Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007286

Physical Location & Seq

Genomic Coordinates Forward (+)

16588471 .. 16591636

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23521.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTCGTCTCTAGGGTTTTTGCTCGCGTTTCGAGGGCCGTCCCCAGGAACGCAGTGACCTTCGCCGCCCAGCCGAATCACCGATTCCCAATCCTTTCCAATCAGTCGCAGCCTCTGATTCAGGACATGCCCAATAAGTTAATTCTGAGCCAGGTGTCTTTGTTGCATCATTCAACCCCAACTTCTTCTATATCTCAACTATTTGGATTCTCTTCATCTGCATCTCCGGAGCCTTCTGAAAGGGTTGGAAATGGAGGTTCTGAGAAGAGTGATGCTAAAGTGTCTGAAGGTGGGGATACACAAGCGGCTGATCAAACCAAAGAATCAGATTCCGACGAAGACTTGTCTACCGAGGACCTGGTGAAACTTCTTACGGAAAAGGAAGAACTTCTGAAGCAAAAGCATAAAGAGGTGGAGAAAATGCAAGATAAAGTCCTACGCACTTATGCAGAAATGGAAAATGTCATGGACAGAACAAGGCGTGAAGCAGAGAATACGAAGAAGTTTTCAATACAGAACTTTGCAAAGAGTTTACTAGATGTTGCAGACAATTTAGGTAGAGCTGCTTCTGTTACCAAAACCGGTTTCACAAAACTTGATCAGTCTGAGAATTCTGCTGGTGCTCTACCACTTTTGAAAACTCTTCTTGAAGGAGTCGAAATGACTGAGAAACAACTTGCTGAGGTGTTTAAAAAGTACGGTATAGAAAAATATGATCCTACAAATGAGCCATTTGACCCACATAGGCATGATGCTGTATTCCAAGTATCAGATCCTTCGAAGCCTCCTGGCACTGTTGCTCAAGTTCTCAAGCCTGGATATATACTTCATGATCGAGTTATTAGGCCGGCTGAGGTTGGTGTAACTCAAGCGGAAAACAATGCAGCTGGGGAAGATGGTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000774 GO:0001405 GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010286 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0019866 GO:0030150 GO:0030234 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050790 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060589 GO:0060590 GO:0065002 GO:0065007 GO:0065009 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098772 GO:0098796 GO:0098798 GO:0098800 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

303

Amino Acids

33.22

Weight (kDa)

