Rroxscaffold_4G00302460

GDP-L-galactose phosphorylase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
22840195 .. 22841472
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302460.1

Sequence Viewer

Length: 1278 bp
ATGCTGAAGATCAAGAAAGTTCCTACTGTGGTTTCTAATTACCAGAAAGATGAGGCAGATGAGGGGCGCCGAGTTGGGGTTTGTGGCCGCAACTGCCTTAACAAATGTTGCATTCCAGGAGCAAAACTTCCATTGTATGCTTTCAAGAAGCAAAACAACTCACTAGGTGATGAGAAGCAAGAGGCTCCCATTGCTTTTCTTGATTCATTAGTTCTTGGAGAGTGGGAGGATCGTATGAAGAAAGGCCTATTTCAATATGATGTCACTGCCTGCGAAACCAAGGTGATCCCGGGCCAGTTTGGCTTCATTGCGCAGCTCAATGAGGGCCGCCACCTTAAGAAGCGTCCAACCGAGTTTCGAGTTGACAAGGTCCTCCAACCTTTTGATGGCAACAAGTTCAACTTTACTAAAGTTGGCCAAGAAGAGGTTCTGTTCCAGTTTGAAGCTAGTGAAGATGGTGAAGTTCAGTTTCACCCTAACGCACCTATTGATGTTGAAAACTCTCCAAGCGTTGTTGCCATCAATGTAAGTCCAATTGAATATGGGCATGTGCTGTTGATTCCTCGTATTCTTGAGTCTTTGCCACAAAGAATTGATCGTGAGAGCTTCTTGCTTGCACTTCACATGGCGGCAGAAGCAGGGAGTCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTTCCACCATCAATCACCTTCACTTCCAGGCTTACTACTTGGCCTTAACCTTTCCCATTGAAGAGGCTCCTACCAAGAAAATAACCAGTTTGGATGTTGGGGTGAAGATCTCTGAGCTTCTGAGCTATCCTGTTAGAGGTCTAGTTTTTGAGGGTGGAAATACTCTGGAAGATTTGTCAAACTCTGTCTCTGATGCCTGCATTTGCCTTCAAGGGAACAACATTGCTTTCAATGTCCTCATATCCGACTGCGGAAAGCGGATCTTTCTCTTGCCACAGTGTTATGCTGAGAAACAAGCTCTTGGGGAAGTTAGGGCAGAGCTTCTGGATACTCAGGTGAATCCAGCTGTGTGGGAAATTAGTGGACATATGGTGTTAAAGAGGAAGAAGGACTATGATGAGGCATCTGATGAAAATGCTAGGAAGCTCCTTGCCGAGGTCTCTCTTTCTGAAGAGAGGTTCCAAGAGGTGAATGCTCTTATATTTGGAGCCACTGCTTGTGGTGGTGGTGATGGGAATGCAAATTCACTTGACGATCCAGATGTGAACCCTCGCTATTATGAAGAAGTCAGTGCCATTAACAAAAGCTCCCAGTAA

Protein Analysis

425

Amino Acids

47.22

Weight (kDa)

