Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

37708503 .. 37711323

Gene Structure 2821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG278800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTCGTGTCTAGGGTTTTAGCTCGCGCTTCGAGGGCCATCCCCAGGAGCACGGTGTCCTTCGCCGCTCAACCCAATCACCGATTCCCAATCATTTCCAATCAGCCGCAGCCTCTGATTCAGGACTTGCCCAATAAGGTGTCGCTGTTGCATCATTCAGCCTCCAGTTCTTCTATATCTATATCTCAACTATTCGGATTCTCTTCATCTGCATCTCCGGAGCCTTCTGAAAGGGTTGGAAATGGAGGTGCCGAGAAGAGTGATGCTAAAGTTTCTGATAGTGGAGATACAAAAGTGGCTGATCAAACCAAAGAATCAGATTCAGATTCAGATGGTGACTTGTCTACTGAGGATCTGGTGAAACTTCTCACAGAGAAGGAAGAACTTCTGAAACAAAAGCATAAAGAGATTGAGAAGATGCAAGATAAAGTCCTCCGCAGTTATGCAGAAATGGAAAATGTCATGGATAGAACAAGGCGCGAAGCAGAGAATACGAAAAAGTTTTCCATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCAGACAATTTGGGTAGAGCTGCTTCAGTTACCAAAACCGGTTTCGCAAAAATTGATCAGTCTAAGGATTCGGCTGGAACTCTGCCACTTCTGAAAACTCTTCTTGAGGGAGTTGAAATGACTGAGAAACAACTTTCGGAGGTGTTCAAAAAGTACGGTGTTGAAAAATATGATCCTACAAATGAACCATTTGACCCACATAGGCATAATGCAATGTTCCAATTATCAGATCCTTCCAAGCCTCCTGGCACTGTTGCTCAAGTTCTCAAGCCTGGATACATGCTGCATGATCGAGTTATTAGGCCGGCTGACGTTGGTGTAACTCAAGAAGCAGAAAACAATGCAACTGAGGAAGATGCTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

302

Amino Acids

33.2

Weight (kDa)

