FvH4_7g13380

GDP-L-galactose phosphorylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
12018322 .. 12019824
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13380.t1

Sequence Viewer

Length: 1236 bp
ATGATGATGAAGATCAAGAAAGTTCCTACTGTGGTTTCTAATTACCAGAATGATGAGGCGGATGAGGGGCGCCGAGTTGGGGGTTGCGGCCGCAATTGCCTTAACAAATGTTGCCTTCCAGGAGCAAAACTTCCATTGTATGCTTTCAAGAAGCGAGAAAACTCACCTGGTGATGAGAAGAAACAAGAGGCTCCTGTTGCTTTTCTTGACTCATTGGTTCTTGGAGAGTGGGATGATCGTATGAAGAAAGGCCTGTTTCGATACGACGTCACCGCCTGTGAAACCAAGATGATCCCGGGCCAGTTTGGCTTCATTGCTCAACTGAATGAGGGTCGCCACCTCAAGAAGAGACCAACCGAATTTCGAGTTGACAAGGTCCTCCAACCTTTTGATGGATCCAAGTTCAACTTCAGTAAAGTTGGCCAAGAAGAAGTTTTGTTCCAGTTTGAAGCGAGTGAAGATGGTGAAGTTCAGTTTCACCCTAATGCACCTATTGATATAGCAACATCTCCTAGCGTTGTTGCCATCAATGTCAGTCCAATTGAATATGGGCATGTGTTGTTGATTCCTCGTATTCTCGAGTCTTTGCCACAAAGGATTGATCGTGAGAGCTTCTTGCTTGCACTTCACATGGCGGCAGAAGCAGGGAGTCCTTACTTCCGATTAGGTTACAACAGCTTGGGTGCATTTGCTACCATCAATCACCTTCATTTCCAGGCTTACTACTTGGCCTTAACCTTTCCCATAGAAAAGGCTCCTACCAATAAGATAACCAGTTTGGATGTTGGGGTGAAGATCTCTGAGCTTGTGAACTATCCTGTTAGAGGTCTAGTTTTCGAGGGTGGAAATACTCTGGAAGATTTGTCAAACTCTGTCTCGGATGCCTGCATTTGCCTTCAAGAGAACAACATTGCTTACAATGTCCTCATATCCGACTTCGGAAATCGGATCTTTCTCTTGCCACAGTGTTATGCTGAGAAACAAGCTCTTGGGGAAGTTAGGGCAGAGCTTCTGGATACTCAGGTGAATCCAGCTGTGTGGGAAATTAGTGGACATATGGTGTTGAAGAGGAAGAAGGACTATGATGAGGCATCTGATGAAAATGCTTGGAAGCTCCTTGCCGAGGTCTCTCTATCGGAAGAGAGGTTCAAAGAGGTGAATGCTCTTATAATTGGAGCCATTGCTTATGGTGGTGATCCAGATGTGAAGCCTCGCCCCCATGAAAGAAGTCATTGA

Protein Analysis

412

Amino Acids

45.99

Weight (kDa)