5.14

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPGP1_N PF26217 67 - 239 3.8e-76 GDPGP1-like, N-terminal domain
GDPGP1_C PF26216 246 - 393 4e-67 GDPGP1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 66
AciI CCGC 5 cut(s) 88, 328, 629, 933, 940
AclWI GGATC 4 cut(s) 237, 280, 950, 1211
AcoI YGGCCR 2 cut(s) 85, 415
AcsI RAATTY 1 cut(s) 1204
AcuI CTGAAG 2 cut(s) 26, 1152
AcyI GRCGYC 1 cut(s) 67
AdeI CACNNNGTG 1 cut(s) 167
AfiI CCNNNNNNNGG 5 cut(s) 76, 386, 424, 818, 1117
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 9 cut(s) 145, 254, 400, 443, 497, 539, 743, 893, 913
AjnI CCWGG 2 cut(s) 115, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
Alw26I GTCTC 2 cut(s) 874, 1126
AlwI GGATC 4 cut(s) 237, 280, 950, 1211
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 6 cut(s) 85, 244, 292, 325, 415, 723
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 1204
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 2 cut(s) 69, 313
AspS9I GGNCC 3 cut(s) 292, 325, 370
AsuC2I CCSGG 2 cut(s) 290, 291
AsuHPI GGTGA 9 cut(s) 179, 295, 464, 470, 689, 796, 1030, 1162, 1202
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 370
BaeI ACNNNNGTAYC 2 cut(s) 1002, 1035
BalI TGGCCA 1 cut(s) 417
BanI GGYRCC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 325
BccI CCATC 5 cut(s) 380, 449, 527, 698, 1187
BciT130I CCWGG 2 cut(s) 117, 710
BciVI GTATCC 1 cut(s) 1003
BcnI CCSGG 2 cut(s) 290, 291
BcoDI GTCTC 2 cut(s) 874, 1126
BfaI CTAG 4 cut(s) 164, 447, 824, 1101
BfoI RGCGCY 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 335
BfuI GTATCC 1 cut(s) 1003
BglI GCCNNNNNGGC 1 cut(s) 300
BglII AGATCT 1 cut(s) 789
BisI GCNGC 4 cut(s) 88, 314, 328, 630
BlsI GCNGC 4 cut(s) 89, 315, 329, 631
Bme1390I CCNGG 4 cut(s) 117, 290, 291, 710
Bme18I GGWCC 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 292, 325, 370
BmiI GGNNCC 5 cut(s) 68, 186, 750, 1142, 1171
BmrFI CCNGG 4 cut(s) 117, 290, 291, 710
BmrI ACTGGG 1 cut(s) 1267
BmsI GCATC 2 cut(s) 865, 1094
BmuI ACTGGG 1 cut(s) 1267
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 2 cut(s) 290, 291
BsaHI GRCGYC 1 cut(s) 67
BsaI GGTCTC 1 cut(s) 1126
BsaJI CCNNGG 3 cut(s) 279, 289, 1116
BsaXI ACNNNNNCTCC 1 cut(s) 1253
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 386, 424, 818, 1117
Bse1I ACTGG 4 cut(s) 295, 436, 768, 1273
Bse3DI GCAATG 3 cut(s) 189, 306, 903
BseBI CCWGG 2 cut(s) 117, 710
BseDI CCNNGG 3 cut(s) 279, 289, 1116
BseGI GGATG 1 cut(s) 781
BseLI CCNNNNNNNGG 5 cut(s) 76, 386, 424, 818, 1117
BseMI GCAATG 3 cut(s) 189, 306, 903
BseMII CTCAG 4 cut(s) 786, 794, 960, 1028
BseNI ACTGG 4 cut(s) 295, 436, 768, 1273
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 6 cut(s) 87, 246, 294, 327, 417, 725
BshNI GGYRCC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 5 cut(s) 76, 386, 424, 818, 1117
BsmAI GTCTC 2 cut(s) 874, 1126
BsmI GAATGC 3 cut(s) 111, 1159, 1204
BsnI GGCC 6 cut(s) 87, 246, 294, 327, 417, 725
Bso31I GGTCTC 1 cut(s) 1126
BsoBI CYCGRG 1 cut(s) 289
Bsp143I GATC 7 cut(s) 9, 229, 285, 595, 789, 942, 1216
BspACI CCGC 5 cut(s) 88, 328, 629, 933, 940
BspANI GGCC 6 cut(s) 87, 246, 294, 327, 417, 725
BspCNI CTCAG 4 cut(s) 787, 795, 961, 1027
BspLI GGNNCC 5 cut(s) 68, 186, 750, 1142, 1171
BspPI GGATC 4 cut(s) 237, 280, 950, 1211
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 1126
BsrDI GCAATG 3 cut(s) 189, 306, 903
BsrI ACTGG 4 cut(s) 295, 436, 768, 1273
BssECI CCNNGG 3 cut(s) 279, 289, 1116
