pycom11g18690

GDP-L-galactose phosphorylase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
20868449 .. 20870698
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18690.4

Sequence Viewer

Length: 1344 bp
ATGATGTTGAGGATCAAAAGGGTTCCCACCGTCGTTTCGAATTACCAGAAAGATGAGGCGGAGGAGGGTGCTCGCCGCGTCGAGGGTTGTGGCCGCAATTGCCTTAACCAATGTTGCATTCCAGGGGCAAAACTTCCATTGTATGCCTTCAAGAAGCGGAACGTGAATAATGGTGACACGGGTGTGCCCGGACATGACAAAAGAGAGCCTCCCGTTGCGTTTCTTGACTCGCTGCTTCTCGGGCAGTGGGAGGATCGCATGCAGAGAGGGCTATTTCGCTATGATGTCACTGCTTGTGAAACCAAGGTGATCGAAGGGCAATATGGTTTCATTGCCCAGCTGAATGAGGGTCGCCATCTTAAGAAGAGACCAACTGAGTTTCGAGTTGATAAGGTCCTCCAGCCCTTTGATAGCAGCAAGTTTAACTTCACTAAAGTTGGACAAGAGGAGGTTCTATTCCAGTTTGAAGCCAGTGAAGATGGTGAAGTTCACTTTTTCCCTAGTGCACCCATTGATGTTGAAAATTCTCCGAGTGTTGTTGCCATTAATGTCAGTCCTATTGAATATGGCCATGTGCTGTTGATTCCTCGTATTTTTGAGCGTTTGCCACAAAGGATTGACCGGGAAAGCTTCTTGCTTGCACTTCACATGGCGGCTGAAGCTGGGAGTCCTTACTTTCGATTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAATCACCTTCACTTCCAGGCTTACTTCTTGGACGTGACCTTTCCCATTGAGAAGGCTCCTACCAAGAAAATATCCACTCTGAATGCTGAGGTGAAGGTCTCTGAGCTTCTGAACTATCCTGTCAGAGGTCTTGTTTTTGAGGGTGGAAAGACTATGGAAGATTTGTCTTACACCGTCTCTGATGCCTGCATATGCCTTCAAGAAAACAACATACCGTACAATGTCCTTATCTCTGATTGTGGAAAGCGAATCTTTCTCCTGCCACAGTGTTATGCTGAGAAACAAGCTCTCGGAGAAGTGAGTGCAGAGATTCTGGATACACAGGTGAATCCAGCGGTGTGGGAAATTAGTGGGCATATGGTCTTGAAGAGGAAAAAGGACTACGATGAGGCTTCAGATGAAAATGCTTGGAAGCTCCTGGCAGAGGTTTCCCTTTCTGAAGAGAGGTTCCAAGAAGTGAATGCTCTTATTTTCGAACGTATTGCTTCTGGTAATAATGGGAATGAAAATTTGCCGGAGGATCCAGAAGTTAAGCCTCGTTCTCATGAAGAAGTCGACACTACCATTAACAAAAGCTCGCGCACTGCTATGGTGAGTGGGACACAAGAATGCATTGTTCTGCAGTAA

Protein Analysis

448

Amino Acids

50.39

Weight (kDa)

