MD03G1195300.v1.1

GDP-L-galactose phosphorylase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
26735359 .. 26738585
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1195300.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGAGCATGACGTTGAGGATCAAGAGGGTTCCCACCGTCGTTTCGAATTACCAGAAAGATGAGGCGGAGGAAGGTGCTCGCCGCGTCGGGGGCTGCGGCCGCAACTGCCTTAACCAATGTTGCATTCCAGGTGCAAAACTTCCATTGTATGCCTTCAAGAAGCTGAACGTGAATGATGGTGACACGGGTTTGCTAGGACGTGAGAAAAGAGAGCCTCCCGTTGCATTTCTTGACTCACTGCTTCTCGGGGAGTGGGAGGATCGCATGCAGAGAGGGCTATTTCGCTATGATGTCACTGCTTGTGAAACCAAGGTGATCCCAGGGCAATTTGGTTTCATAGCCCAGCTGAATGAGGGTCGCCATCTTAAGAAGCGGCCAACAGAGTTTCGAGTTGATAAGGTCCTCCAGCCCTTTGATGGCAGCAAGTTTAACTTCACTAAAGTTGGACAAGAGGAGGTTCTGTTCCAGTTTGAAGCCAGCAAAGATGGTGAAGTTCAGTTTTTCCCCAGCGCACCCATTGATGTTGAAAGTTCTCCGAGCGTTGTGGCCATTAATGTCAGTCCAATTGAATATGGCCATGTGCTGTTGATTCCTCACATTCTTGAGCGATTGCCTCAAAGGATTGACCGGGAAAGCTTCTTGCTTGCACTTCACATGGCGGCTGAAGCAGGGAATCCTTACTTTCGATTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAATCACCTTCACTTCCAGGCTTACTACCTGGCCGTGACCTTTCCCATTGAGAAGGCTCCTACCAAAAAAATATCCACTTTGAATGCCGAGGTGAAGGTCTCTGAGCTTCTGAATTATCCAGTCAGAGGTCTTGTTTTTGAGGGTGGAAATACTCTGCAAGATTTGTCAAACACCGTCTCTGATGCCTGCATATGCCTTCAAGAGAACAACATACCTTACAATGTCCTTATCTCTGACTCTGGAAAGCGAATCTTTCTCGTGCCACAGTGTTATGCTGAGAAACAAGCTCTTGGGGAAGTGAGAGCAGAGATTCTGGATACACAGGTGAATCCAGCTGTGTGGGAAATTAGTGGGCATATGGTGCTAAAGAGGAAAAAGGACTATGATGAGGCGTCGGATGAAAATGCTTGGAAGCTCCTGGCAGAGGTCTCCCTTTCTGAAGAAAGGTTCCTAGAAGTGAATGCTCTTATTTTCGAAGGTATTGCTTCAGGTGATAACGGGAATGAAAACTTGCTCAAGGATCCAGAAGTTAAGCCTCGTTCTCATGAAGAAGTCAACACCATCAACAAAAGAGTGCATTGTTCTGCAGTAAATGAGCAGATTTGTCGGGTGTTTACAATGTGA

Protein Analysis

449

Amino Acids

50.3

Weight (kDa)

5.65

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPGP1_N PF26217 77 - 249 6.1e-78 GDPGP1-like, N-terminal domain
GDPGP1_C PF26216 256 - 402 1e-68 GDPGP1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 84
AciI CCGC 6 cut(s) 65, 82, 96, 100, 373, 659
AclWI GGATC 5 cut(s) 26, 267, 310, 1238, 1251
AcoI YGGCCR 5 cut(s) 97, 374, 546, 574, 753
AcuI CTGAAG 3 cut(s) 684, 1182, 1194
AcyI GRCGYC 1 cut(s) 1115
AfiI CCNNNNNNNGG 4 cut(s) 88, 416, 848, 1147
AflII CTTAAG 1 cut(s) 365
AgsI TTSAA 6 cut(s) 157, 473, 527, 569, 805, 923
AjiI CACGTC 1 cut(s) 200
AjnI CCWGG 5 cut(s) 127, 319, 738, 750, 1140
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AloI GAACNNNNNNTCC 2 cut(s) 446, 478
AluBI AGCT 8 cut(s) 163, 346, 636, 702, 829, 1010, 1058, 1138
AluI AGCT 8 cut(s) 163, 346, 636, 702, 829, 1010, 1058, 1138
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 3 cut(s) 826, 904, 1156
