Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7960401.1

Orthogroup ID

OG0004733

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 485

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7960401.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 328 bp

atggcttactacttggctgtaacctttcccattgaaaaggctcctactaagaaaataaccactttggatgttggggtgaagatctctgagcttctgaactatcctgttagaggtctagttcttgagggtggaaatactctggaagatttgtcaaactctgtctctgatgcctgcatttgccttcaagagaacaacattccttacaatgtcctcatatctgactgtggaaagcggatctttctcttgccacagtgttatgctgagaaacaagctcttggggaagttagggcagagcttctggatactcaggtgaatccagctgtgtggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008905 GO:0008928 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0010471 GO:0010472 GO:0010473 GO:0010474 GO:0010475 GO:0016043 GO:0016051 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0016772 GO:0016779 GO:0019318 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042221 GO:0042364 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046527 GO:0046677 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070568 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080046 GO:0080048 GO:0098542 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

DUF4922

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

4.68

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26850 AT5G55120
fragaria_vesca	FvH4_3g23310 FvH4_3g23310 FvH4_3g23310 FvH4_4g27370 FvH4_7g13380
malus_domestica	MD03G1195300.v1.1 MD11G1211800.v1.1
prunus_persica	Prupe.4G220800_v2.0.a1
pyrus_communis	pycom03g14760 pycom11g18690
rosa_chinensis	RchiOBHm_Chr1g0352701 RchiOBHm_Chr5g0041101
rosa_laevigata	RLG00000028319 RLG00000034024
rosa_multiflora	Rmu_co7960401.1_g000001 Rmu_sc0000095.1_g000002 Rmu_sc0042737.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039600 Rroxscaffold_4G00302460
rosa_rugosa	Rorug01G0231100 Rorug05G0189900
rosa_samantha	Rh1AG244200 Rh1BG214900 Rh1DG240900 Rh5AG275700 Rh5BG280400 Rh5CG312500 Rh5DG288700
rosa_wichuraiana	Rw5G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	35, 185
AluBI	AGCT	4 cut(s)	91, 272, 295, 320
AluI	AGCT	4 cut(s)	91, 272, 295, 320
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	88, 322
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
BciVI	GTATCC	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	3 cut(s)	78, 252, 320
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	81, 234
BspACI	CCGC	1 cut(s)	232
BspCNI	CTCAG	3 cut(s)	79, 253, 319
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	242
BssMI	GATC	2 cut(s)	81, 234
Bst4CI	ACNGT	2 cut(s)	224, 252
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	4 cut(s)	48, 87, 261, 306
BstENI	CCTNNNNNAGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	84, 237
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	81, 234
BstX2I	RGATCY	2 cut(s)	81, 234
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	2 cut(s)	81, 234
BsuI	GTATCC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	172
CviJI	RGCY	7 cut(s)	5, 17, 41, 91, 272, 295, 320
CviKI_1	RGCY	7 cut(s)	5, 17, 41, 91, 272, 295, 320
DdeI	CTNAG	4 cut(s)	48, 87, 261, 306
DpnI	GATC	2 cut(s)	83, 236
DpnII	GATC	2 cut(s)	81, 234
EcoNI	CCTNNNNNAGG	1 cut(s)	108
FaiI	YATR	2 cut(s)	215, 258
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FokI	GGATG	1 cut(s)	80
FspBI	CTAG	1 cut(s)	116
HinfI	GANTC	1 cut(s)	313
HphI	GGTGA	2 cut(s)	88, 322
Hpy188I	TCNGA	4 cut(s)	88, 96, 166, 220
Hpy188III	TCNNGA	4 cut(s)	122, 140, 185, 299
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	224, 252
HpyCH4V	TGCA	1 cut(s)	174
HpyF3I	CTNAG	4 cut(s)	48, 87, 261, 306
Kzo9I	GATC	2 cut(s)	81, 234
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	5 cut(s)	117, 125, 184, 284, 293
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	83, 236
MboI	GATC	2 cut(s)	81, 234
MboII	GAAGA	2 cut(s)	91, 155
MflI	RGATCY	2 cut(s)	81, 234
MnlI	CCTC	3 cut(s)	104, 118, 221
MspA1I	CMGCKG	1 cut(s)	320
NdeII	GATC	2 cut(s)	81, 234
NlaIV	GGNNCC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	42
PsuI	RGATCY	2 cut(s)	81, 234
PvuII	CAGCTG	1 cut(s)	320
Sau3AI	GATC	2 cut(s)	81, 234
SetI	ASST	7 cut(s)	26, 93, 115, 274, 297, 312, 322
SfaNI	GCATC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	224, 252
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	257
TspRI	CASTG	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	108
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.