5.29

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1272
AccII CGCG 2 cut(s) 78, 1297
AciI CCGC 6 cut(s) 59, 76, 94, 157, 653, 1052
AclWI GGATC 4 cut(s) 20, 261, 1232, 1245
AcoI YGGCCR 2 cut(s) 91, 568
AcsI RAATTY 2 cut(s) 523, 1225
AcuI CTGAAG 3 cut(s) 678, 1095, 1176
AfaI GTAC 1 cut(s) 935
AfiI CCNNNNNNNGG 3 cut(s) 82, 842, 1141
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 6 cut(s) 151, 467, 521, 563, 917, 1084
AjiI CACGTC 1 cut(s) 751
AjnI CCWGG 3 cut(s) 121, 732, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AleI CACNNNNGTG 1 cut(s) 182
AluBI AGCT 8 cut(s) 340, 630, 662, 696, 823, 1004, 1132, 1293
AluI AGCT 8 cut(s) 340, 630, 662, 696, 823, 1004, 1132, 1293
Alw21I GWGCWC 2 cut(s) 73, 508
Alw26I GTCTC 3 cut(s) 361, 820, 898
Alw44I GTGCAC 1 cut(s) 504
AlwI GGATC 4 cut(s) 20, 261, 1232, 1245
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 91, 568
ApaLI GTGCAC 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 232, 414
ApoI RAATTY 2 cut(s) 523, 1225
AseI ATTAAT 1 cut(s) 546
AspLEI GCGC 1 cut(s) 1299
AspS9I GGNCC 1 cut(s) 394
AsuC2I CCSGG 2 cut(s) 189, 623
AsuHPI GGTGA 7 cut(s) 185, 319, 494, 713, 820, 1054, 1321
AsuII TTCGAA 2 cut(s) 38, 1191
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 2 cut(s) 189, 508
BaeI ACNNNNGTAYC 2 cut(s) 1026, 1059
BalI TGGCCA 1 cut(s) 570
BamHI GGATCC 1 cut(s) 1237
Bbv12I GWGCWC 2 cut(s) 73, 508
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 2 cut(s) 219, 426
BccI CCATC 3 cut(s) 363, 473, 722
BcgI CGANNNNNNTGC 2 cut(s) 1181, 1215
BciT130I CCWGG 3 cut(s) 123, 734, 1136
BciVI GTATCC 1 cut(s) 1027
BcnI CCSGG 2 cut(s) 189, 623
BcoDI GTCTC 3 cut(s) 361, 820, 898
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 1337
BfrI CTTAAG 1 cut(s) 359
BfuI GTATCC 1 cut(s) 1027
BisI GCNGC 5 cut(s) 76, 94, 233, 415, 654
BlsI GCNGC 5 cut(s) 77, 95, 234, 416, 655
Bme1390I CCNGG 5 cut(s) 123, 189, 623, 734, 1136
Bme18I GGWCC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 4 cut(s) 24, 774, 1166, 1239
BmrFI CCNGG 5 cut(s) 123, 189, 623, 734, 1136
BmsI GCATC 1 cut(s) 889
BpmI CTGGAG 1 cut(s) 383
Bpu10I CCTNAGC 1 cut(s) 804
Bpu14I TTCGAA 2 cut(s) 38, 1191
BpuMI CCSGG 2 cut(s) 189, 623
BsaI GGTCTC 2 cut(s) 361, 820
BsaJI CCNNGG 2 cut(s) 122, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 842, 1141
Bse1I ACTGG 2 cut(s) 460, 471
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 3 cut(s) 123, 734, 1136
BseDI CCNNGG 2 cut(s) 122, 303
BseLI CCNNNNNNNGG 3 cut(s) 82, 842, 1141
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 4 cut(s) 366, 795, 810, 984
BseNI ACTGG 2 cut(s) 460, 471
BseRI GAGGAG 2 cut(s) 77, 461
BseSI GKGCMC 2 cut(s) 189, 508
BseXI GCAGC 2 cut(s) 219, 426
BseYI CCCAGC 2 cut(s) 336, 662
BsgI GTGCAG 1 cut(s) 1041
Bsh1236I CGCG 2 cut(s) 78, 1297
BshFI GGCC 2 cut(s) 93, 570