AlwI GGATC 5 cut(s) 26, 267, 310, 1238, 1251
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 5 cut(s) 97, 374, 546, 574, 753
ApeKI GCWGC 2 cut(s) 93, 420
AseI ATTAAT 1 cut(s) 552
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 7 cut(s) 191, 325, 500, 719, 826, 1060, 1226
AsuII TTCGAA 2 cut(s) 44, 1197
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 400
BaeI ACNNNNGTAYC 2 cut(s) 1032, 1065
BalI TGGCCA 2 cut(s) 548, 576
BamHI GGATCC 1 cut(s) 1243
BauI CACGAG 1 cut(s) 980
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 80, 432
BccI CCATC 6 cut(s) 170, 369, 410, 479, 728, 1292
BceAI ACGGC 1 cut(s) 740
BcgI CGANNNNNNTGC 4 cut(s) 1187, 1221, 1310, 1344
BciT130I CCWGG 5 cut(s) 129, 321, 740, 752, 1142
BciVI GTATCC 1 cut(s) 1033
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 3 cut(s) 826, 904, 1156
BfaI CTAG 2 cut(s) 194, 1175
BfmI CTRYAG 1 cut(s) 1308
BfrI CTTAAG 1 cut(s) 365
BfuI GTATCC 1 cut(s) 1033
BisI GCNGC 7 cut(s) 82, 94, 97, 100, 374, 421, 660
BlsI GCNGC 7 cut(s) 83, 95, 98, 101, 375, 422, 661
Bme1390I CCNGG 6 cut(s) 129, 321, 629, 740, 752, 1142
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 4 cut(s) 30, 780, 1172, 1245
BmrFI CCNGG 6 cut(s) 129, 321, 629, 740, 752, 1142
BmsI GCATC 1 cut(s) 895
BpmI CTGGAG 1 cut(s) 389
Bpu14I TTCGAA 2 cut(s) 44, 1197
BpuEI CTTGAG 2 cut(s) 623, 1223
BpuMI CCSGG 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 1115
BsaI GGTCTC 2 cut(s) 826, 1156
BsaJI CCNNGG 4 cut(s) 309, 319, 320, 810
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 416, 848, 1147
Bse1I ACTGG 2 cut(s) 466, 842
BseBI CCWGG 5 cut(s) 129, 321, 740, 752, 1142
BseDI CCNNGG 4 cut(s) 309, 319, 320, 810
BseGI GGATG 1 cut(s) 1126
BseLI CCNNNNNNNGG 4 cut(s) 88, 416, 848, 1147
BseMII CTCAG 2 cut(s) 816, 990
BseNI ACTGG 2 cut(s) 466, 842
BseRI GAGGAG 1 cut(s) 467
BseX3I CGGCCG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 80, 432
BseYI CCCAGC 2 cut(s) 342, 506
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 99, 376, 548, 576, 755
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 628
BslI CCNNNNNNNGG 4 cut(s) 88, 416, 848, 1147
BsmAI GTCTC 3 cut(s) 826, 904, 1156
BsmBI CGTCTC 1 cut(s) 904
BsmI GAATGC 3 cut(s) 123, 811, 1189
BsnI GGCC 5 cut(s) 99, 376, 548, 576, 755
Bso31I GGTCTC 2 cut(s) 826, 1156
BsoBI CYCGRG 1 cut(s) 245
Bsp119I TTCGAA 2 cut(s) 44, 1197
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 4 cut(s) 18, 259, 315, 1243
BspACI CCGC 6 cut(s) 65, 82, 96, 100, 373, 659
BspANI GGCC 5 cut(s) 99, 376, 548, 576, 755
