Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000095.1

Orthogroup ID

OG0004733

Physical Location & Seq

Genomic Coordinates Reverse (-)

4283 .. 4978

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000095.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggtggcagaagcagggagtccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaatcaccttcacttccaggcttactacttggccttaacctttcccattgaaaaggctcctaccaagaaaataaccagtttggatgttggggtgaagatctctgagcttctgagctatcctgttagaggtctagtttttgagggtggaaatactctggaagatttgtcaaactctgtctctgatgcttgtatatgccttcaagcgaacaacattgctttcaatgtcctcatatccgactgcggaaagcgggtctttctcttgccacagtgttatgctgagaaacaagctcttggggaagttagggcagagcttctggatactcaggtgaatccagctgtgtgggaaattagtggacatatggtgttaaagaggaagaaggggtatgatgaggcatctgatgaaaatactaggaagctccttgccgaggtctctctttctgaagagaggttccaagaggtgaatgctcttatatttggagccatagcttgtggtggtgatgatgggaatgcaaattcacttgacgatccagatgtgaatcctcgctatcatgaagaagtcagtgccattaacaaaagctcccgtcatgctatggagtcccggacccaggaatgccttgttctgcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008905 GO:0008928 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0010471 GO:0010472 GO:0010473 GO:0010474 GO:0010475 GO:0016043 GO:0016051 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0016772 GO:0016779 GO:0019318 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042221 GO:0042364 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046527 GO:0046677 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070568 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080046 GO:0080048 GO:0098542 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

DUF4922

Protein Analysis

231

Amino Acids

25.41

Weight (kDa)