5.62

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPGP1_N PF26217 69 - 241 7.7e-75 GDPGP1-like, N-terminal domain
GDPGP1_C PF26216 248 - 394 1.4e-67 GDPGP1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1169
AatII GACGTC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 69
AciI CCGC 5 cut(s) 59, 87, 91, 273, 635
AclWI GGATC 5 cut(s) 286, 390, 403, 956, 1190
AcoI YGGCCR 2 cut(s) 88, 421
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 394
AcyI GRCGYC 2 cut(s) 70, 267
AdeI CACNNNGTG 1 cut(s) 170
AfiI CCNNNNNNNGG 4 cut(s) 79, 392, 824, 1123
AgsI TTSAA 7 cut(s) 148, 406, 449, 545, 899, 1066, 1150
AjnI CCWGG 3 cut(s) 118, 166, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AloI GAACNNNNNNTCC 2 cut(s) 1130, 1162
AluBI AGCT 7 cut(s) 612, 678, 805, 986, 1009, 1034, 1114
AluI AGCT 7 cut(s) 612, 678, 805, 986, 1009, 1034, 1114
Alw26I GTCTC 3 cut(s) 343, 880, 1132
AlwI GGATC 5 cut(s) 286, 390, 403, 956, 1190
Ama87I CYCGRG 2 cut(s) 295, 578
AoxI GGCC 5 cut(s) 88, 250, 298, 421, 729
ApoI RAATTY 1 cut(s) 359
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 298, 376
AsuC2I CCSGG 2 cut(s) 296, 297
AvaI CYCGRG 2 cut(s) 295, 578
AvaII GGWCC 1 cut(s) 376
BaeI ACNNNNGTAYC 2 cut(s) 1008, 1041
BalI TGGCCA 1 cut(s) 423
BamHI GGATCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 69
BccI CCATC 4 cut(s) 386, 455, 533, 704
BciT130I CCWGG 3 cut(s) 120, 168, 716
BciVI GTATCC 1 cut(s) 1009
BcnI CCSGG 2 cut(s) 296, 297
BcoDI GTCTC 3 cut(s) 343, 880, 1132
BfaI CTAG 2 cut(s) 513, 830
BfoI RGCGCY 1 cut(s) 73
BfuI GTATCC 1 cut(s) 1009
BglI GCCNNNNNGGC 1 cut(s) 306
BglII AGATCT 1 cut(s) 795
BisI GCNGC 3 cut(s) 88, 91, 636
BlsI GCNGC 3 cut(s) 89, 92, 637
Bme1390I CCNGG 5 cut(s) 120, 168, 296, 297, 716
Bme18I GGWCC 1 cut(s) 376
BmeT110I CYCGRG 2 cut(s) 295, 578
BmgT120I GGNCC 2 cut(s) 298, 376
BmiI GGNNCC 5 cut(s) 71, 192, 397, 756, 1177
BmrFI CCNGG 5 cut(s) 120, 168, 296, 297, 716
BmsI GCATC 2 cut(s) 871, 1100
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 296, 297
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 2 cut(s) 70, 267
BsaI GGTCTC 2 cut(s) 343, 1132
BsaJI CCNNGG 2 cut(s) 295, 1122
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 392, 824, 1123
Bse1I ACTGG 3 cut(s) 301, 442, 774
Bse3DI GCAATG 3 cut(s) 312, 909, 1179
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 3 cut(s) 120, 168, 716
BseDI CCNNGG 2 cut(s) 295, 1122
BseGI GGATG 4 cut(s) 67, 238, 787, 886
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 4 cut(s) 79, 392, 824, 1123
BseMI GCAATG 3 cut(s) 312, 909, 1179
BseMII CTCAG 3 cut(s) 792, 966, 1034
BseNI ACTGG 3 cut(s) 301, 442, 774
BseX3I CGGCCG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 5 cut(s) 90, 252, 300, 423, 731
BshNI GGYRCC 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 91
BsiHKCI CYCGRG 2 cut(s) 295, 578
BsiSI CCGG 1 cut(s) 296
BslI CCNNNNNNNGG 4 cut(s) 79, 392, 824, 1123
BsmAI GTCTC 3 cut(s) 343, 880, 1132
BsmI GAATGC 1 cut(s) 1165
BsnI GGCC 5 cut(s) 90, 252, 300, 423, 731
Bso31I GGTCTC 2 cut(s) 343, 1132
BsoBI CYCGRG 2 cut(s) 295, 578
Bsp143I GATC 8 cut(s) 12, 235, 291, 395, 601, 795, 948, 1195
BspACI CCGC 5 cut(s) 59, 87, 91, 273, 635
BspANI GGCC 5 cut(s) 90, 252, 300, 423, 731
BspCNI CTCAG 3 cut(s) 793, 967, 1033
BspLI GGNNCC 5 cut(s) 71, 192, 397, 756, 1177
BspPI GGATC 5 cut(s) 286, 390, 403, 956, 1190
BspT107I GGYRCC 1 cut(s) 69
BspTNI GGTCTC 2 cut(s) 343, 1132
BsrDI GCAATG 3 cut(s) 312, 909, 1179