BspCNI CTCAG 2 cut(s) 817, 991
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 4 cut(s) 30, 780, 1172, 1245
BspMAI CTGCAG 1 cut(s) 1312
BspPI GGATC 5 cut(s) 26, 267, 310, 1238, 1251
BspT104I TTCGAA 2 cut(s) 44, 1197
BspTI CTTAAG 1 cut(s) 365
BspTNI GGTCTC 2 cut(s) 826, 1156
BsrI ACTGG 2 cut(s) 466, 842
BssECI CCNNGG 4 cut(s) 309, 319, 320, 810
BssMI GATC 4 cut(s) 18, 259, 315, 1243
BssNI GRCGYC 1 cut(s) 1115
BssSI CACGAG 1 cut(s) 980
BssT1I CCWWGG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 980
Bst2UI CCWGG 5 cut(s) 129, 321, 740, 752, 1142
Bst4CI ACNGT 3 cut(s) 37, 898, 990
BstACI GRCGYC 1 cut(s) 1115
BstAFI CTTAAG 1 cut(s) 365
BstAPI GCANNNNNTGC 1 cut(s) 1084
BstBI TTCGAA 2 cut(s) 44, 1197
BstC8I GCNNGC 5 cut(s) 79, 266, 478, 645, 910
BstDEI CTNAG 2 cut(s) 825, 999
BstENI CCTNNNNNAGG 1 cut(s) 1145
BstF5I GGATG 1 cut(s) 1126
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 4 cut(s) 21, 262, 318, 1246
BstMAI GTCTC 3 cut(s) 826, 904, 1156
BstMBI GATC 4 cut(s) 18, 259, 315, 1243
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 6 cut(s) 90, 99, 105, 274, 665, 1084
BstNI CCWGG 5 cut(s) 129, 321, 740, 752, 1142
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 6 cut(s) 127, 319, 627, 738, 750, 1140
BstSFI CTRYAG 1 cut(s) 1308
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 80, 432
BstX2I RGATCY 1 cut(s) 1243
BstXI CCANNNNNNTGG 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 1243
BstZI CGGCCG 1 cut(s) 97
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 5 cut(s) 99, 376, 548, 576, 755
BtrI CACGTC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 1126
BtsI GCAGTG 2 cut(s) 236, 294
BtsIMutI CAGTG 3 cut(s) 236, 294, 995
Cac8I GCNNGC 5 cut(s) 79, 266, 478, 645, 910
CciI TCATGA 1 cut(s) 1267
CciNI GCGGCCGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 400
CseI GACGC 2 cut(s) 73, 1104
CviAII CATG 5 cut(s) 7, 265, 578, 655, 1268
DdeI CTNAG 2 cut(s) 825, 999
DpnI GATC 4 cut(s) 20, 261, 317, 1245
DpnII GATC 4 cut(s) 18, 259, 315, 1243
EaeI YGGCCR 5 cut(s) 97, 374, 546, 574, 753
EagI CGGCCG 1 cut(s) 97
EciI GGCGGA 1 cut(s) 80
EclXI CGGCCG 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 309
Eco31I GGTCTC 2 cut(s) 826, 1156
Eco47I GGWCC 1 cut(s) 400
Eco52I CGGCCG 1 cut(s) 97
Eco57I CTGAAG 3 cut(s) 684, 1182, 1194
Eco88I CYCGRG 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 1145
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 5 cut(s) 127, 319, 738, 750, 1140
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 904
FaeI CATG 5 cut(s) 10, 268, 581, 658, 1271
