AT4G26850

GDP-L-galactose phosphorylase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
13498956 .. 13501701
2746 bp
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UTR
Exon/CDS
Intron
AT4G26850.1

Sequence Viewer

Length: 1329 bp
ATGTTGAAAATCAAAAGAGTTCCGACCGTTGTTTCGAACTACCAGAAGGACGATGGAGCGGAGGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACGGGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTAAAATCCGGAGAGAAGCTTGTAATCAGTCATGAGGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGTCACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTTAACGAGGGTCGTCACTTGAAGAAGAGGCCAACTGAGTTCCGTGTAGATAAGGTGTTGCAGTCTTTTGATGGCAGCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCCAGTTTGAAGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGACTGCTTGCCTCAAAGGATCGATCACAAAAGCCTTTTGCTTGCAGTTCACATGGCTGCTGAGGCTGCTAATCCATACTTCAGACTCGGTTACAACAGCTTGGGTGCTTTTGCCACTATCAATCATCTCCACTTTCAGGCTTATTACTTGGCCATGCCTTTCCCACTGGAGAAAGCTCCTACCAAGAAGATAACTACCACTGTTAGTGGTGTCAAAATCTCAGAGCTTCTAAGTTACCCTGTGAGAAGTCTTCTCTTTGAAGGTGGAAGCTCTATGCAAGAACTATCTGATACTGTTTCAGACTGCTGTGTTTGCCTTCAAAACAACAACATTCCTTTCAACATTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAGGTGCTTCAGAGGATAACGCGTGGAGGCTCCTTGCGGAAGCTTCTCTGTCGGAGGAAAGGTTTAAGGAGGTTACTGCTCTCGCCTTTGAAGCCATAGGTTGTAGTAACCAAGAGGAGGATCTTGAAGGAACCATAGTTCATCAGCAAAACTCTAGTGGCAATGTTAACCAGAAAAGCAACAGAACCCATGGAGGTCCGATCACAAATGGGACGGCCGCCGAGTGCCTTGTCCTTCAGTGA

Protein Analysis

442

Amino Acids

48.97

Weight (kDa)

