Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004733

Physical Location & Seq

Genomic Coordinates Forward (+)

22369007 .. 22371867

Gene Structure 2861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTATCGAATTATCAAAAAGATGAGACAGTTGAAGAAGGTGGATGTGGTCGGAATTGTCTGAGCAAGTGTTGCATCAATGGGGCAAGACTTCCTTTATATACCTGCAAGAATCTTGATAAATCCGTCGGAGAGAACACAGAATCTCCGGTGACGTTCCTCGAATCCTTAGTTATTGGAGAGTGGGAAGATCGTTTCCAAAGAGGTCTTTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAAGTACGGTTTCATTGCGCAGCTGAATGAAGGTCGGCATCTCAAGAAGAGACCAACCGAGTTCCGTGTTGACAAAGTTCTTCAACCATTTGATGGAAACAAATTCAATTTCACTAAAGTTGGTCAAGAAGAGTTGCTTTTCCAGTTTAAAGCTAGCACTAATGATGATGATAGTGAAATTCAGTTCTTGGCGAGTATGCCTCTAGACGCTGATAATTCTCCTAGCGTCGTTGCAATCAATGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCCGTATTTCCGACTTGGATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAGGCTTACTATTTGGCAATGCAATTCCCGATAGAGAAAGCTTCTTCCTTGAAGATCACTACCACCAATAATGGCGTCAAAATCTCTAAACTCTTGAATTACCCTGTGAGAGGTCTTCTAGTTGAAGGTGGAAACACCATTAAAGATCTCGCAGATACTGTATCAGACGCATCCGTTTGTCTTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGACTCTGGCAAACGAATCTTCCTTCTCCCTCAGTGTTACGCAGAGAAACAGGCTTTAGGAGAAGTTAGCTCAACGCTATTGGATACGCAAGTGAATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGGAAAGAAGACTATGAAGGAGCGTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCTTTATCAGAGGAGAGATTCAGAGAAGTTAACACTATGATATTTGATGCCATCGGTTTTAGTAGTCACGAAGAAGAAGAAGAAGAGGAGCTTGAAGAGCAGAATTCGATGAATGGTGGCAGCTTCACAATAGTGCATTGTCCTTCAGTGAAAGAAGAGGCTGTCTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008905 GO:0008928 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0010471 GO:0010472 GO:0010473 GO:0010474 GO:0010475 GO:0016043 GO:0016051 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0016772 GO:0016779 GO:0019318 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042221 GO:0042364 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046527 GO:0046677 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070568 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080046 GO:0080048 GO:0098542 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

DUF4922

Protein Analysis

431

Amino Acids

48.32

Weight (kDa)