FalI AAGNNNNNCTT 4 cut(s) 416, 448, 959, 991
FatI CATG 5 cut(s) 6, 264, 577, 654, 1267
FauNDI CATATG 2 cut(s) 914, 1080
Fnu4HI GCNGC 7 cut(s) 82, 94, 97, 100, 374, 421, 660
FokI GGATG 1 cut(s) 1133
Fsp4HI GCNGC 7 cut(s) 82, 94, 97, 100, 374, 421, 660
FspBI CTAG 2 cut(s) 194, 1175
GlaI GCGC 1 cut(s) 511
GluI GCNGC 7 cut(s) 82, 94, 97, 100, 374, 421, 660
GsaI CCCAGC 2 cut(s) 346, 510
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 5 cut(s) 99, 376, 548, 576, 755
HapII CCGG 1 cut(s) 628
HgaI GACGC 2 cut(s) 73, 1104
HhaI GCGC 1 cut(s) 512
Hin1I GRCGYC 1 cut(s) 1115
Hin1II CATG 5 cut(s) 10, 268, 581, 658, 1271
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HincII GTYRAC 1 cut(s) 1279
HindII GTYRAC 1 cut(s) 1279
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 7 cut(s) 233, 589, 673, 959, 972, 1033, 1051
HpaII CCGG 1 cut(s) 628
HphI GGTGA 7 cut(s) 191, 325, 500, 719, 826, 1060, 1226
Hpy166II GTNNAC 2 cut(s) 1279, 1338
Hpy188I TCNGA 8 cut(s) 537, 826, 834, 848, 904, 958, 1120, 1162
Hpy188III TCNNGA 9 cut(s) 22, 157, 230, 602, 923, 963, 1037, 1247, 1268
Hpy8I GTNNAC 2 cut(s) 1279, 1338
Hpy99I CGWCG 3 cut(s) 41, 89, 1120
HpyAV CCTTC 7 cut(s) 65, 163, 740, 769, 811, 929, 1193
HpyCH4III ACNGT 3 cut(s) 37, 898, 990
HpyCH4IV ACGT 3 cut(s) 11, 168, 199
HpyF10VI GCNNNNNNNGC 6 cut(s) 90, 99, 105, 274, 665, 1084
HpyF3I CTNAG 2 cut(s) 825, 999
HpySE526I ACGT 3 cut(s) 11, 168, 199
Hsp92I GRCGYC 1 cut(s) 1115
Hsp92II CATG 5 cut(s) 10, 268, 581, 658, 1271
HspAI GCGC 1 cut(s) 510
Kzo9I GATC 4 cut(s) 18, 259, 315, 1243
LmnI GCTCC 2 cut(s) 784, 1143
Lsp1109I GCAGC 2 cut(s) 80, 432
LweI GCATC 1 cut(s) 895
MaeI CTAG 2 cut(s) 194, 1175
MaeII ACGT 3 cut(s) 11, 168, 199
MaeIII GTNAC 4 cut(s) 179, 292, 692, 757
MalI GATC 4 cut(s) 20, 261, 317, 1245
MboI GATC 4 cut(s) 18, 259, 315, 1243
MboII GAAGA 2 cut(s) 1175, 1283
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 1 cut(s) 79
MlsI TGGCCA 2 cut(s) 548, 576
MluCI AATT 5 cut(s) 46, 326, 564, 835, 1068
MluNI TGGCCA 2 cut(s) 548, 576
MlyI GAGTC 2 cut(s) 227, 953
MmeI TCCRAC 2 cut(s) 424, 1098
Mox20I TGGCCA 2 cut(s) 548, 576
MscI TGGCCA 2 cut(s) 548, 576
MseI TTAA 5 cut(s) 111, 366, 429, 552, 1254
Msp20I TGGCCA 2 cut(s) 548, 576
MspA1I CMGCKG 2 cut(s) 346, 1058
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 1 cut(s) 628
MspR9I CCNGG 6 cut(s) 129, 321, 629, 740, 752, 1142
MunI CAATTG 1 cut(s) 564
Mva1269I GAATGC 3 cut(s) 123, 811, 1189
MvaI CCWGG 5 cut(s) 129, 321, 740, 752, 1142
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 6 cut(s) 90, 99, 105, 274, 665, 1084