BsrI ACTGG 3 cut(s) 301, 442, 774
BssECI CCNNGG 2 cut(s) 295, 1122
BssMI GATC 8 cut(s) 12, 235, 291, 395, 601, 795, 948, 1195
BssNI GRCGYC 2 cut(s) 70, 267
Bst2UI CCWGG 3 cut(s) 120, 168, 716
Bst4CI ACNGT 2 cut(s) 31, 966
Bst6I CTCTTC 3 cut(s) 341, 1061, 1134
BstACI GRCGYC 2 cut(s) 70, 267
BstC8I GCNNGC 2 cut(s) 621, 886
BstDEI CTNAG 3 cut(s) 801, 975, 1020
BstENI CCTNNNNNAGG 2 cut(s) 822, 1121
BstF5I GGATG 4 cut(s) 67, 238, 787, 886
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 8 cut(s) 15, 238, 294, 398, 604, 798, 951, 1198
BstMAI GTCTC 3 cut(s) 343, 880, 1132
BstMBI GATC 8 cut(s) 12, 235, 291, 395, 601, 795, 948, 1195
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 4 cut(s) 96, 197, 306, 641
BstNI CCWGG 3 cut(s) 120, 168, 716
BstNSI RCATGY 1 cut(s) 557
BstSCI CCNGG 5 cut(s) 118, 166, 294, 295, 714
BstX2I RGATCY 3 cut(s) 395, 795, 948
BstXI CCANNNNNNTGG 1 cut(s) 1038
BstYI RGATCY 3 cut(s) 395, 795, 948
BstZI CGGCCG 1 cut(s) 88
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 5 cut(s) 90, 252, 300, 423, 731
BtsCI GGATG 4 cut(s) 67, 238, 787, 886
BtsIMutI CAGTG 1 cut(s) 971
Cac8I GCNNGC 2 cut(s) 621, 886
CciNI GCGGCCGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 2 cut(s) 298, 376
Cfr9I CCCGGG 1 cut(s) 295
CsiI ACCWGGT 1 cut(s) 166
CviAII CATG 3 cut(s) 554, 631, 1220
DdeI CTNAG 3 cut(s) 801, 975, 1020
DinI GGCGCC 1 cut(s) 71
DpnI GATC 8 cut(s) 14, 237, 293, 397, 603, 797, 950, 1197
DpnII GATC 8 cut(s) 12, 235, 291, 395, 601, 795, 948, 1195
DraIII CACNNNGTG 1 cut(s) 170
EaeI YGGCCR 2 cut(s) 88, 421
EagI CGGCCG 1 cut(s) 88
Eam1104I CTCTTC 3 cut(s) 341, 1061, 1134
EarI CTCTTC 3 cut(s) 341, 1061, 1134
EciI GGCGGA 1 cut(s) 74
EclXI CGGCCG 1 cut(s) 88
Eco147I AGGCCT 1 cut(s) 252
Eco31I GGTCTC 2 cut(s) 343, 1132
Eco47I GGWCC 1 cut(s) 376
Eco52I CGGCCG 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 394
Eco88I CYCGRG 2 cut(s) 295, 578
EcoNI CCTNNNNNAGG 2 cut(s) 822, 1121
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 3 cut(s) 118, 166, 714
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
FaeI CATG 3 cut(s) 557, 634, 1223
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FatI CATG 3 cut(s) 553, 630, 1219
FauNDI CATATG 1 cut(s) 1056
Fnu4HI GCNGC 3 cut(s) 88, 91, 636
FokI GGATG 4 cut(s) 74, 245, 794, 893
Fsp4HI GCNGC 3 cut(s) 88, 91, 636
FspBI CTAG 2 cut(s) 513, 830
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 88, 91, 636
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 5 cut(s) 90, 252, 300, 423, 731
HapII CCGG 1 cut(s) 296
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 2 cut(s) 70, 267
Hin1II CATG 3 cut(s) 557, 634, 1223
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 5 cut(s) 209, 565, 581, 649, 1027
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 370, 811, 1052
Hpy188I TCNGA 8 cut(s) 662, 802, 880, 934, 941, 948, 1096, 1138
Hpy8I GTNNAC 3 cut(s) 370, 811, 1052
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 4 cut(s) 125, 716, 905, 1069
HpyCH4III ACNGT 2 cut(s) 31, 966
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 4 cut(s) 488, 623, 686, 888
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 197, 306, 641
HpyF3I CTNAG 3 cut(s) 801, 975, 1020
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 2 cut(s) 70, 267
Hsp92II CATG 3 cut(s) 557, 634, 1223
HspAI GCGC 1 cut(s) 70
KasI GGCGCC 1 cut(s) 69
Kzo9I GATC 8 cut(s) 12, 235, 291, 395, 601, 795, 948, 1195