5.06

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	64 - 239	6.3e-74	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	246 - 392	2.4e-65	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26850 AT5G55120
fragaria_vesca	FvH4_3g23310 FvH4_3g23310 FvH4_3g23310 FvH4_4g27370 FvH4_7g13380
malus_domestica	MD03G1195300.v1.1 MD11G1211800.v1.1
prunus_persica	Prupe.4G220800_v2.0.a1
pyrus_communis	pycom03g14760 pycom11g18690
rosa_chinensis	RchiOBHm_Chr1g0352701 RchiOBHm_Chr5g0041101
rosa_laevigata	RLG00000028319 RLG00000034024
rosa_multiflora	Rmu_co7960401.1_g000001 Rmu_sc0000095.1_g000002 Rmu_sc0042737.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039600 Rroxscaffold_4G00302460
rosa_rugosa	Rorug01G0231100 Rorug05G0189900
rosa_samantha	Rh1AG244200 Rh1BG214900 Rh1DG240900 Rh5AG275700 Rh5BG280400 Rh5CG312500 Rh5DG288700
rosa_wichuraiana	Rw5G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	3 cut(s)	258, 629, 1028
AcsI	RAATTY	3 cut(s)	386, 462, 1225
AcuI	CTGAAG	4 cut(s)	654, 875, 1137, 1251
AcyI	GRCGYC	1 cut(s)	783
AdeI	CACNNNGTG	1 cut(s)	1054
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	377, 818
AleI	CACNNNNGTG	1 cut(s)	1253
AluBI	AGCT	7 cut(s)	307, 437, 749, 996, 1115, 1213, 1245
AluI	AGCT	7 cut(s)	307, 437, 749, 996, 1115, 1213, 1245
Alw26I	GTCTC	3 cut(s)	50, 328, 1291
AlwNI	CAGNNNCTG	1 cut(s)	866
ApeKI	GCWGC	2 cut(s)	304, 1242
ApoI	RAATTY	3 cut(s)	386, 462, 1225
AspLEI	GCGC	2 cut(s)	304, 680
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	193, 247
AsuNHI	GCTAGC	1 cut(s)	437
BaeI	ACNNNNGTAYC	6 cut(s)	18, 51, 655, 688, 1002, 1035
BauI	CACGAG	1 cut(s)	564
BbsI	GAAGAC	3 cut(s)	815, 881, 1077
BbvI	GCAGC	2 cut(s)	316, 1254
BccI	CCATC	3 cut(s)	371, 705, 1181
BciVI	GTATCC	2 cut(s)	656, 1003
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	3 cut(s)	50, 328, 1291
BfaI	CTAG	6 cut(s)	438, 488, 507, 674, 827, 1112
BfoI	RGCGCY	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	2 cut(s)	656, 1003
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	3 cut(s)	305, 630, 1243
BlsI	GCNGC	3 cut(s)	306, 631, 1244
Bme1390I	CCNGG	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	4 cut(s)	114, 331, 887, 1159
BmtI	GCTAGC	1 cut(s)	441
BpiI	GAAGAC	3 cut(s)	815, 881, 1077
BplI	GAGNNNNNCTC	3 cut(s)	469, 501, 1271
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	270, 281
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 818
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	2 cut(s)	297, 732
BseDI	CCNNGG	2 cut(s)	270, 281
BseGI	GGATG	2 cut(s)	80, 878
BseLI	CCNNNNNNNGG	2 cut(s)	377, 818
BseMI	GCAATG	2 cut(s)	297, 732
BseMII	CTCAG	2 cut(s)	83, 971
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	2 cut(s)	1148, 1223
BseXI	GCAGC	2 cut(s)	316, 1254
BsiSI	CCGG	2 cut(s)	179, 281
BslI	CCNNNNNNNGG	2 cut(s)	377, 818
BsmAI	GTCTC	3 cut(s)	50, 328, 1291
Bso31I	GGTCTC	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	12, 220, 595, 762, 853
BspACI	CCGC	3 cut(s)	258, 629, 1028
BspCNI	CTCAG	2 cut(s)	84, 970
BspMI	ACCTGC	1 cut(s)	143
BspOI	GCTAGC	1 cut(s)	441
BspQI	GCTCTTC	2 cut(s)	624, 1212
BspTNI	GGTCTC	1 cut(s)	328
BsrDI	GCAATG	2 cut(s)	297, 732
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	270, 281
BssMI	GATC	5 cut(s)	12, 220, 595, 762, 853
BssNI	GRCGYC	1 cut(s)	783