BsiHKAI GWGCWC 2 cut(s) 73, 508
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 3 cut(s) 189, 622, 1232
BslFI GGGAC 1 cut(s) 1330
BslI CCNNNNNNNGG 3 cut(s) 82, 842, 1141
BsmAI GTCTC 3 cut(s) 361, 820, 898
BsmBI CGTCTC 1 cut(s) 898
BsmFI GGGAC 1 cut(s) 1330
BsmI GAATGC 4 cut(s) 117, 805, 1183, 1331
BsnI GGCC 2 cut(s) 93, 570
Bso31I GGTCTC 2 cut(s) 361, 820
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 2 cut(s) 38, 1191
Bsp1286I GDGCHC 3 cut(s) 73, 189, 508
Bsp143I GATC 4 cut(s) 12, 253, 309, 1237
BspACI CCGC 6 cut(s) 59, 76, 94, 157, 653, 1052
BspANI GGCC 2 cut(s) 93, 570
BspCNI CTCAG 4 cut(s) 367, 796, 811, 985
BspFNI CGCG 2 cut(s) 78, 1297
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 4 cut(s) 24, 774, 1166, 1239
BspMAI CTGCAG 1 cut(s) 1341
BspPI GGATC 4 cut(s) 20, 261, 1232, 1245
BspT104I TTCGAA 2 cut(s) 38, 1191
BspTI CTTAAG 1 cut(s) 359
BspTNI GGTCTC 2 cut(s) 361, 820
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 2 cut(s) 460, 471
BssECI CCNNGG 2 cut(s) 122, 303
BssMI GATC 4 cut(s) 12, 253, 309, 1237
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 3 cut(s) 123, 734, 1136
Bst4CI ACNGT 4 cut(s) 31, 892, 933, 984
Bst6I CTCTTC 3 cut(s) 359, 1079, 1152
BstAFI CTTAAG 1 cut(s) 359
BstBI TTCGAA 2 cut(s) 38, 1191
BstC8I GCNNGC 5 cut(s) 73, 260, 639, 904, 1295
BstDEI CTNAG 4 cut(s) 375, 804, 819, 993
BstENI CCTNNNNNAGG 2 cut(s) 840, 1139
BstFNI CGCG 2 cut(s) 78, 1297
BstHHI GCGC 1 cut(s) 1299
BstKTI GATC 4 cut(s) 15, 256, 312, 1240
BstMAI GTCTC 3 cut(s) 361, 820, 898
BstMBI GATC 4 cut(s) 12, 253, 309, 1237
BstMWI GCNNNNNNNGC 4 cut(s) 99, 241, 268, 659
BstNI CCWGG 3 cut(s) 123, 734, 1136
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 5 cut(s) 121, 187, 621, 732, 1134
BstSFI CTRYAG 1 cut(s) 1337
BstSLI GKGCMC 2 cut(s) 189, 508
BstUI CGCG 2 cut(s) 78, 1297
BstV1I GCAGC 2 cut(s) 219, 426
BstX2I RGATCY 1 cut(s) 1237
BstXI CCANNNNNNTGG 1 cut(s) 1056
BstYI RGATCY 1 cut(s) 1237
BsuI GTATCC 1 cut(s) 1027
BsuRI GGCC 2 cut(s) 93, 570
BtrI CACGTC 1 cut(s) 751
BtsI GCAGTG 3 cut(s) 251, 288, 1299
BtsIMutI CAGTG 5 cut(s) 251, 288, 478, 989, 1299
Cac8I GCNNGC 5 cut(s) 73, 260, 639, 904, 1295
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 1 cut(s) 1299
Cfr13I GGNCC 1 cut(s) 394
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 934
CviAII CATG 5 cut(s) 194, 259, 572, 649, 1262
CviQI GTAC 1 cut(s) 934
DdeI CTNAG 4 cut(s) 375, 804, 819, 993
DpnI GATC 4 cut(s) 14, 255, 311, 1239
DpnII GATC 4 cut(s) 12, 253, 309, 1237
EaeI YGGCCR 2 cut(s) 91, 568
Eam1104I CTCTTC 3 cut(s) 359, 1079, 1152
EarI CTCTTC 3 cut(s) 359, 1079, 1152
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 303
Eco31I GGTCTC 2 cut(s) 361, 820
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 3 cut(s) 678, 1095, 1176
Eco88I CYCGRG 1 cut(s) 239
