Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004733

Physical Location & Seq

Genomic Coordinates Forward (+)

33301343 .. 33304452

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0231100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTGATGGGAGTGCGCAATCAAGGTACGTGAAGCTGACCAGGGAACAAGAAGCCCCAACAGAGGATATCACCCCTGGAGAGCTCAACCAACCCATTGAAATTCCTCAGTTAAATGTTGAGAGGTGTGTGGAATGCGGGCAACCCCTGCCTGAAAGATACCAGCCCCCAGCTGATGAAGATTGGACAACTGGGATATGTGGCTGCACTCAAGATCCAGAGAGTTGCTGGACTGGACTTTTTTGCCCATGTGTGTTGTTTGGGCGTAACGTTGAAACAATACGAGAAGATATTCCCTGGAATAATGCCTGTGTTTGCCATGCTGTGTGTGTTGAAGGAGGAATTGCAGTTGCAGCAGCGACAGCATTCTTCCATGGTGTTGATCCTAAGACGTCAGTTCTCATCTGTGAGACATTGCTATTTGCCTGGTGGATGTGTGCAATCTACACTGGTCTGTTTAGGCAGTCATTGCAAAAGAAATATCATCTCAAGGATTCACCATGTGATCCTTGCATGGTGCACTGCTGCATGCACTGGTGTGCTTTGTGTCAAGAGCACAGGGAGATGAGGGGTCACTTATCTGATTCTTCAAGCATGGCAATGACTGTTGTTAACCCACCGCCAGTTCAAGAGATGAGCTCTAGTGAGAAAAAGGACGCTGCAGCTCCATCAGCAGAGTCTTCCGGTCAAGGAAACACCAATTCCAGTCAAGAAAACACCAATATGGAGCTGGCGCTGCAGCCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008905 GO:0008928 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0010471 GO:0010472 GO:0010473 GO:0010474 GO:0010475 GO:0016043 GO:0016051 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0016772 GO:0016779 GO:0019318 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042221 GO:0042364 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046527 GO:0046677 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070568 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080046 GO:0080048 GO:0098542 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

DUF4922

Protein Analysis

249

Amino Acids

27.45

Weight (kDa)

