pycom03g14760

GDP-L-galactose phosphorylase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
16067887 .. 16070075
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g14760.3

Sequence Viewer

Length: 1287 bp
ATGAGCATGACTTTGAGGATCAAGAGGGTTCCCACCGTCGTTTCGAATTACCAGAAAGATGAGGCCGAGGAAGGTGCCCGCCGCGTCGGGGGTTGTGGCCACAACTGCCTTAACCAGTGTTGCATTCCAGGTGCAAAACTTCCATTGTATGCCTTCAAGAAGCTGAACGTGAATGATGGTGACACGGGTTTGCTCGGACATGAGAAAAGAGAGCCTCCCGTTGCATTTCTTGACTCACTGCTTCTCGGGGAGGTGATCCCAGGGCAATTTGGTTTCATAGCCCAGCTGAATGAGGGTCGCCATCTTAAGAAGAGGCCAACTGAGTTTCGAGTTGATAAGGTCCTCCAGCCCTTTGATTGCAGCAAGTTTAACTTCACTAAAGTTGGACAAGAGGAGGTTCTGTTCCAGTTTGAAGCCAGCGAAGATGGTGAAGTTCAGTTTTTCCCCAGCGCACCCATTGATGTTGAAAGTTCGCCAAGCGTTGTGGCCATTAATGTCAGTCCGATTGAATACGGCCATGTGCTGTTGATTCCTCGTATTCTTGAGCGATTGCCGCAAAGGATTGACCGGGAAAGCTTCTTGCTTGCACTTCACATGGCGACTGAAGCAGGGAATCCTTACTTTCGATTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAATCACCTTCACTTCCAGGCTTACTACCTGGCCGTAACCTTTCCCATTGAGAAGGCTCCTACCAAAAAAATAGCCACTTTGAATGCCGCGGTGAAGGTCTCTGAGCTTCTGAATTATCCAGTCAGAGGTCTTGTGTTTGAGGGTGGAAATACTCTGCAAGATTTGTCAAACACCGTCTCTGATGCCTGCATATGCCTTCAAGAGAACAACATACCTTACAATGTCCTTATCTCTGACTCTGGAAAGCGAATATTTCTCATGCCACAGTGTTATGCTGAGAAACAAGCTCTTGGGGAAGTGAGAGCAGAGATTCTGGATACACAGGTGAATCCAGCTGTGTGGGAAATTAGTGGGCATATGGTGCTAAAGAGGAAAAAGGACTACGATGAGGCATCGGATGAAAATGCTTGGAAGCTCCTGGCAGAGGTCTCCCTTTCTGAAGAGAGGTTCCAAGAAGTGAATGCTCTTATTTTCGAAGGTATTGCTTCGGATGATAACGGGAATGAAAACTTGCTCGAGGATCCAGAAGTTAAGCCTCGTTCTCATGAAGAAGTCAACACCATCAACAAAAGAGTGCATTGTTCTGCAGTAAATGAGCAGATTTGTCGGTTGTTTACAATGTGA

Protein Analysis

429

Amino Acids

47.91

Weight (kDa)

