAAATATGATCCTACAAATGAACCATTTGACCCACATAGGCATAATGCAATGTTCCAAATATCAGATCCTTCCAAGCCTCCTGGCACTGTTGCTCAAGTTCTCAAGGTATGCTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

272

Amino Acids

30.02

Weight (kDa)

6.62

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	120 - 268	2.1e-38	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	338
AccII	CGCG	2 cut(s)	27, 474
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	3 cut(s)	66, 107, 430
AclWI	GGATC	3 cut(s)	354, 701, 758
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgeI	ACCGGT	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	650, 682, 698
AjnI	CCWGG	2 cut(s)	44, 778
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 560, 592
AluBI	AGCT	2 cut(s)	23, 554
AluI	AGCT	2 cut(s)	23, 554
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	3 cut(s)	354, 701, 758
AlwNI	CAGNNNCTG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	109, 554
ApoI	RAATTY	1 cut(s)	508
AsiGI	ACCGGT	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	2 cut(s)	29, 474
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	71, 341, 364
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BarI	GAAGNNNNNNTAC	2 cut(s)	541, 573
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	121, 541
BccI	CCATC	2 cut(s)	47, 320
BciT130I	CCWGG	2 cut(s)	46, 780
BciVI	GTATCC	1 cut(s)	280
BclI	TGATCA	2 cut(s)	301, 589
BfaI	CTAG	2 cut(s)	12, 527
BfuI	GTATCC	1 cut(s)	280
BisI	GCNGC	4 cut(s)	66, 107, 110, 555
BlsI	GCNGC	4 cut(s)	67, 108, 111, 556
Bme1390I	CCNGG	2 cut(s)	46, 780
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	46, 780
BmsI	GCATC	4 cut(s)	160, 221, 253, 402
BpmI	CTGGAG	1 cut(s)	148
BpuEI	CTTGAG	3 cut(s)	659, 777, 785
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	217, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	572
Bse1I	ACTGG	2 cut(s)	165, 613
Bse3DI	GCAATG	1 cut(s)	753
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	46, 780
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	3 cut(s)	243, 333, 648
BseNI	ACTGG	2 cut(s)	165, 613
BseXI	GCAGC	2 cut(s)	121, 541
Bsh1236I	CGCG	2 cut(s)	27, 474
BshFI	GGCC	1 cut(s)	38
BshTI	ACCGGT	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	218, 573
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	5 cut(s)	301, 346, 589, 706, 763
BspACI	CCGC	3 cut(s)	66, 107, 430
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	3 cut(s)	244, 334, 649
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	27, 474
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	3 cut(s)	354, 701, 758
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	165, 613
BssAI	RCCGGY	1 cut(s)	572
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	5 cut(s)	301, 346, 589, 706, 763
Bst2UI	CCWGG	2 cut(s)	46, 780
Bst4CI	ACNGT	4 cut(s)	55, 147, 692, 787
Bst6I	CTCTTC	3 cut(s)	208, 251, 639
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	4 cut(s)	252, 342, 597, 657
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	27, 474
BstHHI	GCGC	2 cut(s)	29, 474
BstKTI	GATC	5 cut(s)	304, 349, 592, 709, 766
BstMBI	GATC	5 cut(s)	301, 346, 589, 706, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	46, 780
BstSCI	CCNGG	2 cut(s)	44, 778
BstUI	CGCG	2 cut(s)	27, 474
BstV1I	GCAGC	2 cut(s)	121, 541
BstX2I	RGATCY	2 cut(s)	346, 763
BstYI	RGATCY	2 cut(s)	346, 763
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	614
BtsIMutI	CAGTG	3 cut(s)	143, 614, 783
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	29, 474
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	688
CspAI	ACCGGT	1 cut(s)	572
CviAII	CATG	1 cut(s)	457
CviJI	RGCY	9 cut(s)	23, 38, 106, 112, 161, 223, 299, 554, 775
CviKI_1	RGCY	9 cut(s)	23, 38, 106, 112, 161, 223, 299, 554, 775