5.61

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	123 - 288	1.9e-50	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	344
AccII	CGCG	2 cut(s)	27, 480
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	3 cut(s)	66, 107, 436
AclWI	GGATC	3 cut(s)	360, 707, 764
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgeI	ACCGGT	1 cut(s)	578
AgsI	TTSAA	3 cut(s)	656, 688, 704
AjnI	CCWGG	3 cut(s)	44, 784, 811
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 566, 598
AluBI	AGCT	2 cut(s)	23, 560
AluI	AGCT	2 cut(s)	23, 560
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	3 cut(s)	360, 707, 764
AlwNI	CAGNNNCTG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	2 cut(s)	36, 842
ApeKI	GCWGC	3 cut(s)	109, 560, 823
ApoI	RAATTY	1 cut(s)	514
AsiGI	ACCGGT	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	29, 480
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	71, 347, 370
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BanI	GGYRCC	1 cut(s)	248
BarI	GAAGNNNNNNTAC	2 cut(s)	547, 579
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	121, 547, 810
BccI	CCATC	2 cut(s)	47, 326
BciT130I	CCWGG	3 cut(s)	46, 786, 813
BciVI	GTATCC	1 cut(s)	809
BclI	TGATCA	2 cut(s)	301, 595
BfaI	CTAG	2 cut(s)	12, 533
BfuI	GTATCC	1 cut(s)	809
BisI	GCNGC	5 cut(s)	66, 107, 110, 561, 824
BlsI	GCNGC	5 cut(s)	67, 108, 111, 562, 825
Bme1390I	CCNGG	3 cut(s)	46, 786, 813
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	222, 250
BmrFI	CCNGG	3 cut(s)	46, 786, 813
BmsI	GCATC	5 cut(s)	160, 221, 253, 408, 886
BpmI	CTGGAG	1 cut(s)	148
BpuEI	CTTGAG	4 cut(s)	665, 783, 791, 849
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	217, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	2 cut(s)	578, 844
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	759
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	3 cut(s)	46, 786, 813
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	3 cut(s)	339, 654, 879
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	121, 547, 810
Bsh1236I	CGCG	2 cut(s)	27, 480
BshFI	GGCC	2 cut(s)	38, 844
BshNI	GGYRCC	1 cut(s)	248
BshTI	ACCGGT	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	218, 579, 845
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	2 cut(s)	38, 844
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	6 cut(s)	301, 352, 595, 712, 769, 829
BspACI	CCGC	3 cut(s)	66, 107, 436
BspANI	GGCC	2 cut(s)	38, 844
BspCNI	CTCAG	3 cut(s)	340, 655, 880
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	27, 480
BspLI	GGNNCC	2 cut(s)	222, 250
BspPI	GGATC	3 cut(s)	360, 707, 764
BspT107I	GGYRCC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	759
BsrFI	RCCGGY	2 cut(s)	578, 844
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	2 cut(s)	578, 844
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	6 cut(s)	301, 352, 595, 712, 769, 829
Bst2UI	CCWGG	3 cut(s)	46, 786, 813
Bst4CI	ACNGT	3 cut(s)	55, 698, 793
Bst6I	CTCTTC	3 cut(s)	208, 251, 645
BstC8I	GCNNGC	3 cut(s)	25, 846, 901
BstDEI	CTNAG	4 cut(s)	348, 603, 663, 888
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	27, 480
BstHHI	GCGC	2 cut(s)	29, 480
BstKTI	GATC	6 cut(s)	304, 355, 598, 715, 772, 832
BstMBI	GATC	6 cut(s)	301, 352, 595, 712, 769, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	3 cut(s)	46, 786, 813
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	3 cut(s)	44, 784, 811
BstUI	CGCG	2 cut(s)	27, 480
BstV1I	GCAGC	3 cut(s)	121, 547, 810
BstX2I	RGATCY	2 cut(s)	352, 769
BstYI	RGATCY	2 cut(s)	352, 769
BsuI	GTATCC	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	38, 844
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	789
Cac8I	GCNNGC	3 cut(s)	25, 846, 901
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	29, 480
Cfr10I	RCCGGY	2 cut(s)	578, 844
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	694
CspAI	ACCGGT	1 cut(s)	578
CviAII	CATG	3 cut(s)	463, 820, 827
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	4 cut(s)	348, 603, 663, 888
DpnI	GATC	6 cut(s)	303, 354, 597, 714, 771, 831