5.31

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 2 cut(s) 84, 752
AciI CCGC 5 cut(s) 79, 82, 554, 750, 752
AclWI GGATC 4 cut(s) 26, 250, 1178, 1191
AcoI YGGCCR 4 cut(s) 97, 486, 514, 693
AcuI CTGAAG 2 cut(s) 624, 1122
AfiI CCNNNNNNNGG 3 cut(s) 88, 788, 1087
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 6 cut(s) 157, 413, 467, 509, 745, 863
AjnI CCWGG 5 cut(s) 127, 259, 678, 690, 1080
AloI GAACNNNNNNTCC 2 cut(s) 386, 418
AluBI AGCT 8 cut(s) 163, 286, 576, 642, 769, 950, 998, 1078
AluI AGCT 8 cut(s) 163, 286, 576, 642, 769, 950, 998, 1078
Alw26I GTCTC 3 cut(s) 766, 844, 1096
AlwI GGATC 4 cut(s) 26, 250, 1178, 1191
Ama87I CYCGRG 2 cut(s) 245, 1178
AoxI GGCC 6 cut(s) 63, 97, 314, 486, 514, 693
ApeKI GCWGC 1 cut(s) 360
AseI ATTAAT 1 cut(s) 492
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 6 cut(s) 191, 265, 440, 659, 766, 1000
AsuII TTCGAA 2 cut(s) 44, 1137
AvaI CYCGRG 2 cut(s) 245, 1178
AvaII GGWCC 1 cut(s) 340
BaeGI GKGCMC 1 cut(s) 79
BaeI ACNNNNGTAYC 2 cut(s) 972, 1005
BalI TGGCCA 2 cut(s) 99, 488
BamHI GGATCC 1 cut(s) 1183
BanI GGYRCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 372
BccI CCATC 5 cut(s) 170, 309, 419, 668, 1232
BceAI ACGGC 2 cut(s) 529, 680
BcgI CGANNNNNNTGC 6 cut(s) 56, 90, 1127, 1161, 1250, 1284
BciT130I CCWGG 5 cut(s) 129, 261, 680, 692, 1082
BciVI GTATCC 1 cut(s) 973
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 3 cut(s) 766, 844, 1096
BfmI CTRYAG 1 cut(s) 1248
BfrI CTTAAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 973
BisI GCNGC 4 cut(s) 82, 361, 554, 750
BlsI GCNGC 4 cut(s) 83, 362, 555, 751
Bme1390I CCNGG 6 cut(s) 129, 261, 569, 680, 692, 1082
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 2 cut(s) 245, 1178
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 5 cut(s) 30, 76, 720, 1112, 1185
BmrFI CCNGG 6 cut(s) 129, 261, 569, 680, 692, 1082
BmsI GCATC 2 cut(s) 835, 1064
BpmI CTGGAG 1 cut(s) 329
Bpu14I TTCGAA 2 cut(s) 44, 1137
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 569
BsaI GGTCTC 2 cut(s) 766, 1096
BsaJI CCNNGG 4 cut(s) 66, 259, 260, 750
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 788, 1087
Bse1I ACTGG 3 cut(s) 115, 406, 782
BseBI CCWGG 5 cut(s) 129, 261, 680, 692, 1082
BseDI CCNNGG 4 cut(s) 66, 259, 260, 750
BseGI GGATG 2 cut(s) 1066, 1159
BseLI CCNNNNNNNGG 3 cut(s) 88, 788, 1087
BseMII CTCAG 3 cut(s) 312, 756, 930
BseNI ACTGG 3 cut(s) 115, 406, 782
BseRI GAGGAG 1 cut(s) 407
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 372
BseYI CCCAGC 2 cut(s) 282, 446
Bsh1236I CGCG 2 cut(s) 84, 752
BshFI GGCC 6 cut(s) 65, 99, 316, 488, 516, 695
BshNI GGYRCC 1 cut(s) 74
BsiHKCI CYCGRG 2 cut(s) 245, 1178
BsiSI CCGG 1 cut(s) 568
BslI CCNNNNNNNGG 3 cut(s) 88, 788, 1087
BsmAI GTCTC 3 cut(s) 766, 844, 1096
BsmBI CGTCTC 1 cut(s) 844
BsmI GAATGC 3 cut(s) 123, 751, 1129
BsnI GGCC 6 cut(s) 65, 99, 316, 488, 516, 695
Bso31I GGTCTC 2 cut(s) 766, 1096
BsoBI CYCGRG 2 cut(s) 245, 1178
Bsp119I TTCGAA 2 cut(s) 44, 1137
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 18, 255, 1183
BspACI CCGC 5 cut(s) 79, 82, 554, 750, 752
BspANI GGCC 6 cut(s) 65, 99, 316, 488, 516, 695
BspCNI CTCAG 3 cut(s) 313, 757, 931
BspFNI CGCG 2 cut(s) 84, 752
BspHI TCATGA 1 cut(s) 1207
BspLI GGNNCC 5 cut(s) 30, 76, 720, 1112, 1185
BspMAI CTGCAG 1 cut(s) 1252
BspPI GGATC 4 cut(s) 26, 250, 1178, 1191
BspT104I TTCGAA 2 cut(s) 44, 1137
BspT107I GGYRCC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 2 cut(s) 766, 1096