4.72

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	62 - 188	1.6e-27	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26850 AT5G55120
fragaria_vesca	FvH4_3g23310 FvH4_3g23310 FvH4_3g23310 FvH4_4g27370 FvH4_7g13380
malus_domestica	MD03G1195300.v1.1 MD11G1211800.v1.1
prunus_persica	Prupe.4G220800_v2.0.a1
pyrus_communis	pycom03g14760 pycom11g18690
rosa_chinensis	RchiOBHm_Chr1g0352701 RchiOBHm_Chr5g0041101
rosa_laevigata	RLG00000028319 RLG00000034024
rosa_multiflora	Rmu_co7960401.1_g000001 Rmu_sc0000095.1_g000002 Rmu_sc0042737.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039600 Rroxscaffold_4G00302460
rosa_rugosa	Rorug01G0231100 Rorug05G0189900
rosa_samantha	Rh1AG244200 Rh1BG214900 Rh1DG240900 Rh5AG275700 Rh5BG280400 Rh5CG312500 Rh5DG288700
rosa_wichuraiana	Rw5G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	395
Acc16I	TGCGCA	1 cut(s)	18
AciI	CCGC	2 cut(s)	138, 620
AclI	AACGTT	1 cut(s)	270
AclWI	GGATC	3 cut(s)	209, 377, 500
AcsI	RAATTY	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	5 cut(s)	101, 275, 335, 591, 629
AjnI	CCWGG	4 cut(s)	41, 76, 296, 425
AleI	CACNNNNGTG	1 cut(s)	537
AluBI	AGCT	6 cut(s)	37, 85, 173, 639, 665, 730
AluI	AGCT	6 cut(s)	37, 85, 173, 639, 665, 730
Alw21I	GWGCWC	4 cut(s)	87, 522, 558, 641
Alw26I	GTCTC	1 cut(s)	404
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	3 cut(s)	209, 377, 500
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	8 cut(s)	204, 353, 356, 525, 659, 662, 736, 739
ApoI	RAATTY	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	2 cut(s)	19, 736
AsuHPI	GGTGA	2 cut(s)	64, 489
BaeGI	GKGCMC	1 cut(s)	522
BanII	GRGCYC	2 cut(s)	87, 641
BbsI	GAAGAC	1 cut(s)	672
Bbv12I	GWGCWC	4 cut(s)	87, 522, 558, 641
BbvI	GCAGC	7 cut(s)	191, 365, 368, 512, 646, 674, 723
BccI	CCATC	2 cut(s)	2, 676
BciT130I	CCWGG	4 cut(s)	43, 78, 298, 427
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	2 cut(s)	660, 737
BfoI	RGCGCY	1 cut(s)	737
BisI	GCNGC	8 cut(s)	205, 354, 357, 526, 660, 663, 737, 740
BlsI	GCNGC	8 cut(s)	206, 355, 358, 527, 661, 664, 738, 741
Bme1390I	CCNGG	4 cut(s)	43, 78, 298, 427
BmrFI	CCNGG	4 cut(s)	43, 78, 298, 427
BmrI	ACTGGG	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	672
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpmI	CTGGAG	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	195, 473
BsaAI	YACGTR	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	392
BsaJI	CCNNGG	4 cut(s)	42, 76, 296, 373
BsaWI	WCCGGW	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	6 cut(s)	196, 238, 454, 539, 623, 705
Bse3DI	GCAATG	3 cut(s)	413, 467, 606
BseBI	CCWGG	4 cut(s)	43, 78, 298, 427
BseDI	CCNNGG	4 cut(s)	42, 76, 296, 373
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	3 cut(s)	413, 467, 606
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	6 cut(s)	196, 238, 454, 539, 623, 705
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	7 cut(s)	191, 365, 368, 512, 646, 674, 723
BseYI	CCCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	190
BsiHKAI	GWGCWC	4 cut(s)	87, 522, 558, 641
BsiSI	CCGG	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	404
BsmI	GAATGC	2 cut(s)	140, 365
Bsp1286I	GDGCHC	4 cut(s)	87, 522, 558, 641
Bsp143I	GATC	3 cut(s)	214, 382, 505
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	2 cut(s)	138, 620
BspCNI	CTCAG	1 cut(s)	121
BspMAI	CTGCAG	2 cut(s)	664, 741
BspPI	GGATC	3 cut(s)	209, 377, 500
BsrDI	GCAATG	3 cut(s)	413, 467, 606
BsrI	ACTGG	6 cut(s)	196, 238, 454, 539, 623, 705
BssECI	CCNNGG	4 cut(s)	42, 76, 296, 373
BssMI	GATC	3 cut(s)	214, 382, 505
BssNI	GRCGYC	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	4 cut(s)	43, 78, 298, 427
Bst4CI	ACNGT	1 cut(s)	607
BstACI	GRCGYC	1 cut(s)	392
BstAPI	GCANNNNNTGC	2 cut(s)	148, 469
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	3 cut(s)	140, 530, 732
BstDEI	CTNAG	2 cut(s)	108, 387
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	438
BstH2I	RGCGCY	1 cut(s)	737
BstHHI	GCGC	2 cut(s)	19, 736
BstKTI	GATC	3 cut(s)	217, 385, 508
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	214, 382, 505
BstMWI	GCNNNNNNNGC	6 cut(s)	148, 353, 362, 469, 671, 736
BstNI	CCWGG	4 cut(s)	43, 78, 298, 427
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	4 cut(s)	41, 76, 296, 425
BstSFI	CTRYAG	2 cut(s)	660, 737
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	7 cut(s)	191, 365, 368, 512, 646, 674, 723
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	3 cut(s)	447, 520, 532
Cac8I	GCNNGC	3 cut(s)	140, 530, 732
CfoI	GCGC	2 cut(s)	19, 736
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	7 cut(s)	249, 320, 374, 501, 514, 529, 595
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	108, 387
DpnI	GATC	3 cut(s)	216, 384, 507
DpnII	GATC	3 cut(s)	214, 382, 505