NciI CCSGG 1 cut(s) 629
NdeI CATATG 2 cut(s) 914, 1080
NdeII GATC 4 cut(s) 18, 259, 315, 1243
NlaIII CATG 5 cut(s) 10, 268, 581, 658, 1271
NlaIV GGNNCC 4 cut(s) 30, 780, 1172, 1245
NmeAIII GCCGAG 1 cut(s) 835
NmuCI GTSAC 3 cut(s) 179, 292, 757
NotI GCGGCCGC 1 cut(s) 97
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 2 cut(s) 44, 1197
PaeI GCATGC 1 cut(s) 268
PagI TCATGA 1 cut(s) 1267
PasI CCCWGGG 1 cut(s) 320
PctI GAATGC 3 cut(s) 123, 811, 1189
PfeI GAWTC 5 cut(s) 589, 673, 972, 1033, 1051
PkrI GCNGC 7 cut(s) 83, 95, 98, 101, 375, 422, 661
PleI GAGTC 2 cut(s) 227, 953
PpsI GAGTC 2 cut(s) 227, 953
PpuMI RGGWCCY 1 cut(s) 400
PshBI ATTAAT 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 5 cut(s) 127, 319, 738, 750, 1140
PspFI CCCAGC 2 cut(s) 342, 506
PspGI CCWGG 5 cut(s) 127, 319, 738, 750, 1140
PspN4I GGNNCC 4 cut(s) 30, 780, 1172, 1245
PspPI GGNCC 1 cut(s) 400
PspPPI RGGWCCY 1 cut(s) 400
PstI CTGCAG 1 cut(s) 1312
PsuI RGATCY 1 cut(s) 1243
PvuII CAGCTG 2 cut(s) 346, 1058
SaqAI TTAA 5 cut(s) 111, 366, 429, 552, 1254
SatI GCNGC 7 cut(s) 82, 94, 97, 100, 374, 421, 660
Sau3AI GATC 4 cut(s) 18, 259, 315, 1243
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 2 cut(s) 227, 953
ScrFI CCNGG 6 cut(s) 129, 321, 629, 740, 752, 1142
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 895
SfcI CTRYAG 1 cut(s) 1308
SfuI TTCGAA 2 cut(s) 44, 1197
SinI GGWCC 1 cut(s) 400
SmlI CTYRAG 3 cut(s) 365, 602, 1238
SmoI CTYRAG 3 cut(s) 365, 602, 1238
SphI GCATGC 1 cut(s) 268
Sse9I AATT 5 cut(s) 46, 326, 564, 835, 1068
SsiI CCGC 6 cut(s) 65, 82, 96, 100, 373, 659
SspMI CTAG 2 cut(s) 194, 1175
StyD4I CCNGG 6 cut(s) 127, 319, 627, 738, 750, 1140
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 3 cut(s) 37, 898, 990
TaiI ACGT 3 cut(s) 14, 171, 202
TaqI TCGA 4 cut(s) 44, 388, 685, 1197
TasI AATT 5 cut(s) 46, 326, 564, 835, 1068
TauI GCSGC 5 cut(s) 84, 99, 102, 376, 662
TfiI GAWTC 5 cut(s) 589, 673, 972, 1033, 1051
Tru1I TTAA 5 cut(s) 111, 366, 429, 552, 1254
Tru9I TTAA 5 cut(s) 111, 366, 429, 552, 1254
TscAI CASTG 3 cut(s) 243, 301, 995
TseFI GTSAC 3 cut(s) 179, 292, 757
TseI GCWGC 2 cut(s) 93, 420
Tsp45I GTSAC 3 cut(s) 179, 292, 757
TspDTI ATGAA 4 cut(s) 325, 1137, 1242, 1284
TspRI CASTG 3 cut(s) 243, 301, 995
Vha464I CTTAAG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 400
VspI ATTAAT 1 cut(s) 552
XagI CCTNNNNNAGG 1 cut(s) 1145
XceI RCATGY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XspI CTAG 2 cut(s) 194, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.