5.5

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	152 - 318	1.5e-50	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26780 AT5G55200
fragaria_vesca	FvH4_3g23521 FvH4_3g23521 FvH4_3g23521 FvH4_3g23521
malus_domestica	MD03G1193500.v1.1 MD11G1209700.v1.1
prunus_persica	Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1 Prupe.4G223200_v2.0.a1
pyrus_communis	pycom03g14590 pycom11g18520
rosa_chinensis	RchiOBHm_Chr5g0041521
rosa_laevigata	RLG00000034075
rosa_multiflora	Rmu_sc0029151.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039010
rosa_rugosa	Rorug05G0193100 Rorug05G0193200 Rorug05G0193300
rosa_samantha	Rh5AG278800 Rh5BG283200 Rh5CG316100 Rh5DG293000
rosa_wichuraiana	Rw5G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	3 cut(s)	66, 305, 872
AclWI	GGATC	2 cut(s)	710, 767
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	306, 413
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgeI	ACCGGT	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	174, 510, 637, 650
AjnI	CCWGG	5 cut(s)	44, 150, 357, 787, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AluBI	AGCT	2 cut(s)	563, 887
AluI	AGCT	2 cut(s)	563, 887
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	710, 767
AlwNI	CAGNNNCTG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	2 cut(s)	36, 845
ApeKI	GCWGC	3 cut(s)	109, 563, 884
ApoI	RAATTY	1 cut(s)	610
AsiGI	ACCGGT	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	36, 355
AsuHPI	GGTGA	2 cut(s)	71, 373
AsuII	TTCGAA	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	355
BarI	GAAGNNNNNNTAC	2 cut(s)	550, 582
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	625
BbvCI	CCTCAGC	2 cut(s)	681, 852
BbvI	GCAGC	3 cut(s)	121, 550, 896
BccI	CCATC	1 cut(s)	890
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	5 cut(s)	46, 152, 359, 789, 816
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	2 cut(s)	310, 598
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	2 cut(s)	12, 536
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	5 cut(s)	66, 110, 306, 564, 885
BlsI	GCNGC	5 cut(s)	67, 111, 307, 565, 886
Bme1390I	CCNGG	5 cut(s)	46, 152, 359, 789, 816
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	36, 355
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	5 cut(s)	46, 152, 359, 789, 816
BmsI	GCATC	4 cut(s)	175, 230, 262, 742
BpiI	GAAGAC	1 cut(s)	345
Bpu10I	CCTNAGC	2 cut(s)	681, 852
Bpu14I	TTCGAA	1 cut(s)	779
BpuEI	CTTGAG	3 cut(s)	786, 794, 852
BsaJI	CCNNGG	2 cut(s)	44, 351
BsaWI	WCCGGW	2 cut(s)	226, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	2 cut(s)	581, 847
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	5 cut(s)	46, 152, 359, 789, 816
BseDI	CCNNGG	2 cut(s)	44, 351
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	6 cut(s)	137, 252, 597, 657, 672, 843
BseXI	GCAGC	3 cut(s)	121, 550, 896
BseYI	CCCAGC	2 cut(s)	69, 887
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	38, 847
BshTI	ACCGGT	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	227, 582, 848
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	38, 847
Bsp119I	TTCGAA	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	310, 598, 715, 772, 832
BspACI	CCGC	3 cut(s)	66, 305, 872
BspANI	GGCC	2 cut(s)	38, 847
BspCNI	CTCAG	6 cut(s)	138, 253, 598, 658, 673, 844
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	710, 767
BspT104I	TTCGAA	1 cut(s)	779
BsrFI	RCCGGY	2 cut(s)	581, 847
BssAI	RCCGGY	2 cut(s)	581, 847
BssECI	CCNNGG	2 cut(s)	44, 351
BssMI	GATC	5 cut(s)	310, 598, 715, 772, 832
Bst2UI	CCWGG	5 cut(s)	46, 152, 359, 789, 816
Bst4CI	ACNGT	2 cut(s)	701, 796
Bst6I	CTCTTC	3 cut(s)	217, 260, 648
BstBI	TTCGAA	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	25, 849
BstDEI	CTNAG	6 cut(s)	146, 261, 606, 666, 681, 852
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	5 cut(s)	313, 601, 718, 775, 835
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	5 cut(s)	310, 598, 715, 772, 832
BstNI	CCWGG	5 cut(s)	46, 152, 359, 789, 816
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	5 cut(s)	44, 150, 357, 787, 814
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	121, 550, 896
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	38, 847
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 792
Cac8I	GCNNGC	2 cut(s)	25, 849
CaiI	CAGNNNCTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	829
Cfr10I	RCCGGY	2 cut(s)	581, 847
Cfr13I	GGNCC	2 cut(s)	36, 355
CsiI	ACCWGGT	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	697
CspAI	ACCGGT	1 cut(s)	581
CviAII	CATG	4 cut(s)	127, 466, 749, 830