DraIII	CACNNNGTG	1 cut(s)	503
Ecl136II	GAGCTC	2 cut(s)	85, 639
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	2 cut(s)	87, 641
Eco32I	GATATC	1 cut(s)	70
Eco53kI	GAGCTC	2 cut(s)	85, 639
EcoICRI	GAGCTC	2 cut(s)	85, 639
EcoRII	CCWGG	4 cut(s)	41, 76, 296, 425
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	2 cut(s)	87, 641
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	7 cut(s)	252, 323, 377, 504, 517, 532, 598
FaiI	YATR	9 cut(s)	199, 250, 321, 375, 502, 515, 530, 596, 725
FatI	CATG	7 cut(s)	248, 319, 373, 500, 513, 528, 594
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	8 cut(s)	205, 354, 357, 526, 660, 663, 737, 740
FokI	GGATG	1 cut(s)	445
FriOI	GRGCYC	2 cut(s)	87, 641
Fsp4HI	GCNGC	8 cut(s)	205, 354, 357, 526, 660, 663, 737, 740
FspBI	CTAG	1 cut(s)	642
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	2 cut(s)	18, 735
GluI	GCNGC	8 cut(s)	205, 354, 357, 526, 660, 663, 737, 740
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	737
HapII	CCGG	1 cut(s)	684
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	2 cut(s)	19, 736
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	7 cut(s)	252, 323, 377, 504, 517, 532, 598
Hin6I	GCGC	2 cut(s)	17, 734
HinP1I	GCGC	2 cut(s)	17, 734
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	3 cut(s)	494, 584, 677
HpaI	GTTAAC	1 cut(s)	613
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	2 cut(s)	64, 489
Hpy166II	GTNNAC	2 cut(s)	520, 613
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	5 cut(s)	212, 218, 551, 629, 710
Hpy8I	GTNNAC	2 cut(s)	520, 613
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	3 cut(s)	30, 270, 392
HpyF10VI	GCNNNNNNNGC	6 cut(s)	148, 353, 362, 469, 671, 736
HpyF3I	CTNAG	2 cut(s)	108, 387
HpySE526I	ACGT	3 cut(s)	30, 270, 392
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	7 cut(s)	252, 323, 377, 504, 517, 532, 598
HspAI	GCGC	2 cut(s)	17, 734
KspAI	GTTAAC	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	214, 382, 505
LmnI	GCTCC	2 cut(s)	670, 727
Lsp1109I	GCAGC	7 cut(s)	191, 365, 368, 512, 646, 674, 723
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	3 cut(s)	30, 270, 392
MaeIII	GTNAC	2 cut(s)	266, 572
MalI	GATC	3 cut(s)	216, 384, 507
MboI	GATC	3 cut(s)	214, 382, 505
MboII	GAAGA	5 cut(s)	191, 299, 361, 579, 672
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	4 cut(s)	87, 522, 558, 641
MluCI	AATT	3 cut(s)	102, 342, 700
MlyI	GAGTC	1 cut(s)	686
MnlI	CCTC	5 cut(s)	58, 117, 117, 332, 561
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	113, 612
MslI	CAYNNNNRTG	3 cut(s)	537, 599, 722
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	4 cut(s)	43, 78, 298, 427
Mva1269I	GAATGC	2 cut(s)	140, 365
MvaI	CCWGG	4 cut(s)	43, 78, 298, 427
MwoI	GCNNNNNNNGC	6 cut(s)	148, 353, 362, 469, 671, 736
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	214, 382, 505
NlaIII	CATG	7 cut(s)	252, 323, 377, 504, 517, 532, 598
NmuCI	GTSAC	1 cut(s)	572
NsbI	TGCGCA	1 cut(s)	18
NspI	RCATGY	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	532
PctI	GAATGC	2 cut(s)	140, 365
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	494, 584
PkrI	GCNGC	8 cut(s)	206, 355, 358, 527, 661, 664, 738, 741
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
Ppu21I	YACGTR	1 cut(s)	31
Psp124BI	GAGCTC	2 cut(s)	87, 641
Psp1406I	AACGTT	1 cut(s)	270
Psp6I	CCWGG	4 cut(s)	41, 76, 296, 425
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	4 cut(s)	41, 76, 296, 425
PstI	CTGCAG	2 cut(s)	664, 741
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	3 cut(s)	537, 599, 722
SacI	GAGCTC	2 cut(s)	87, 641
SaqAI	TTAA	2 cut(s)	113, 612
SatI	GCNGC	8 cut(s)	205, 354, 357, 526, 660, 663, 737, 740
Sau3AI	GATC	3 cut(s)	214, 382, 505
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	4 cut(s)	43, 78, 298, 427
SduI	GDGCHC	4 cut(s)	87, 522, 558, 641
SfcI	CTRYAG	2 cut(s)	660, 737
SmiMI	CAYNNNNRTG	3 cut(s)	537, 599, 722
SmlI	CTYRAG	2 cut(s)	210, 488
SmoI	CTYRAG	2 cut(s)	210, 488
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	3 cut(s)	102, 342, 700
SsiI	CCGC	2 cut(s)	138, 620
SspMI	CTAG	1 cut(s)	642
SstI	GAGCTC	2 cut(s)	87, 641
StyD4I	CCNGG	4 cut(s)	41, 76, 296, 425
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	3 cut(s)	33, 273, 395
TasI	AATT	3 cut(s)	102, 342, 700
TfiI	GAWTC	2 cut(s)	494, 584
Tru1I	TTAA	2 cut(s)	113, 612
Tru9I	TTAA	2 cut(s)	113, 612
TscAI	CASTG	3 cut(s)	454, 527, 539
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	8 cut(s)	204, 353, 356, 525, 659, 662, 736, 739
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	3 cut(s)	454, 527, 539
VneI	GTGCAC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	2 cut(s)	225, 727
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	642
ZraI	GACGTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.