BsrI ACTGG 3 cut(s) 115, 406, 782
BssECI CCNNGG 4 cut(s) 66, 259, 260, 750
BssMI GATC 3 cut(s) 18, 255, 1183
Bst2UI CCWGG 5 cut(s) 129, 261, 680, 692, 1082
Bst4CI ACNGT 3 cut(s) 37, 838, 930
Bst6I CTCTTC 2 cut(s) 305, 1098
BstAFI CTTAAG 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 1024
BstBI TTCGAA 2 cut(s) 44, 1137
BstC8I GCNNGC 4 cut(s) 79, 418, 585, 850
BstDEI CTNAG 3 cut(s) 321, 765, 939
BstDSI CCRYGG 1 cut(s) 750
BstENI CCTNNNNNAGG 1 cut(s) 1085
BstF5I GGATG 2 cut(s) 1066, 1159
BstFNI CGCG 2 cut(s) 84, 752
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 3 cut(s) 21, 258, 1186
BstMAI GTCTC 3 cut(s) 766, 844, 1096
BstMBI GATC 3 cut(s) 18, 255, 1183
BstMWI GCNNNNNNNGC 4 cut(s) 105, 553, 605, 1024
BstNI CCWGG 5 cut(s) 129, 261, 680, 692, 1082
BstSCI CCNGG 6 cut(s) 127, 259, 567, 678, 690, 1080
BstSFI CTRYAG 1 cut(s) 1248
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 2 cut(s) 84, 752
BstV1I GCAGC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 1183
BstXI CCANNNNNNTGG 1 cut(s) 1002
BstYI RGATCY 1 cut(s) 1183
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 6 cut(s) 65, 99, 316, 488, 516, 695
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 2 cut(s) 1066, 1159
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 3 cut(s) 122, 236, 935
Cac8I GCNNGC 4 cut(s) 79, 418, 585, 850
CciI TCATGA 1 cut(s) 1207
CfoI GCGC 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 340
Cfr42I CCGCGG 1 cut(s) 753
CseI GACGC 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 6 cut(s) 7, 200, 518, 595, 922, 1208
DdeI CTNAG 3 cut(s) 321, 765, 939
DpnI GATC 3 cut(s) 20, 257, 1185
DpnII GATC 3 cut(s) 18, 255, 1183
EaeI YGGCCR 4 cut(s) 97, 486, 514, 693
Eam1104I CTCTTC 2 cut(s) 305, 1098
EarI CTCTTC 2 cut(s) 305, 1098
Eco31I GGTCTC 2 cut(s) 766, 1096
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 2 cut(s) 624, 1122
Eco88I CYCGRG 2 cut(s) 245, 1178
EcoNI CCTNNNNNAGG 1 cut(s) 1085
EcoO109I RGGNCCY 1 cut(s) 340
EcoRII CCWGG 5 cut(s) 127, 259, 678, 690, 1080
Esp3I CGTCTC 1 cut(s) 844
FaeI CATG 6 cut(s) 10, 203, 521, 598, 925, 1211
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FatI CATG 6 cut(s) 6, 199, 517, 594, 921, 1207
FauI CCCGC 1 cut(s) 86
FauNDI CATATG 2 cut(s) 854, 1020
Fnu4HI GCNGC 4 cut(s) 82, 361, 554, 750
FokI GGATG 2 cut(s) 1073, 1166
Fsp4HI GCNGC 4 cut(s) 82, 361, 554, 750
GlaI GCGC 1 cut(s) 451
GluI GCNGC 4 cut(s) 82, 361, 554, 750
GsaI CCCAGC 2 cut(s) 286, 450
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 6 cut(s) 65, 99, 316, 488, 516, 695
HapII CCGG 1 cut(s) 568
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 452
Hin1II CATG 6 cut(s) 10, 203, 521, 598, 925, 1211
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 1219
HindII GTYRAC 1 cut(s) 1219
HindIII AAGCTT 1 cut(s) 574
HinfI GANTC 6 cut(s) 233, 529, 613, 899, 973, 991
HpaII CCGG 1 cut(s) 568
HphI GGTGA 6 cut(s) 191, 265, 440, 659, 766, 1000
Hpy166II GTNNAC 2 cut(s) 1219, 1278
Hpy188III TCNNGA 9 cut(s) 22, 157, 230, 542, 863, 903, 977, 1187, 1208
Hpy8I GTNNAC 2 cut(s) 1219, 1278
Hpy99I CGWCG 2 cut(s) 41, 89
HpyAV CCTTC 7 cut(s) 65, 163, 680, 709, 751, 869, 1133
HpyCH4III ACNGT 3 cut(s) 37, 838, 930
HpyCH4IV ACGT 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 553, 605, 1024
HpyF3I CTNAG 3 cut(s) 321, 765, 939
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 6 cut(s) 10, 203, 521, 598, 925, 1211