BssMI GATC 7 cut(s) 9, 229, 285, 595, 789, 942, 1216
BssNI GRCGYC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 117, 710
Bst4CI ACNGT 2 cut(s) 28, 960
Bst6I CTCTTC 3 cut(s) 417, 738, 1128
BstACI GRCGYC 1 cut(s) 67
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 271, 615, 880
BstDEI CTNAG 4 cut(s) 795, 803, 969, 1014
BstENI CCTNNNNNAGG 2 cut(s) 816, 1115
BstF5I GGATG 1 cut(s) 781
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 2 cut(s) 69, 313
BstKTI GATC 7 cut(s) 12, 232, 288, 598, 792, 945, 1219
BstMAI GTCTC 2 cut(s) 874, 1126
BstMBI GATC 7 cut(s) 9, 229, 285, 595, 789, 942, 1216
BstMWI GCNNNNNNNGC 4 cut(s) 93, 191, 300, 635
BstNI CCWGG 2 cut(s) 117, 710
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 4 cut(s) 115, 288, 289, 708
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 2 cut(s) 789, 942
BstXI CCANNNNNNTGG 1 cut(s) 1032
BstYI RGATCY 2 cut(s) 789, 942
BsuI GTATCC 1 cut(s) 1003
BsuRI GGCC 6 cut(s) 87, 246, 294, 327, 417, 725
BtsCI GGATG 1 cut(s) 781
BtsI GCAGTG 2 cut(s) 264, 1173
BtsIMutI CAGTG 4 cut(s) 264, 965, 1173, 1258
Cac8I GCNNGC 3 cut(s) 271, 615, 880
CfoI GCGC 2 cut(s) 69, 313
Cfr13I GGNCC 3 cut(s) 292, 325, 370
Cfr9I CCCGGG 1 cut(s) 289
CseI GACGC 1 cut(s) 332
CviAII CATG 2 cut(s) 548, 625
DdeI CTNAG 4 cut(s) 795, 803, 969, 1014
DinI GGCGCC 1 cut(s) 68
DpnI GATC 7 cut(s) 11, 231, 287, 597, 791, 944, 1218
DpnII GATC 7 cut(s) 9, 229, 285, 595, 789, 942, 1216
DraIII CACNNNGTG 1 cut(s) 167
EaeI YGGCCR 2 cut(s) 85, 415
Eam1104I CTCTTC 3 cut(s) 417, 738, 1128
EarI CTCTTC 3 cut(s) 417, 738, 1128
Eco130I CCWWGG 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 1126
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 26, 1152
Eco88I CYCGRG 1 cut(s) 289
EcoNI CCTNNNNNAGG 2 cut(s) 816, 1115
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 115, 708
EcoT14I CCWWGG 1 cut(s) 279
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 551, 628
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 929, 961
FatI CATG 2 cut(s) 547, 624
FauNDI CATATG 1 cut(s) 1050
Fnu4HI GCNGC 4 cut(s) 88, 314, 328, 630
FokI GGATG 1 cut(s) 788
Fsp4HI GCNGC 4 cut(s) 88, 314, 328, 630
FspBI CTAG 4 cut(s) 164, 447, 824, 1101
FspI TGCGCA 1 cut(s) 312
GlaI GCGC 2 cut(s) 68, 312
GluI GCNGC 4 cut(s) 88, 314, 328, 630
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 6 cut(s) 87, 246, 294, 327, 417, 725
HapII CCGG 1 cut(s) 290
HgaI GACGC 1 cut(s) 332
HhaI GCGC 2 cut(s) 69, 313
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 2 cut(s) 551, 628
Hin6I GCGC 2 cut(s) 67, 311
HinP1I GCGC 2 cut(s) 67, 311
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 5 cut(s) 203, 559, 575, 643, 1021
HpaII CCGG 1 cut(s) 290
HphI GGTGA 9 cut(s) 179, 295, 464, 470, 689, 796, 1030, 1162, 1202
Hpy166II GTNNAC 3 cut(s) 364, 1046, 1228
Hpy188I TCNGA 7 cut(s) 656, 796, 804, 874, 928, 1090, 1132
Hpy188III TCNNGA 8 cut(s) 13, 145, 200, 572, 599, 848, 1007, 1220
Hpy8I GTNNAC 3 cut(s) 364, 1046, 1228
HpyAV CCTTC 3 cut(s) 710, 899, 1063
HpyCH4III ACNGT 2 cut(s) 28, 960
HpyCH4V TGCA 5 cut(s) 111, 617, 680, 882, 1202
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 191, 300, 635
HpyF3I CTNAG 4 cut(s) 795, 803, 969, 1014
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 551, 628
HspAI GCGC 2 cut(s) 67, 311
KasI GGCGCC 1 cut(s) 66
Kzo9I GATC 7 cut(s) 9, 229, 285, 595, 789, 942, 1216
LmnI GCTCC 6 cut(s) 119, 190, 754, 1113, 1169, 1274
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 2 cut(s) 865, 1094