5.29

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPGP1_N PF26217 70 - 242 7.6e-76 GDPGP1-like, N-terminal domain
GDPGP1_C PF26216 249 - 396 1.3e-66 GDPGP1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AccII CGCG 1 cut(s) 1109
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 3 cut(s) 59, 1124, 1305
AclWI GGATC 4 cut(s) 59, 72, 608, 1215
AcoI YGGCCR 4 cut(s) 424, 553, 732, 1302
AcsI RAATTY 2 cut(s) 404, 508
AcuI CTGAAG 4 cut(s) 646, 1080, 1088, 1307
AfaI GTAC 1 cut(s) 1065
AfiI CCNNNNNNNGG 3 cut(s) 112, 718, 1204
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 9 cut(s) 7, 346, 409, 452, 842, 902, 922, 1178, 1214
AloI GAACNNNNNNTCC 4 cut(s) 227, 259, 1209, 1241
AluBI AGCT 9 cut(s) 166, 203, 325, 455, 681, 758, 808, 852, 1130
AluI AGCT 9 cut(s) 166, 203, 325, 455, 681, 758, 808, 852, 1130
AlwI GGATC 4 cut(s) 59, 72, 608, 1215
Ama87I CYCGRG 2 cut(s) 209, 298
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 5 cut(s) 353, 424, 553, 732, 1302
ApeKI GCWGC 4 cut(s) 399, 562, 638, 647
ApoI RAATTY 2 cut(s) 404, 508
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 1283
AsuC2I CCSGG 3 cut(s) 299, 300, 1007
AsuHPI GGTGA 2 cut(s) 470, 1007
AsuII TTCGAA 1 cut(s) 35
AvaI CYCGRG 2 cut(s) 209, 298
AvaII GGWCC 1 cut(s) 1283
BalI TGGCCA 3 cut(s) 426, 555, 734
BamHI GGATCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 1007
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 824
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 4 cut(s) 411, 549, 625, 634
BccI CCATC 3 cut(s) 47, 389, 536
BceAI ACGGC 2 cut(s) 1022, 1317
BcnI CCSGG 3 cut(s) 299, 300, 1007
BfaI CTAG 3 cut(s) 117, 992, 1242
BfmI CTRYAG 2 cut(s) 186, 198
BfoI RGCGCY 1 cut(s) 99
BglII AGATCT 1 cut(s) 951
BisI GCNGC 5 cut(s) 400, 563, 639, 648, 1305
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 5 cut(s) 401, 564, 640, 649, 1306
Bme1390I CCNGG 3 cut(s) 299, 300, 1007
Bme18I GGWCC 1 cut(s) 1283
BmeT110I CYCGRG 2 cut(s) 209, 298
BmgT120I GGNCC 1 cut(s) 1283
BmiI GGNNCC 4 cut(s) 66, 245, 1118, 1219
BmrFI CCNGG 3 cut(s) 299, 300, 1007
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 824
BpmI CTGGAG 1 cut(s) 770
Bpu10I CCTNAGC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 35
BpuMI CCSGG 3 cut(s) 299, 300, 1007
Bsa29I ATCGAT 1 cut(s) 603
BsaJI CCNNGG 4 cut(s) 91, 298, 299, 1276
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 1133, 1163
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 718, 1204
Bse1I ACTGG 3 cut(s) 445, 516, 753
Bse3DI GCAATG 1 cut(s) 1255
BseAI TCCGGA 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 4 cut(s) 91, 298, 299, 1276
BseLI CCNNNNNNNGG 3 cut(s) 112, 718, 1204
BseMI GCAATG 1 cut(s) 1255
BseMII CTCAG 5 cut(s) 335, 351, 495, 633, 816
BseNI ACTGG 3 cut(s) 445, 516, 753
BseRI GAGGAG 1 cut(s) 1217
BseX3I CGGCCG 1 cut(s) 1302
BseXI GCAGC 4 cut(s) 411, 549, 625, 634
BseYI CCCAGC 1 cut(s) 1033
Bsh1236I CGCG 1 cut(s) 1109
Bsh1285I CGRYCG 2 cut(s) 27, 1305
BshFI GGCC 5 cut(s) 355, 426, 555, 734, 1304
BshVI ATCGAT 1 cut(s) 603
BsiEI CGRYCG 2 cut(s) 27, 1305
BsiHKCI CYCGRG 2 cut(s) 209, 298
BsiSI CCGG 3 cut(s) 156, 299, 1007
BslFI GGGAC 2 cut(s) 199, 1312
BslI CCNNNNNNNGG 3 cut(s) 112, 718, 1204
BsmFI GGGAC 2 cut(s) 199, 1312
BsnI GGCC 5 cut(s) 355, 426, 555, 734, 1304
BsoBI CYCGRG 2 cut(s) 209, 298
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 1007
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 6 cut(s) 64, 600, 604, 951, 1207, 1287
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 1276
BspACI CCGC 3 cut(s) 59, 1124, 1305
BspANI GGCC 5 cut(s) 355, 426, 555, 734, 1304
BspCNI CTCAG 5 cut(s) 334, 352, 496, 634, 815
BspDI ATCGAT 1 cut(s) 603
BspEI TCCGGA 1 cut(s) 155
