Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042737.1

Orthogroup ID

OG0004733

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1147

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042737.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 598 bp

gctgtggccgcaactgcctcaacaaatgttgcatttcaggagcaaaacttccattgtatgctttcaagaagcaaaacaactcatctggtgacaagggattttccggacatgaggggcaagaggctcccgttgcttttctggactcattacttcttggagagtgggaggatcgcatgcagaaggggctatttcgatatgatgtcactgcctgcgaaaccaaggtgatcccggggcagtttggcttcattgcccagctcaatgagggccgccaccttaagaagcgaccaactgagtttcgagttgacaaggttctccaaccttttgatggtagcaagttcaacttcactaaagttggccaagaggaggttctattccagtttgaagcgagtgaagatggtgaagttcagtttcatcctaatgcacctattgatgttgaaaattctccaagcgttgttgccatcaatgtcagtccaattgaatatgggcatgtgctgttgattcctcgtattcttgagtccttgccacaaaggattgatcgtgaaagcttcttgcttgcacttcacatggcggcagaagcagggaatccttacttccgatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008905 GO:0008928 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0010471 GO:0010472 GO:0010473 GO:0010474 GO:0010475 GO:0016043 GO:0016051 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0016772 GO:0016779 GO:0019318 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042221 GO:0042364 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046527 GO:0046677 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070568 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080046 GO:0080048 GO:0098542 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

DUF4922

Protein Analysis

198

Amino Acids

22.19

Weight (kDa)