4.99

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26850 AT5G55120
fragaria_vesca	FvH4_3g23310 FvH4_3g23310 FvH4_3g23310 FvH4_4g27370 FvH4_7g13380
malus_domestica	MD03G1195300.v1.1 MD11G1211800.v1.1
prunus_persica	Prupe.4G220800_v2.0.a1
pyrus_communis	pycom03g14760 pycom11g18690
rosa_chinensis	RchiOBHm_Chr1g0352701 RchiOBHm_Chr5g0041101
rosa_laevigata	RLG00000028319 RLG00000034024
rosa_multiflora	Rmu_co7960401.1_g000001 Rmu_sc0000095.1_g000002 Rmu_sc0042737.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039600 Rroxscaffold_4G00302460
rosa_rugosa	Rorug01G0231100 Rorug05G0189900
rosa_samantha	Rh1AG244200 Rh1BG214900 Rh1DG240900 Rh5AG275700 Rh5BG280400 Rh5CG312500 Rh5DG288700
rosa_wichuraiana	Rw5G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	309, 316
AclWI	GGATC	1 cut(s)	587
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	194, 493, 673
AgsI	TTSAA	3 cut(s)	119, 269, 289
AjnI	CCWGG	2 cut(s)	84, 672
AluBI	AGCT	9 cut(s)	48, 175, 183, 356, 379, 404, 484, 554, 645
AluI	AGCT	9 cut(s)	48, 175, 183, 356, 379, 404, 484, 554, 645
Alw26I	GTCTC	2 cut(s)	250, 502
AlwI	GGATC	1 cut(s)	587
AoxI	GGCC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	669
AsuC2I	CCSGG	1 cut(s)	667
AsuHPI	GGTGA	5 cut(s)	65, 172, 406, 538, 575
AvaII	GGWCC	1 cut(s)	669
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BccI	CCATC	2 cut(s)	74, 563
BciT130I	CCWGG	2 cut(s)	86, 674
BciVI	GTATCC	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	250, 502
BfaI	CTAG	2 cut(s)	200, 477
BfmI	CTRYAG	1 cut(s)	689
BfuI	GTATCC	1 cut(s)	379
BglII	AGATCT	1 cut(s)	165
Bme1390I	CCNGG	3 cut(s)	86, 667, 674
Bme18I	GGWCC	1 cut(s)	669
BmgT120I	GGNCC	1 cut(s)	669
BmiI	GGNNCC	4 cut(s)	126, 518, 547, 671
BmrFI	CCNGG	3 cut(s)	86, 667, 674
BmsI	GCATC	2 cut(s)	241, 470
BpuMI	CCSGG	1 cut(s)	667
BsaBI	GATNNNNATC	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	492, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 493, 673
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	86, 674
BseDI	CCNNGG	2 cut(s)	492, 672
BseGI	GGATG	1 cut(s)	157
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	3 cut(s)	194, 493, 673
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	4 cut(s)	162, 170, 336, 404
BseNI	ACTGG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	667
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	3 cut(s)	194, 493, 673
BsmAI	GTCTC	2 cut(s)	250, 502
BsmFI	GGGAC	1 cut(s)	649
BsmI	GAATGC	3 cut(s)	535, 580, 683
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	165, 592
BspACI	CCGC	2 cut(s)	309, 316
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	4 cut(s)	163, 171, 337, 403
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	4 cut(s)	126, 518, 547, 671
BspMAI	CTGCAG	1 cut(s)	693
BspPI	GGATC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	492, 672
BssMI	GATC	2 cut(s)	165, 592
Bst2UI	CCWGG	2 cut(s)	86, 674
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	504
BstDEI	CTNAG	4 cut(s)	171, 179, 345, 390
BstENI	CCTNNNNNAGG	2 cut(s)	192, 491
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	2 cut(s)	168, 595
BstMAI	GTCTC	2 cut(s)	250, 502
BstMBI	GATC	2 cut(s)	165, 592
BstNI	CCWGG	2 cut(s)	86, 674
BstSCI	CCNGG	3 cut(s)	84, 665, 672
BstSFI	CTRYAG	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	341, 634
CciI	TCATGA	1 cut(s)	616
Cfr13I	GGNCC	1 cut(s)	669
CviAII	CATG	2 cut(s)	617, 653
DdeI	CTNAG	4 cut(s)	171, 179, 345, 390
DpnI	GATC	2 cut(s)	167, 594
DpnII	GATC	2 cut(s)	165, 592
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	669
Eco57I	CTGAAG	1 cut(s)	528
EcoNI	CCTNNNNNAGG	2 cut(s)	192, 491
EcoRII	CCWGG	2 cut(s)	84, 672
FaeI	CATG	2 cut(s)	620, 656
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	2 cut(s)	616, 652
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	426
FokI	GGATG	1 cut(s)	164
FspBI	CTAG	2 cut(s)	200, 477
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	667
Hin1II	CATG	2 cut(s)	620, 656
HinfI	GANTC	4 cut(s)	19, 397, 604, 662
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	5 cut(s)	65, 172, 406, 538, 575
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	7 cut(s)	32, 172, 180, 250, 304, 466, 508
Hpy188III	TCNNGA	4 cut(s)	224, 383, 596, 617
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	3 cut(s)	86, 275, 439
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	56, 578, 691
HpyF3I	CTNAG	4 cut(s)	171, 179, 345, 390
Hsp92II	CATG	2 cut(s)	620, 656
Kzo9I	GATC	2 cut(s)	165, 592
LmnI	GCTCC	4 cut(s)	130, 489, 545, 650
LweI	GCATC	2 cut(s)	241, 470
MaeI	CTAG	2 cut(s)	200, 477
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	2 cut(s)	167, 594
MboI	GATC	2 cut(s)	165, 592
MboII	GAAGA	5 cut(s)	175, 239, 454, 521, 632
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	2 cut(s)	414, 580
MlyI	GAGTC	2 cut(s)	28, 671
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	9 cut(s)	188, 202, 305, 432, 451, 487, 507, 517, 618
MseI	TTAA	3 cut(s)	104, 434, 636
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	3 cut(s)	86, 667, 674
Mva1269I	GAATGC	3 cut(s)	535, 580, 683
MvaI	CCWGG	2 cut(s)	86, 674
NciI	CCSGG	1 cut(s)	667
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	2 cut(s)	165, 592
NlaIII	CATG	2 cut(s)	620, 656
NlaIV	GGNNCC	4 cut(s)	126, 518, 547, 671
NmeAIII	GCCGAG	1 cut(s)	517
PagI	TCATGA	1 cut(s)	616
PctI	GAATGC	3 cut(s)	535, 580, 683
PfeI	GAWTC	2 cut(s)	397, 604
PfoI	TCCNGGA	1 cut(s)	665
PleI	GAGTC	2 cut(s)	27, 670
PpsI	GAGTC	2 cut(s)	27, 670
Psp6I	CCWGG	2 cut(s)	84, 672
PspGI	CCWGG	2 cut(s)	84, 672
PspN4I	GGNNCC	4 cut(s)	126, 518, 547, 671
PspPI	GGNCC	1 cut(s)	669
PstI	CTGCAG	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	104, 434, 636
Sau3AI	GATC	2 cut(s)	165, 592
Sau96I	GGNCC	1 cut(s)	669
SchI	GAGTC	2 cut(s)	28, 671
ScrFI	CCNGG	3 cut(s)	86, 667, 674
SfaNI	GCATC	2 cut(s)	241, 470
SfcI	CTRYAG	1 cut(s)	689
SinI	GGWCC	1 cut(s)	669
Sse9I	AATT	2 cut(s)	414, 580
SsiI	CCGC	2 cut(s)	309, 316
SspMI	CTAG	2 cut(s)	200, 477
StyD4I	CCNGG	3 cut(s)	84, 665, 672
TaaI	ACNGT	1 cut(s)	336
TasI	AATT	2 cut(s)	414, 580
TfiI	GAWTC	2 cut(s)	397, 604
Tru1I	TTAA	3 cut(s)	104, 434, 636
Tru9I	TTAA	3 cut(s)	104, 434, 636
TscAI	CASTG	2 cut(s)	341, 634
TspDTI	ATGAA	2 cut(s)	483, 633
TspRI	CASTG	2 cut(s)	341, 634
VpaK11BI	GGWCC	1 cut(s)	669
XagI	CCTNNNNNAGG	2 cut(s)	192, 491
XapI	RAATTY	1 cut(s)	580
XspI	CTAG	2 cut(s)	200, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.