MaeI CTAG 4 cut(s) 164, 447, 824, 1101
MaeIII GTNAC 2 cut(s) 262, 662
MalI GATC 7 cut(s) 11, 231, 287, 597, 791, 944, 1218
MboI GATC 7 cut(s) 9, 229, 285, 595, 789, 942, 1216
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 2 cut(s) 789, 942
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 5 cut(s) 37, 534, 591, 1038, 1204
MluNI TGGCCA 1 cut(s) 417
Mly113I GGCGCC 1 cut(s) 67
MlyI GAGTC 2 cut(s) 584, 652
MmeI TCCRAC 3 cut(s) 371, 400, 951
Mox20I TGGCCA 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 426
MscI TGGCCA 1 cut(s) 417
MseI TTAA 5 cut(s) 99, 336, 728, 1058, 1260
Msp20I TGGCCA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 1028
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 4 cut(s) 117, 290, 291, 710
MunI CAATTG 1 cut(s) 534
Mva1269I GAATGC 3 cut(s) 111, 1159, 1204
MvaI CCWGG 2 cut(s) 117, 710
MwoI GCNNNNNNNGC 4 cut(s) 93, 191, 300, 635
NarI GGCGCC 1 cut(s) 67
NciI CCSGG 2 cut(s) 290, 291
NdeI CATATG 1 cut(s) 1050
NdeII GATC 7 cut(s) 9, 229, 285, 595, 789, 942, 1216
NlaIII CATG 2 cut(s) 551, 628
NlaIV GGNNCC 5 cut(s) 68, 186, 750, 1142, 1171
NmeAIII GCCGAG 2 cut(s) 95, 1141
NmuCI GTSAC 1 cut(s) 262
NsbI TGCGCA 1 cut(s) 312
NspI RCATGY 1 cut(s) 551
PceI AGGCCT 1 cut(s) 246
PctI GAATGC 3 cut(s) 111, 1159, 1204
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 203, 559, 1021
PflFI GACNNNGTC 1 cut(s) 368
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 4 cut(s) 89, 315, 329, 631
PleI GAGTC 2 cut(s) 583, 651
PluTI GGCGCC 1 cut(s) 70
PpsI GAGTC 2 cut(s) 583, 651
PpuMI RGGWCCY 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 115, 708
PspGI CCWGG 2 cut(s) 115, 708
PspN4I GGNNCC 5 cut(s) 68, 186, 750, 1142, 1171
PspPI GGNCC 3 cut(s) 292, 325, 370
PspPPI RGGWCCY 1 cut(s) 370
PsuI RGATCY 2 cut(s) 789, 942
PsyI GACNNNGTC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 1028
SaqAI TTAA 5 cut(s) 99, 336, 728, 1058, 1260
SatI GCNGC 4 cut(s) 88, 314, 328, 630
Sau3AI GATC 7 cut(s) 9, 229, 285, 595, 789, 942, 1216
Sau96I GGNCC 3 cut(s) 292, 325, 370
SchI GAGTC 2 cut(s) 584, 652
ScrFI CCNGG 4 cut(s) 117, 290, 291, 710
SfaNI GCATC 2 cut(s) 865, 1094
SfoI GGCGCC 1 cut(s) 68
SinI GGWCC 1 cut(s) 370
SmaI CCCGGG 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 335, 572
SmoI CTYRAG 2 cut(s) 335, 572
Sse9I AATT 5 cut(s) 37, 534, 591, 1038, 1204
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 5 cut(s) 88, 328, 629, 933, 940
SspDI GGCGCC 1 cut(s) 66
SspMI CTAG 4 cut(s) 164, 447, 824, 1101
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 4 cut(s) 115, 288, 289, 708
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 28, 960
TaqI TCGA 1 cut(s) 358
TasI AATT 5 cut(s) 37, 534, 591, 1038, 1204
TauI GCSGC 3 cut(s) 90, 330, 632
TfiI GAWTC 3 cut(s) 203, 559, 1021
Tru1I TTAA 5 cut(s) 99, 336, 728, 1058, 1260
Tru9I TTAA 5 cut(s) 99, 336, 728, 1058, 1260
TscAI CASTG 4 cut(s) 271, 965, 1180, 1258
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 5 cut(s) 195, 251, 295, 1107, 1257
TspMI CCCGGG 1 cut(s) 289
TspRI CASTG 4 cut(s) 271, 965, 1180, 1258
Tth111I GACNNNGTC 1 cut(s) 368
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 370
XagI CCTNNNNNAGG 2 cut(s) 816, 1115
XapI RAATTY 1 cut(s) 1204
XceI RCATGY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmaI CCCGGG 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 4 cut(s) 164, 447, 824, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.