HspAI GCGC 1 cut(s) 450
KspI CCGCGG 1 cut(s) 753
Kzo9I GATC 3 cut(s) 18, 255, 1183
LmnI GCTCC 2 cut(s) 724, 1083
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 2 cut(s) 835, 1064
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 3 cut(s) 179, 632, 697
MalI GATC 3 cut(s) 20, 257, 1185
MboI GATC 3 cut(s) 18, 255, 1183
MboII GAAGA 4 cut(s) 322, 434, 1115, 1223
MflI RGATCY 1 cut(s) 1183
MhlI GDGCHC 1 cut(s) 79
MlsI TGGCCA 2 cut(s) 99, 488
MluCI AATT 4 cut(s) 46, 266, 775, 1008
MluNI TGGCCA 2 cut(s) 99, 488
MlyI GAGTC 2 cut(s) 227, 893
MmeI TCCRAC 1 cut(s) 364
Mox20I TGGCCA 2 cut(s) 99, 488
MscI TGGCCA 2 cut(s) 99, 488
MseI TTAA 5 cut(s) 111, 306, 369, 492, 1194
Msp20I TGGCCA 2 cut(s) 99, 488
MspA1I CMGCKG 3 cut(s) 286, 752, 998
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 568
MspR9I CCNGG 6 cut(s) 129, 261, 569, 680, 692, 1082
Mva1269I GAATGC 3 cut(s) 123, 751, 1129
MvaI CCWGG 5 cut(s) 129, 261, 680, 692, 1082
MvnI CGCG 2 cut(s) 84, 752
MwoI GCNNNNNNNGC 4 cut(s) 105, 553, 605, 1024
NciI CCSGG 1 cut(s) 569
NdeI CATATG 2 cut(s) 854, 1020
NdeII GATC 3 cut(s) 18, 255, 1183
NlaIII CATG 6 cut(s) 10, 203, 521, 598, 925, 1211
NlaIV GGNNCC 5 cut(s) 30, 76, 720, 1112, 1185
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 179
NspV TTCGAA 2 cut(s) 44, 1137
PaeR7I CTCGAG 1 cut(s) 1178
PagI TCATGA 1 cut(s) 1207
PasI CCCWGGG 1 cut(s) 260
PctI GAATGC 3 cut(s) 123, 751, 1129
PfeI GAWTC 4 cut(s) 529, 613, 973, 991
PkrI GCNGC 4 cut(s) 83, 362, 555, 751
PleI GAGTC 2 cut(s) 227, 893
PpsI GAGTC 2 cut(s) 227, 893
PpuMI RGGWCCY 1 cut(s) 340
PshBI ATTAAT 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 5 cut(s) 127, 259, 678, 690, 1080
PspFI CCCAGC 2 cut(s) 282, 446
PspGI CCWGG 5 cut(s) 127, 259, 678, 690, 1080
PspN4I GGNNCC 5 cut(s) 30, 76, 720, 1112, 1185
PspPI GGNCC 1 cut(s) 340
PspPPI RGGWCCY 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 1178
PstI CTGCAG 1 cut(s) 1252
PsuI RGATCY 1 cut(s) 1183
PvuII CAGCTG 2 cut(s) 286, 998
SacII CCGCGG 1 cut(s) 753
SaqAI TTAA 5 cut(s) 111, 306, 369, 492, 1194
SatI GCNGC 4 cut(s) 82, 361, 554, 750
Sau3AI GATC 3 cut(s) 18, 255, 1183
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 2 cut(s) 227, 893
ScrFI CCNGG 6 cut(s) 129, 261, 569, 680, 692, 1082
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 2 cut(s) 835, 1064
SfcI CTRYAG 1 cut(s) 1248
Sfr274I CTCGAG 1 cut(s) 1178
Sfr303I CCGCGG 1 cut(s) 753
SfuI TTCGAA 2 cut(s) 44, 1137
SgrBI CCGCGG 1 cut(s) 753
SinI GGWCC 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 1178
SmlI CTYRAG 3 cut(s) 305, 542, 1178
SmoI CTYRAG 3 cut(s) 305, 542, 1178
Sse9I AATT 4 cut(s) 46, 266, 775, 1008
SsiI CCGC 5 cut(s) 79, 82, 554, 750, 752
SspI AATATT 1 cut(s) 915
StyD4I CCNGG 6 cut(s) 127, 259, 567, 678, 690, 1080
TaaI ACNGT 3 cut(s) 37, 838, 930
TaiI ACGT 1 cut(s) 171
TaqI TCGA 5 cut(s) 44, 328, 625, 1137, 1179
TasI AATT 4 cut(s) 46, 266, 775, 1008
TauI GCSGC 3 cut(s) 84, 556, 752
TfiI GAWTC 4 cut(s) 529, 613, 973, 991
Tru1I TTAA 5 cut(s) 111, 306, 369, 492, 1194
Tru9I TTAA 5 cut(s) 111, 306, 369, 492, 1194
TscAI CASTG 3 cut(s) 122, 243, 935
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 4 cut(s) 265, 1077, 1182, 1224
TspRI CASTG 3 cut(s) 122, 243, 935
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 340
VspI ATTAAT 1 cut(s) 492
XagI CCTNNNNNAGG 1 cut(s) 1085
XhoI CTCGAG 1 cut(s) 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.