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	6 cut(s)	146, 261, 606, 666, 681, 852
DpnI	GATC	5 cut(s)	312, 600, 717, 774, 834
DpnII	GATC	5 cut(s)	310, 598, 715, 772, 832
DraI	TTTAAA	1 cut(s)	691
Eam1104I	CTCTTC	3 cut(s)	217, 260, 648
EarI	CTCTTC	3 cut(s)	217, 260, 648
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	306, 413
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	5 cut(s)	44, 150, 357, 787, 814
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	4 cut(s)	130, 469, 752, 833
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	4 cut(s)	126, 465, 748, 829
FbaI	TGATCA	2 cut(s)	310, 598
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	5 cut(s)	66, 110, 306, 564, 885
Fsp4HI	GCNGC	5 cut(s)	66, 110, 306, 564, 885
FspBI	CTAG	2 cut(s)	12, 536
GluI	GCNGC	5 cut(s)	66, 110, 306, 564, 885
GsaI	CCCAGC	2 cut(s)	73, 891
HaeIII	GGCC	2 cut(s)	38, 847
HapII	CCGG	3 cut(s)	227, 582, 848
Hin1II	CATG	4 cut(s)	130, 469, 752, 833
HinfI	GANTC	7 cut(s)	76, 84, 118, 207, 323, 329, 654
HpaII	CCGG	3 cut(s)	227, 582, 848
HphI	GGTGA	2 cut(s)	71, 373
Hpy166II	GTNNAC	2 cut(s)	348, 533
Hpy188III	TCNNGA	4 cut(s)	122, 227, 647, 830
Hpy8I	GTNNAC	2 cut(s)	348, 533
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	5 cut(s)	70, 243, 281, 644, 786
HpyCH4III	ACNGT	2 cut(s)	701, 796
HpyCH4V	TGCA	7 cut(s)	166, 221, 424, 449, 524, 545, 884
HpyF3I	CTNAG	6 cut(s)	146, 261, 606, 666, 681, 852
Hsp92II	CATG	4 cut(s)	130, 469, 752, 833
Kpn2I	TCCGGA	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	847
KroNI	GCCGGC	1 cut(s)	849
Ksp22I	TGATCA	2 cut(s)	310, 598
Kzo9I	GATC	5 cut(s)	310, 598, 715, 772, 832
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	3 cut(s)	121, 550, 896
LweI	GCATC	4 cut(s)	175, 230, 262, 742
MabI	ACCWGGT	1 cut(s)	357
MaeI	CTAG	2 cut(s)	12, 536
MaeIII	GTNAC	3 cut(s)	55, 571, 862
MalI	GATC	5 cut(s)	312, 600, 717, 774, 834
MboI	GATC	5 cut(s)	310, 598, 715, 772, 832
MboII	GAAGA	8 cut(s)	177, 204, 277, 350, 395, 511, 635, 905
MfeI	CAATTG	1 cut(s)	904
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	4 cut(s)	141, 550, 610, 904
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	2 cut(s)	226, 357
MnlI	CCTC	8 cut(s)	27, 123, 248, 346, 403, 676, 795, 847
MroI	TCCGGA	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	847
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	2 cut(s)	140, 690
MslI	CAYNNNNRTG	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	3 cut(s)	227, 582, 848
MspR9I	CCNGG	5 cut(s)	46, 152, 359, 789, 816
MunI	CAATTG	1 cut(s)	904
MvaI	CCWGG	5 cut(s)	46, 152, 359, 789, 816
MvnI	CGCG	1 cut(s)	27
NaeI	GCCGGC	1 cut(s)	849
NdeII	GATC	5 cut(s)	310, 598, 715, 772, 832
NgoMIV	GCCGGC	1 cut(s)	847
NlaIII	CATG	4 cut(s)	130, 469, 752, 833
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	779
PagI	TCATGA	1 cut(s)	829
PdiI	GCCGGC	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	6 cut(s)	76, 84, 118, 207, 323, 329
PinAI	ACCGGT	1 cut(s)	581
PkrI	GCNGC	5 cut(s)	67, 111, 307, 565, 886
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	5 cut(s)	44, 150, 357, 787, 814
PspFI	CCCAGC	2 cut(s)	69, 887
PspGI	CCWGG	5 cut(s)	44, 150, 357, 787, 814
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	36, 355
PspPPI	RGGWCCY	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	772
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	140, 690
SatI	GCNGC	5 cut(s)	66, 110, 306, 564, 885
Sau3AI	GATC	5 cut(s)	310, 598, 715, 772, 832
Sau96I	GGNCC	2 cut(s)	36, 355
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	5 cut(s)	46, 152, 359, 789, 816
SduI	GDGCHC	1 cut(s)	625
SexAI	ACCWGGT	1 cut(s)	357
SfaNI	GCATC	4 cut(s)	175, 230, 262, 742
SfuI	TTCGAA	1 cut(s)	779
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	3 cut(s)	801, 809, 867
SmoI	CTYRAG	3 cut(s)	801, 809, 867
Sse9I	AATT	4 cut(s)	141, 550, 610, 904
SsiI	CCGC	3 cut(s)	66, 305, 872
SspMI	CTAG	2 cut(s)	12, 536
StyD4I	CCNGG	5 cut(s)	44, 150, 357, 787, 814
TaaI	ACNGT	2 cut(s)	701, 796
TaqI	TCGA	4 cut(s)	32, 657, 779, 835
TasI	AATT	4 cut(s)	141, 550, 610, 904
TauI	GCSGC	2 cut(s)	68, 308
TfiI	GAWTC	6 cut(s)	76, 84, 118, 207, 323, 329
Tru1I	TTAA	2 cut(s)	140, 690
Tru9I	TTAA	2 cut(s)	140, 690
TscAI	CASTG	2 cut(s)	60, 799
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	109, 563, 884
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	204, 818
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	60, 799
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	2 cut(s)	12, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.