EcoNI CCTNNNNNAGG 2 cut(s) 840, 1139
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 3 cut(s) 121, 732, 1134
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 1331
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 898
FaeI CATG 5 cut(s) 197, 262, 575, 652, 1265
FalI AAGNNNNNCTT 4 cut(s) 410, 442, 953, 985
FaqI GGGAC 1 cut(s) 1330
FatI CATG 5 cut(s) 193, 258, 571, 648, 1261
FauNDI CATATG 2 cut(s) 908, 1074
FblI GTMKAC 1 cut(s) 1272
Fnu4HI GCNGC 5 cut(s) 76, 94, 233, 415, 654
Fsp4HI GCNGC 5 cut(s) 76, 94, 233, 415, 654
FspBI CTAG 1 cut(s) 501
GlaI GCGC 1 cut(s) 1298
GluI GCNGC 5 cut(s) 76, 94, 233, 415, 654
GsaI CCCAGC 2 cut(s) 340, 666
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 2 cut(s) 93, 570
HapII CCGG 3 cut(s) 189, 622, 1232
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 1299
Hin1II CATG 5 cut(s) 197, 262, 575, 652, 1265
Hin6I GCGC 1 cut(s) 1297
HinP1I GCGC 1 cut(s) 1297
HincII GTYRAC 1 cut(s) 1273
HindII GTYRAC 1 cut(s) 1273
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 6 cut(s) 227, 583, 667, 966, 1027, 1045
HpaII CCGG 3 cut(s) 189, 622, 1232
HphI GGTGA 7 cut(s) 185, 319, 494, 713, 820, 1054, 1321
Hpy166II GTNNAC 3 cut(s) 490, 506, 1273
Hpy188III TCNNGA 7 cut(s) 151, 224, 917, 1031, 1081, 1241, 1262
Hpy8I GTNNAC 3 cut(s) 490, 506, 1273
Hpy99I CGWCG 2 cut(s) 35, 83
HpyAV CCTTC 6 cut(s) 157, 308, 734, 763, 805, 923
HpyCH4III ACNGT 4 cut(s) 31, 892, 933, 984
HpyCH4IV ACGT 3 cut(s) 162, 750, 1195
HpyCH4V TGCA 9 cut(s) 117, 262, 506, 641, 704, 906, 1022, 1329, 1339
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 241, 268, 659
HpyF3I CTNAG 4 cut(s) 375, 804, 819, 993
HpySE526I ACGT 3 cut(s) 162, 750, 1195
Hsp92II CATG 5 cut(s) 197, 262, 575, 652, 1265
HspAI GCGC 1 cut(s) 1297
Kzo9I GATC 4 cut(s) 12, 253, 309, 1237
LmnI GCTCC 2 cut(s) 778, 1137
Lsp1109I GCAGC 2 cut(s) 219, 426
LweI GCATC 1 cut(s) 889
MaeI CTAG 1 cut(s) 501
MaeII ACGT 3 cut(s) 162, 750, 1195
MaeIII GTNAC 4 cut(s) 173, 286, 686, 751
MalI GATC 4 cut(s) 14, 255, 311, 1239
MboI GATC 4 cut(s) 12, 253, 309, 1237
MboII GAAGA 6 cut(s) 376, 488, 887, 1096, 1169, 1277
MfeI CAATTG 1 cut(s) 97
MflI RGATCY 1 cut(s) 1237
MhlI GDGCHC 3 cut(s) 73, 189, 508
MlsI TGGCCA 1 cut(s) 570
MluCI AATT 5 cut(s) 40, 97, 523, 1062, 1225
MluNI TGGCCA 1 cut(s) 570
MlyI GAGTC 2 cut(s) 221, 676
MmeI TCCRAC 1 cut(s) 418
Mox20I TGGCCA 1 cut(s) 570
Mph1103I ATGCAT 1 cut(s) 1331
MscI TGGCCA 1 cut(s) 570
MseI TTAA 6 cut(s) 105, 360, 423, 546, 1248, 1284
MslI CAYNNNNRTG 3 cut(s) 182, 1304, 1324
Msp20I TGGCCA 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 340, 1052
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 3 cut(s) 189, 622, 1232
MspR9I CCNGG 5 cut(s) 123, 189, 623, 734, 1136
MunI CAATTG 1 cut(s) 97
Mva1269I GAATGC 4 cut(s) 117, 805, 1183, 1331