DpnII	GATC	6 cut(s)	301, 352, 595, 712, 769, 829
Eam1104I	CTCTTC	3 cut(s)	208, 251, 645
EarI	CTCTTC	3 cut(s)	208, 251, 645
Eco57I	CTGAAG	1 cut(s)	549
EcoRII	CCWGG	3 cut(s)	44, 784, 811
FaeI	CATG	3 cut(s)	466, 823, 830
FatI	CATG	3 cut(s)	462, 819, 826
FbaI	TGATCA	2 cut(s)	301, 595
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	5 cut(s)	66, 107, 110, 561, 824
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	66, 107, 110, 561, 824
FspBI	CTAG	2 cut(s)	12, 533
GlaI	GCGC	2 cut(s)	28, 479
GluI	GCNGC	5 cut(s)	66, 107, 110, 561, 824
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	2 cut(s)	38, 844
HapII	CCGG	3 cut(s)	218, 579, 845
HhaI	GCGC	2 cut(s)	29, 480
Hin1II	CATG	3 cut(s)	466, 823, 830
Hin6I	GCGC	2 cut(s)	27, 478
HinP1I	GCGC	2 cut(s)	27, 478
HinfI	GANTC	7 cut(s)	84, 118, 198, 314, 320, 326, 608
HpaII	CCGG	3 cut(s)	218, 579, 845
HphI	GGTGA	3 cut(s)	71, 347, 370
Hpy166II	GTNNAC	2 cut(s)	345, 530
Hpy188III	TCNNGA	4 cut(s)	122, 218, 644, 866
Hpy8I	GTNNAC	2 cut(s)	345, 530
HpyAV	CCTTC	4 cut(s)	70, 234, 370, 783
HpyCH4III	ACNGT	3 cut(s)	55, 698, 793
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	9 cut(s)	151, 212, 421, 446, 521, 542, 752, 826, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	348, 603, 663, 888
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	3 cut(s)	466, 823, 830
HspAI	GCGC	2 cut(s)	27, 478
Kpn2I	TCCGGA	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	844
KroNI	GCCGGC	1 cut(s)	846
Ksp22I	TGATCA	2 cut(s)	301, 595
Kzo9I	GATC	6 cut(s)	301, 352, 595, 712, 769, 829
LmnI	GCTCC	2 cut(s)	48, 220
Lsp1109I	GCAGC	3 cut(s)	121, 547, 810
LweI	GCATC	5 cut(s)	160, 221, 253, 408, 886
MaeI	CTAG	2 cut(s)	12, 533
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	3 cut(s)	335, 568, 859
MalI	GATC	6 cut(s)	303, 354, 597, 714, 771, 831
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	6 cut(s)	301, 352, 595, 712, 769, 829
MboII	GAAGA	7 cut(s)	162, 195, 268, 392, 427, 632, 905
MfeI	CAATTG	1 cut(s)	904
MflI	RGATCY	2 cut(s)	352, 769
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	5 cut(s)	514, 547, 591, 761, 904
MmeI	TCCRAC	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	384
MspI	CCGG	3 cut(s)	218, 579, 845
MspR9I	CCNGG	3 cut(s)	46, 786, 813
MunI	CAATTG	1 cut(s)	904
MvaI	CCWGG	3 cut(s)	46, 786, 813
MvnI	CGCG	2 cut(s)	27, 480
MwoI	GCNNNNNNNGC	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	846
NdeII	GATC	6 cut(s)	301, 352, 595, 712, 769, 829
NgoMIV	GCCGGC	1 cut(s)	844
NlaIII	CATG	3 cut(s)	466, 823, 830
NlaIV	GGNNCC	2 cut(s)	222, 250
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	823
PdiI	GCCGGC	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	7 cut(s)	84, 118, 198, 314, 320, 326, 608
PinAI	ACCGGT	1 cut(s)	578
PkrI	GCNGC	5 cut(s)	67, 108, 111, 562, 825
Psp6I	CCWGG	3 cut(s)	44, 784, 811
PspGI	CCWGG	3 cut(s)	44, 784, 811
PspN4I	GGNNCC	2 cut(s)	222, 250
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	352, 769
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SatI	GCNGC	5 cut(s)	66, 107, 110, 561, 824
Sau3AI	GATC	6 cut(s)	301, 352, 595, 712, 769, 829
Sau96I	GGNCC	1 cut(s)	36
ScrFI	CCNGG	3 cut(s)	46, 786, 813
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	6 cut(s)	25, 141, 250, 562, 684, 855
SfaNI	GCATC	5 cut(s)	160, 221, 253, 408, 886
SmlI	CTYRAG	4 cut(s)	644, 798, 806, 864
SmoI	CTYRAG	4 cut(s)	644, 798, 806, 864
Sse9I	AATT	5 cut(s)	514, 547, 591, 761, 904
SsiI	CCGC	3 cut(s)	66, 107, 436
SspMI	CTAG	2 cut(s)	12, 533
StyD4I	CCNGG	3 cut(s)	44, 784, 811
TaaI	ACNGT	3 cut(s)	55, 698, 793
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	2 cut(s)	32, 832
TasI	AATT	5 cut(s)	514, 547, 591, 761, 904
TauI	GCSGC	2 cut(s)	68, 109
TfiI	GAWTC	7 cut(s)	84, 118, 198, 314, 320, 326, 608
TscAI	CASTG	1 cut(s)	796
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	3 cut(s)	109, 560, 823
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	195, 738
TspRI	CASTG	1 cut(s)	796
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	2 cut(s)	12, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.