BspFNI CGCG 1 cut(s) 1109
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 4 cut(s) 66, 245, 1118, 1219
BspPI GGATC 4 cut(s) 59, 72, 608, 1215
BspQI GCTCTTC 1 cut(s) 446
BspT104I TTCGAA 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 1255
BsrI ACTGG 3 cut(s) 445, 516, 753
BssECI CCNNGG 4 cut(s) 91, 298, 299, 1276
BssMI GATC 6 cut(s) 64, 600, 604, 951, 1207, 1287
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 1276
Bst2BI CACGAG 1 cut(s) 573
Bst4CI ACNGT 4 cut(s) 28, 784, 877, 969
Bst6I CTCTTC 4 cut(s) 344, 426, 446, 1064
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 4 cut(s) 280, 491, 590, 624
BstDEI CTNAG 6 cut(s) 321, 360, 504, 642, 802, 812
BstDSI CCRYGG 1 cut(s) 1276
BstFNI CGCG 1 cut(s) 1109
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 6 cut(s) 67, 603, 607, 954, 1210, 1290
BstMBI GATC 6 cut(s) 64, 600, 604, 951, 1207, 1287
BstMCI CGRYCG 2 cut(s) 27, 1305
BstMWI GCNNNNNNNGC 5 cut(s) 102, 644, 647, 894, 1178
BstNSI RCATGY 2 cut(s) 138, 493
BstSCI CCNGG 3 cut(s) 297, 298, 1005
BstSFI CTRYAG 2 cut(s) 186, 198
BstUI CGCG 1 cut(s) 1109
BstV1I GCAGC 4 cut(s) 411, 549, 625, 634
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 3 cut(s) 64, 951, 1207
BstXI CCANNNNNNTGG 1 cut(s) 1041
BstYI RGATCY 3 cut(s) 64, 951, 1207
BstZI CGGCCG 1 cut(s) 1302
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 5 cut(s) 355, 426, 555, 734, 1304
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 1 cut(s) 1276
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 5 cut(s) 273, 523, 746, 780, 974
Cac8I GCNNGC 4 cut(s) 280, 491, 590, 624
CciI TCATGA 1 cut(s) 178
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 1283
Cfr9I CCCGGG 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 1 cut(s) 1064
CviAII CATG 8 cut(s) 135, 179, 490, 557, 634, 736, 1060, 1277
CviQI GTAC 1 cut(s) 1064
DdeI CTNAG 6 cut(s) 321, 360, 504, 642, 802, 812
DpnI GATC 6 cut(s) 66, 602, 606, 953, 1209, 1289
DpnII GATC 6 cut(s) 64, 600, 604, 951, 1207, 1287
EaeI YGGCCR 4 cut(s) 424, 553, 732, 1302
EagI CGGCCG 1 cut(s) 1302
Eam1104I CTCTTC 4 cut(s) 344, 426, 446, 1064
EarI CTCTTC 4 cut(s) 344, 426, 446, 1064
EclXI CGGCCG 1 cut(s) 1302
Eco130I CCWWGG 1 cut(s) 1276
Eco24I GRGCYC 1 cut(s) 1007
Eco47I GGWCC 1 cut(s) 1283
Eco52I CGGCCG 1 cut(s) 1302
Eco57I CTGAAG 4 cut(s) 646, 1080, 1088, 1307
Eco88I CYCGRG 2 cut(s) 209, 298
EcoRI GAATTC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 1276
EcoT22I ATGCAT 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 1007
ErhI CCWWGG 1 cut(s) 1276
FaeI CATG 8 cut(s) 138, 182, 493, 560, 637, 739, 1063, 1280
FaqI GGGAC 2 cut(s) 199, 1312
FatI CATG 8 cut(s) 134, 178, 489, 556, 633, 735, 1059, 1276
Fnu4HI GCNGC 5 cut(s) 400, 563, 639, 648, 1305
FriOI GRGCYC 1 cut(s) 1007
Fsp4HI GCNGC 5 cut(s) 400, 563, 639, 648, 1305
FspBI CTAG 3 cut(s) 117, 992, 1242
GlaI GCGC 1 cut(s) 97
GluI GCNGC 5 cut(s) 400, 563, 639, 648, 1305
GsaI CCCAGC 1 cut(s) 1037
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 5 cut(s) 355, 426, 555, 734, 1304
HapII CCGG 3 cut(s) 156, 299, 1007
HhaI GCGC 1 cut(s) 98
Hin1II CATG 8 cut(s) 138, 182, 493, 560, 637, 739, 1063, 1280
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 1255
HindII GTYRAC 1 cut(s) 1255
HindIII AAGCTT 2 cut(s) 164, 1128
HinfI GANTC 4 cut(s) 142, 212, 568, 666
HpaI GTTAAC 1 cut(s) 1255
HpaII CCGG 3 cut(s) 156, 299, 1007
HphI GGTGA 2 cut(s) 470, 1007
Hpy166II GTNNAC 4 cut(s) 80, 631, 1030, 1255
Hpy188III TCNNGA 5 cut(s) 156, 179, 209, 581, 1211
Hpy8I GTNNAC 4 cut(s) 80, 631, 1030, 1255
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 6 cut(s) 40, 836, 908, 939, 1082, 1208
HpyCH4III ACNGT 4 cut(s) 28, 784, 877, 969