5.77

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26850 AT5G55120
fragaria_vesca	FvH4_3g23310 FvH4_3g23310 FvH4_3g23310 FvH4_4g27370 FvH4_7g13380
malus_domestica	MD03G1195300.v1.1 MD11G1211800.v1.1
prunus_persica	Prupe.4G220800_v2.0.a1
pyrus_communis	pycom03g14760 pycom11g18690
rosa_chinensis	RchiOBHm_Chr1g0352701 RchiOBHm_Chr5g0041101
rosa_laevigata	RLG00000028319 RLG00000034024
rosa_multiflora	Rmu_co7960401.1_g000001 Rmu_sc0000095.1_g000002 Rmu_sc0042737.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039600 Rroxscaffold_4G00302460
rosa_rugosa	Rorug01G0231100 Rorug05G0189900
rosa_samantha	Rh1AG244200 Rh1BG214900 Rh1DG240900 Rh5AG275700 Rh5BG280400 Rh5CG312500 Rh5DG288700
rosa_wichuraiana	Rw5G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	3 cut(s)	9, 267, 568
AclWI	GGATC	2 cut(s)	176, 219
AcoI	YGGCCR	2 cut(s)	6, 354
AcsI	RAATTY	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	325, 363
AflII	CTTAAG	1 cut(s)	274
AgsI	TTSAA	5 cut(s)	66, 339, 382, 436, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	2 cut(s)	255, 545
AluI	AGCT	2 cut(s)	255, 545
AlwI	GGATC	2 cut(s)	176, 219
Ama87I	CYCGRG	1 cut(s)	228
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	3 cut(s)	6, 264, 354
ApoI	RAATTY	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	2 cut(s)	229, 230
AsuHPI	GGTGA	3 cut(s)	100, 234, 409
AvaI	CYCGRG	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	356
BccI	CCATC	3 cut(s)	319, 388, 466
BcnI	CCSGG	2 cut(s)	229, 230
BfrI	CTTAAG	1 cut(s)	274
BisI	GCNGC	3 cut(s)	9, 267, 569
BlsI	GCNGC	3 cut(s)	10, 268, 570
Bme1390I	CCNGG	2 cut(s)	229, 230
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	229, 230
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	2 cut(s)	229, 230
BsaJI	CCNNGG	3 cut(s)	218, 228, 229
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 363
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	245
BseAI	TCCGGA	1 cut(s)	103
BseDI	CCNNGG	3 cut(s)	218, 228, 229
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	325, 363
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	3 cut(s)	8, 266, 356
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	104, 229
BslI	CCNNNNNNNGG	2 cut(s)	325, 363
BsnI	GGCC	3 cut(s)	8, 266, 356
BsoBI	CYCGRG	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	168, 224, 534
BspACI	CCGC	3 cut(s)	9, 267, 568
BspANI	GGCC	3 cut(s)	8, 266, 356
BspCNI	CTCAG	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	176, 219
BspTI	CTTAAG	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	218, 228, 229
BssMI	GATC	3 cut(s)	168, 224, 534
BssT1I	CCWWGG	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	175, 210, 554
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	411
BstKTI	GATC	3 cut(s)	171, 227, 537
BstMBI	GATC	3 cut(s)	168, 224, 534
BstMWI	GCNNNNNNNGC	5 cut(s)	8, 14, 130, 183, 574
BstNSI	RCATGY	2 cut(s)	177, 490
BstSCI	CCNGG	2 cut(s)	227, 228
BsuRI	GGCC	3 cut(s)	8, 266, 356
BtsCI	GGATG	1 cut(s)	411
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	3 cut(s)	175, 210, 554
Cfr13I	GGNCC	1 cut(s)	264
Cfr9I	CCCGGG	1 cut(s)	228
CviAII	CATG	4 cut(s)	109, 174, 487, 564
CviJI	RGCY	8 cut(s)	8, 124, 186, 242, 255, 266, 356, 545
CviKI_1	RGCY	8 cut(s)	8, 124, 186, 242, 255, 266, 356, 545
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	3 cut(s)	170, 226, 536
DpnII	GATC	3 cut(s)	168, 224, 534
EaeI	YGGCCR	2 cut(s)	6, 354
Eco130I	CCWWGG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	4 cut(s)	112, 177, 490, 567
FaiI	YATR	7 cut(s)	59, 110, 175, 197, 482, 488, 565
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FatI	CATG	4 cut(s)	108, 173, 486, 563
Fnu4HI	GCNGC	3 cut(s)	9, 267, 569
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	3 cut(s)	9, 267, 569
GluI	GCNGC	3 cut(s)	9, 267, 569
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	8, 266, 356
HapII	CCGG	2 cut(s)	104, 229
Hin1II	CATG	4 cut(s)	112, 177, 490, 567
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	4 cut(s)	142, 498, 514, 582
HpaII	CCGG	2 cut(s)	104, 229
HphI	GGTGA	3 cut(s)	100, 234, 409
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	595
Hpy188III	TCNNGA	6 cut(s)	38, 66, 104, 139, 511, 538
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	32, 177, 421, 556
HpyF10VI	GCNNNNNNNGC	5 cut(s)	8, 14, 130, 183, 574
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	4 cut(s)	112, 177, 490, 567
Kpn2I	TCCGGA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	168, 224, 534
LmnI	GCTCC	2 cut(s)	40, 129
LpnPI	CCDG	9 cut(s)	23, 71, 117, 124, 222, 242, 265, 388, 563
MaeIII	GTNAC	2 cut(s)	88, 201
MalI	GATC	3 cut(s)	170, 226, 536
MboI	GATC	3 cut(s)	168, 224, 534
MboII	GAAGA	1 cut(s)	403
MfeI	CAATTG	1 cut(s)	473
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	2 cut(s)	438, 473
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	136, 523
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	8 cut(s)	28, 105, 114, 159, 255, 354, 357, 512
Mox20I	TGGCCA	1 cut(s)	356
MroI	TCCGGA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	274
MspI	CCGG	2 cut(s)	104, 229
MspR9I	CCNGG	2 cut(s)	229, 230
MunI	CAATTG	1 cut(s)	473
MwoI	GCNNNNNNNGC	5 cut(s)	8, 14, 130, 183, 574
NciI	CCSGG	2 cut(s)	229, 230
NdeII	GATC	3 cut(s)	168, 224, 534
NlaIII	CATG	4 cut(s)	112, 177, 490, 567
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	88, 201
NspI	RCATGY	2 cut(s)	177, 490
PaeI	GCATGC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	498, 582
PkrI	GCNGC	3 cut(s)	10, 268, 570
PleI	GAGTC	2 cut(s)	136, 522
PpsI	GAGTC	2 cut(s)	136, 522
PspFI	CCCAGC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	3 cut(s)	9, 267, 569
Sau3AI	GATC	3 cut(s)	168, 224, 534
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	2 cut(s)	136, 523
ScrFI	CCNGG	2 cut(s)	229, 230
SetI	ASST	8 cut(s)	224, 257, 275, 311, 321, 368, 426, 547
SmaI	CCCGGG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	274, 511
SmoI	CTYRAG	2 cut(s)	274, 511
SphI	GCATGC	1 cut(s)	177
Sse9I	AATT	2 cut(s)	438, 473
SsiI	CCGC	3 cut(s)	9, 267, 568
StyD4I	CCNGG	2 cut(s)	227, 228
StyI	CCWWGG	1 cut(s)	218
TaqI	TCGA	2 cut(s)	192, 297
TasI	AATT	2 cut(s)	438, 473
TauI	GCSGC	3 cut(s)	11, 269, 571
TfiI	GAWTC	2 cut(s)	498, 582
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	88, 201
Tsp45I	GTSAC	2 cut(s)	88, 201
TspDTI	ATGAA	2 cut(s)	234, 400
TspMI	CCCGGG	1 cut(s)	228
TspRI	CASTG	1 cut(s)	210
Vha464I	CTTAAG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	2 cut(s)	177, 490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmaI	CCCGGG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.