LmnI GCTCC 5 cut(s) 122, 196, 760, 1119, 1175
LweI GCATC 2 cut(s) 871, 1100
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 2 cut(s) 513, 830
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 268, 668
MalI GATC 8 cut(s) 14, 237, 293, 397, 603, 797, 950, 1197
MboI GATC 8 cut(s) 12, 235, 291, 395, 601, 795, 948, 1195
MfeI CAATTG 2 cut(s) 94, 540
MflI RGATCY 3 cut(s) 395, 795, 948
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 6 cut(s) 40, 94, 359, 540, 1044, 1170
MluNI TGGCCA 1 cut(s) 423
Mly113I GGCGCC 1 cut(s) 70
MlyI GAGTC 3 cut(s) 203, 590, 658
MmeI TCCRAC 2 cut(s) 406, 957
Mox20I TGGCCA 1 cut(s) 423
MscI TGGCCA 1 cut(s) 423
MseI TTAA 2 cut(s) 102, 734
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 5 cut(s) 120, 168, 296, 297, 716
MunI CAATTG 2 cut(s) 94, 540
Mva1269I GAATGC 1 cut(s) 1165
MvaI CCWGG 3 cut(s) 120, 168, 716
MwoI GCNNNNNNNGC 4 cut(s) 96, 197, 306, 641
NarI GGCGCC 1 cut(s) 70
NciI CCSGG 2 cut(s) 296, 297
NdeI CATATG 1 cut(s) 1056
NdeII GATC 8 cut(s) 12, 235, 291, 395, 601, 795, 948, 1195
NlaIII CATG 3 cut(s) 557, 634, 1223
NlaIV GGNNCC 5 cut(s) 71, 192, 397, 756, 1177
NmeAIII GCCGAG 2 cut(s) 98, 1147
NmuCI GTSAC 1 cut(s) 268
NotI GCGGCCGC 1 cut(s) 88
NspI RCATGY 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 578
PceI AGGCCT 1 cut(s) 252
PctI GAATGC 1 cut(s) 1165
PfeI GAWTC 2 cut(s) 565, 1027
PflFI GACNNNGTC 1 cut(s) 374
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 3 cut(s) 89, 92, 637
PleI GAGTC 3 cut(s) 203, 589, 657
PluTI GGCGCC 1 cut(s) 73
PpsI GAGTC 3 cut(s) 203, 589, 657
PpuMI RGGWCCY 1 cut(s) 376
PsiI TTATAA 1 cut(s) 1169
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 3 cut(s) 118, 166, 714
PspGI CCWGG 3 cut(s) 118, 166, 714
PspN4I GGNNCC 5 cut(s) 71, 192, 397, 756, 1177
PspPI GGNCC 2 cut(s) 298, 376
PspPPI RGGWCCY 1 cut(s) 376
PsuI RGATCY 3 cut(s) 395, 795, 948
PsyI GACNNNGTC 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 1034
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 2 cut(s) 102, 734
SatI GCNGC 3 cut(s) 88, 91, 636
Sau3AI GATC 8 cut(s) 12, 235, 291, 395, 601, 795, 948, 1195
Sau96I GGNCC 2 cut(s) 298, 376
SchI GAGTC 3 cut(s) 203, 590, 658
ScrFI CCNGG 5 cut(s) 120, 168, 296, 297, 716
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 2 cut(s) 871, 1100
SfoI GGCGCC 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 578
SinI GGWCC 1 cut(s) 376
SlaI CTCGAG 1 cut(s) 578
SmaI CCCGGG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 341, 578
SmoI CTYRAG 2 cut(s) 341, 578
Sse9I AATT 6 cut(s) 40, 94, 359, 540, 1044, 1170
SseBI AGGCCT 1 cut(s) 252
SsiI CCGC 5 cut(s) 59, 87, 91, 273, 635
SspDI GGCGCC 1 cut(s) 69
SspMI CTAG 2 cut(s) 513, 830
StuI AGGCCT 1 cut(s) 252
StyD4I CCNGG 5 cut(s) 118, 166, 294, 295, 714
TaaI ACNGT 2 cut(s) 31, 966
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 259, 364, 579, 837
TasI AATT 6 cut(s) 40, 94, 359, 540, 1044, 1170
TauI GCSGC 3 cut(s) 90, 93, 638
TfiI GAWTC 2 cut(s) 565, 1027
Tru1I TTAA 2 cut(s) 102, 734
Tru9I TTAA 2 cut(s) 102, 734
TscAI CASTG 1 cut(s) 971
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 6 cut(s) 23, 257, 301, 698, 1113, 1236
TspMI CCCGGG 1 cut(s) 295
TspRI CASTG 1 cut(s) 971
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 376
XagI CCTNNNNNAGG 2 cut(s) 822, 1121
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 578
XmaI CCCGGG 1 cut(s) 295
XspI CTAG 2 cut(s) 513, 830
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.