HpyCH4V TGCA 5 cut(s) 134, 385, 489, 626, 859
HpyF10VI GCNNNNNNNGC 5 cut(s) 102, 644, 647, 894, 1178
HpyF3I CTNAG 6 cut(s) 321, 360, 504, 642, 802, 812
Hsp92II CATG 8 cut(s) 138, 182, 493, 560, 637, 739, 1063, 1280
HspAI GCGC 1 cut(s) 96
Kpn2I TCCGGA 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 1255
Kzo9I GATC 6 cut(s) 64, 600, 604, 951, 1207, 1287
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 3 cut(s) 56, 763, 1122
Lsp1109I GCAGC 4 cut(s) 411, 549, 625, 634
LweI GCATC 1 cut(s) 454
MaeI CTAG 3 cut(s) 117, 992, 1242
MaeIII GTNAC 8 cut(s) 271, 338, 671, 815, 971, 1055, 1159, 1193
MalI GATC 6 cut(s) 66, 602, 606, 953, 1209, 1289
MbiI CCGCTC 1 cut(s) 59
MboI GATC 6 cut(s) 64, 600, 604, 951, 1207, 1287
MflI RGATCY 3 cut(s) 64, 951, 1207
MhlI GDGCHC 1 cut(s) 1007
MlsI TGGCCA 3 cut(s) 426, 555, 734
MluCI AATT 3 cut(s) 85, 404, 508
MluI ACGCGT 1 cut(s) 1107
MluNI TGGCCA 3 cut(s) 426, 555, 734
MlyI GAGTC 2 cut(s) 221, 660
MmeI TCCRAC 2 cut(s) 47, 1119
Mox20I TGGCCA 3 cut(s) 426, 555, 734
Mph1103I ATGCAT 1 cut(s) 136
MroI TCCGGA 1 cut(s) 155
MscI TGGCCA 3 cut(s) 426, 555, 734
MseI TTAA 5 cut(s) 108, 327, 959, 1152, 1254
Msp20I TGGCCA 3 cut(s) 426, 555, 734
MspI CCGG 3 cut(s) 156, 299, 1007
MspR9I CCNGG 3 cut(s) 299, 300, 1007
MvnI CGCG 1 cut(s) 1109
MwoI GCNNNNNNNGC 5 cut(s) 102, 644, 647, 894, 1178
NciI CCSGG 3 cut(s) 299, 300, 1007
NcoI CCATGG 1 cut(s) 1276
NdeII GATC 6 cut(s) 64, 600, 604, 951, 1207, 1287
NlaIII CATG 8 cut(s) 138, 182, 493, 560, 637, 739, 1063, 1280
NlaIV GGNNCC 4 cut(s) 66, 245, 1118, 1219
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 3 cut(s) 271, 338, 1055
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 2 cut(s) 138, 493
NspV TTCGAA 1 cut(s) 35
PaeI GCATGC 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 209
PagI TCATGA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 446
PfeI GAWTC 2 cut(s) 142, 568
PkrI GCNGC 5 cut(s) 401, 564, 640, 649, 1306
PleI GAGTC 2 cut(s) 220, 660
PpsI GAGTC 2 cut(s) 220, 660
PspFI CCCAGC 1 cut(s) 1033
PspN4I GGNNCC 4 cut(s) 66, 245, 1118, 1219
PspPI GGNCC 1 cut(s) 1283
PsuI RGATCY 3 cut(s) 64, 951, 1207
RsaI GTAC 1 cut(s) 1065
RsaNI GTAC 1 cut(s) 1064
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 5 cut(s) 108, 327, 959, 1152, 1254
SatI GCNGC 5 cut(s) 400, 563, 639, 648, 1305
Sau3AI GATC 6 cut(s) 64, 600, 604, 951, 1207, 1287
Sau96I GGNCC 1 cut(s) 1283
SchI GAGTC 2 cut(s) 221, 660
ScrFI CCNGG 3 cut(s) 299, 300, 1007
SduI GDGCHC 1 cut(s) 1007
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 2 cut(s) 186, 198
Sfr274I CTCGAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 1 cut(s) 1283
SlaI CTCGAG 1 cut(s) 209
SmaI CCCGGG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 493
Sse9I AATT 3 cut(s) 85, 404, 508
SsiI CCGC 3 cut(s) 59, 1124, 1305
SspMI CTAG 3 cut(s) 117, 992, 1242
StyD4I CCNGG 3 cut(s) 297, 298, 1005
StyI CCWWGG 1 cut(s) 1276
TaaI ACNGT 4 cut(s) 28, 784, 877, 969
TaqI TCGA 3 cut(s) 35, 210, 603
TasI AATT 3 cut(s) 85, 404, 508
TauI GCSGC 1 cut(s) 1307
TfiI GAWTC 2 cut(s) 142, 568
Tru1I TTAA 5 cut(s) 108, 327, 959, 1152, 1254
Tru9I TTAA 5 cut(s) 108, 327, 959, 1152, 1254
TscAI CASTG 5 cut(s) 280, 523, 753, 787, 974
TseFI GTSAC 3 cut(s) 271, 338, 1055
TseI GCWGC 4 cut(s) 399, 562, 638, 647
Tsp45I GTSAC 3 cut(s) 271, 338, 1055
TspDTI ATGAA 1 cut(s) 1217
TspGWI ACGGA 2 cut(s) 97, 356
TspMI CCCGGG 1 cut(s) 298
TspRI CASTG 5 cut(s) 280, 523, 753, 787, 974
VpaK11BI GGWCC 1 cut(s) 1283
XapI RAATTY 2 cut(s) 404, 508
XceI RCATGY 2 cut(s) 138, 493
XcmI CCANNNNNNNNNTGG 2 cut(s) 50, 452
XhoI CTCGAG 1 cut(s) 209
XmaI CCCGGG 1 cut(s) 298
XspI CTAG 3 cut(s) 117, 992, 1242
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.