MvaI CCWGG 3 cut(s) 123, 734, 1136
MvnI CGCG 2 cut(s) 78, 1297
MwoI GCNNNNNNNGC 4 cut(s) 99, 241, 268, 659
NciI CCSGG 2 cut(s) 189, 623
NdeI CATATG 2 cut(s) 908, 1074
NdeII GATC 4 cut(s) 12, 253, 309, 1237
NlaIII CATG 5 cut(s) 197, 262, 575, 652, 1265
NlaIV GGNNCC 4 cut(s) 24, 774, 1166, 1239
NmuCI GTSAC 3 cut(s) 173, 286, 751
NsiI ATGCAT 1 cut(s) 1331
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 2 cut(s) 38, 1191
OliI CACNNNNGTG 1 cut(s) 182
PaeI GCATGC 1 cut(s) 262
PagI TCATGA 1 cut(s) 1261
PctI GAATGC 4 cut(s) 117, 805, 1183, 1331
PfeI GAWTC 4 cut(s) 583, 966, 1027, 1045
PkrI GCNGC 5 cut(s) 77, 95, 234, 416, 655
PleI GAGTC 2 cut(s) 221, 675
PpsI GAGTC 2 cut(s) 221, 675
PpuMI RGGWCCY 1 cut(s) 394
PshBI ATTAAT 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 3 cut(s) 121, 732, 1134
PspFI CCCAGC 2 cut(s) 336, 662
PspGI CCWGG 3 cut(s) 121, 732, 1134
PspN4I GGNNCC 4 cut(s) 24, 774, 1166, 1239
PspPI GGNCC 1 cut(s) 394
PspPPI RGGWCCY 1 cut(s) 394
PstI CTGCAG 1 cut(s) 1341
PsuI RGATCY 1 cut(s) 1237
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 1 cut(s) 935
RsaNI GTAC 1 cut(s) 934
RseI CAYNNNNRTG 3 cut(s) 182, 1304, 1324
SalI GTCGAC 1 cut(s) 1271
SaqAI TTAA 6 cut(s) 105, 360, 423, 546, 1248, 1284
SatI GCNGC 5 cut(s) 76, 94, 233, 415, 654
Sau3AI GATC 4 cut(s) 12, 253, 309, 1237
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 2 cut(s) 221, 676
ScrFI CCNGG 5 cut(s) 123, 189, 623, 734, 1136
SduI GDGCHC 3 cut(s) 73, 189, 508
SfaNI GCATC 1 cut(s) 889
SfcI CTRYAG 1 cut(s) 1337
SfuI TTCGAA 2 cut(s) 38, 1191
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 3 cut(s) 182, 1304, 1324
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 262
Sse9I AATT 5 cut(s) 40, 97, 523, 1062, 1225
SsiI CCGC 6 cut(s) 59, 76, 94, 157, 653, 1052
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 5 cut(s) 121, 187, 621, 732, 1134
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 4 cut(s) 31, 892, 933, 984
TaiI ACGT 3 cut(s) 165, 753, 1198
TaqI TCGA 7 cut(s) 38, 81, 312, 382, 679, 1191, 1272
TasI AATT 5 cut(s) 40, 97, 523, 1062, 1225
TauI GCSGC 3 cut(s) 78, 96, 656
TfiI GAWTC 4 cut(s) 583, 966, 1027, 1045
Tru1I TTAA 6 cut(s) 105, 360, 423, 546, 1248, 1284
Tru9I TTAA 6 cut(s) 105, 360, 423, 546, 1248, 1284
TscAI CASTG 5 cut(s) 251, 295, 478, 989, 1306
TseFI GTSAC 3 cut(s) 173, 286, 751
TseI GCWGC 2 cut(s) 232, 414
Tsp45I GTSAC 3 cut(s) 173, 286, 751
TspDTI ATGAA 4 cut(s) 319, 1131, 1236, 1278
TspRI CASTG 5 cut(s) 251, 295, 478, 989, 1306
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 394
VspI ATTAAT 1 cut(s) 546
XagI CCTNNNNNAGG 2 cut(s) 840, 1139
XapI RAATTY 2 cut(s) 523, 1225
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 1272
XspI CTAG 1 cut(s) 501
Zsp2I ATGCAT 1 cut(s) 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.