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	4 cut(s)	252, 342, 597, 657
DpnI	GATC	5 cut(s)	303, 348, 591, 708, 765
DpnII	GATC	5 cut(s)	301, 346, 589, 706, 763
Eam1104I	CTCTTC	3 cut(s)	208, 251, 639
EarI	CTCTTC	3 cut(s)	208, 251, 639
Eco57I	CTGAAG	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	44, 778
FaeI	CATG	1 cut(s)	460
FalI	AAGNNNNNCTT	1 cut(s)	794
FatI	CATG	1 cut(s)	456
FbaI	TGATCA	2 cut(s)	301, 589
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	4 cut(s)	66, 107, 110, 555
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	66, 107, 110, 555
FspBI	CTAG	2 cut(s)	12, 527
GlaI	GCGC	2 cut(s)	28, 473
GluI	GCNGC	4 cut(s)	66, 107, 110, 555
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	2 cut(s)	218, 573
HhaI	GCGC	2 cut(s)	29, 474
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	2 cut(s)	27, 472
HinP1I	GCGC	2 cut(s)	27, 472
HinfI	GANTC	6 cut(s)	84, 118, 198, 314, 320, 602
HpaII	CCGG	2 cut(s)	218, 573
HphI	GGTGA	3 cut(s)	71, 341, 364
Hpy166II	GTNNAC	2 cut(s)	339, 524
Hpy188III	TCNNGA	3 cut(s)	122, 218, 638
Hpy8I	GTNNAC	2 cut(s)	339, 524
HpyAV	CCTTC	4 cut(s)	70, 234, 364, 777
HpyCH4III	ACNGT	4 cut(s)	55, 147, 692, 787
HpyCH4V	TGCA	7 cut(s)	151, 212, 415, 440, 515, 536, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	252, 342, 597, 657
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	2 cut(s)	27, 472
Kpn2I	TCCGGA	1 cut(s)	217
Ksp22I	TGATCA	2 cut(s)	301, 589
Kzo9I	GATC	5 cut(s)	301, 346, 589, 706, 763
LmnI	GCTCC	2 cut(s)	48, 220
Lsp1109I	GCAGC	2 cut(s)	121, 541
LweI	GCATC	4 cut(s)	160, 221, 253, 402
MaeI	CTAG	2 cut(s)	12, 527
MaeIII	GTNAC	3 cut(s)	141, 329, 562
MalI	GATC	5 cut(s)	303, 348, 591, 708, 765
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	5 cut(s)	301, 346, 589, 706, 763
MboII	GAAGA	6 cut(s)	162, 195, 268, 386, 421, 626
MflI	RGATCY	2 cut(s)	346, 763
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	3 cut(s)	508, 541, 585
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	9 cut(s)	27, 123, 172, 239, 337, 437, 634, 667, 786
MroI	TCCGGA	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	812
MspI	CCGG	2 cut(s)	218, 573
MspR9I	CCNGG	2 cut(s)	46, 780
MvaI	CCWGG	2 cut(s)	46, 780
MvnI	CGCG	2 cut(s)	27, 474
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	5 cut(s)	301, 346, 589, 706, 763
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	141, 329
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	6 cut(s)	84, 118, 198, 314, 320, 602
PinAI	ACCGGT	1 cut(s)	572
PkrI	GCNGC	4 cut(s)	67, 108, 111, 556
Psp6I	CCWGG	2 cut(s)	44, 778
PspGI	CCWGG	2 cut(s)	44, 778
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	346, 763
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
SaqAI	TTAA	1 cut(s)	812
SatI	GCNGC	4 cut(s)	66, 107, 110, 555
Sau3AI	GATC	5 cut(s)	301, 346, 589, 706, 763
Sau96I	GGNCC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	46, 780
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	6 cut(s)	25, 141, 250, 556, 678, 807
SfaNI	GCATC	4 cut(s)	160, 221, 253, 402
SmlI	CTYRAG	3 cut(s)	638, 792, 800
SmoI	CTYRAG	3 cut(s)	638, 792, 800
Sse9I	AATT	3 cut(s)	508, 541, 585
SsiI	CCGC	3 cut(s)	66, 107, 430
SspMI	CTAG	2 cut(s)	12, 527
StyD4I	CCNGG	2 cut(s)	44, 778
TaaI	ACNGT	4 cut(s)	55, 147, 692, 787
TaqI	TCGA	2 cut(s)	32, 605
TasI	AATT	3 cut(s)	508, 541, 585
TauI	GCSGC	2 cut(s)	68, 109
TfiI	GAWTC	6 cut(s)	84, 118, 198, 314, 320, 602
Tru1I	TTAA	1 cut(s)	812
Tru9I	TTAA	1 cut(s)	812
TscAI	CASTG	3 cut(s)	150, 621, 790
TseFI	GTSAC	2 cut(s)	141, 329
TseI	GCWGC	2 cut(s)	109, 554
Tsp45I	GTSAC	2 cut(s)	141, 329
TspDTI	ATGAA	2 cut(s)	195, 732
TspRI	CASTG	3 cut(s)	150, 621, 790
XapI	RAATTY	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	2 cut(s)	12, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.