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	564
Bst4CI	ACNGT	5 cut(s)	31, 61, 293, 671, 868
Bst6I	CTCTTC	8 cut(s)	326, 408, 624, 1055, 1086, 1200, 1212, 1272
BstACI	GRCGYC	1 cut(s)	783
BstAPI	GCANNNNNTGC	2 cut(s)	102, 553
BstC8I	GCNNGC	3 cut(s)	262, 439, 615
BstDEI	CTNAG	3 cut(s)	92, 199, 957
BstENI	CCTNNNNNAGG	1 cut(s)	816
BstF5I	GGATG	2 cut(s)	80, 878
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	2 cut(s)	304, 680
BstKTI	GATC	5 cut(s)	15, 223, 598, 765, 856
BstMAI	GTCTC	3 cut(s)	50, 328, 1291
BstMBI	GATC	5 cut(s)	12, 220, 595, 762, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 553, 635, 1219
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	316, 1254
BstV2I	GAAGAC	3 cut(s)	815, 881, 1077
BstX2I	RGATCY	1 cut(s)	853
BstXI	CCANNNNNNTGG	1 cut(s)	1032
BstYI	RGATCY	1 cut(s)	853
BsuI	GTATCC	2 cut(s)	656, 1003
BtsCI	GGATG	2 cut(s)	80, 878
BtsIMutI	CAGTG	2 cut(s)	965, 1275
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	262, 439, 615
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	2 cut(s)	304, 680
CseI	GACGC	5 cut(s)	499, 500, 772, 884, 1074
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	548, 1051, 1101
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	92, 199, 957
DpnI	GATC	5 cut(s)	14, 222, 597, 764, 855
DpnII	GATC	5 cut(s)	12, 220, 595, 762, 853
DraI	TTTAAA	1 cut(s)	433
DraIII	CACNNNGTG	1 cut(s)	1054
Eam1104I	CTCTTC	8 cut(s)	326, 408, 624, 1055, 1086, 1200, 1212, 1272
EarI	CTCTTC	8 cut(s)	326, 408, 624, 1055, 1086, 1200, 1212, 1272
Eco130I	CCWWGG	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	328
Eco57I	CTGAAG	4 cut(s)	654, 875, 1137, 1251
EcoNI	CCTNNNNNAGG	1 cut(s)	816
EcoRI	GAATTC	1 cut(s)	1225
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	3 cut(s)	551, 1054, 1104
FalI	AAGNNNNNCTT	6 cut(s)	109, 141, 405, 437, 1197, 1229
FatI	CATG	3 cut(s)	547, 1050, 1100
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	305, 630, 1243
FokI	GGATG	2 cut(s)	87, 865
Fsp4HI	GCNGC	3 cut(s)	305, 630, 1243
FspBI	CTAG	6 cut(s)	438, 488, 507, 674, 827, 1112
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	2 cut(s)	303, 679
GluI	GCNGC	3 cut(s)	305, 630, 1243
HaeII	RGCGCY	1 cut(s)	681
HapII	CCGG	2 cut(s)	179, 281
HgaI	GACGC	5 cut(s)	499, 500, 772, 884, 1074
HhaI	GCGC	2 cut(s)	304, 680
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	3 cut(s)	551, 1054, 1104
Hin6I	GCGC	2 cut(s)	302, 678
HinP1I	GCGC	2 cut(s)	302, 678
HincII	GTYRAC	2 cut(s)	355, 1153
HindII	GTYRAC	2 cut(s)	355, 1153
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	9 cut(s)	142, 173, 194, 529, 559, 929, 942, 1021, 1140
HpaI	GTTAAC	1 cut(s)	1153
HpaII	CCGG	2 cut(s)	179, 281
HphI	GGTGA	2 cut(s)	193, 247
Hpy166II	GTNNAC	3 cut(s)	355, 1046, 1153
Hpy188III	TCNNGA	8 cut(s)	146, 328, 410, 488, 572, 736, 802, 1190
Hpy8I	GTNNAC	3 cut(s)	355, 1046, 1153
Hpy99I	CGWCG	2 cut(s)	161, 515
HpyAV	CCTTC	7 cut(s)	62, 308, 827, 959, 1073, 1090, 1275
HpyCH4III	ACNGT	5 cut(s)	31, 61, 293, 671, 868
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	105, 138, 518, 730, 1258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 553, 635, 1219
HpyF3I	CTNAG	3 cut(s)	92, 199, 957
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	3 cut(s)	551, 1054, 1104
HspAI	GCGC	2 cut(s)	302, 678
Ksp22I	TGATCA	1 cut(s)	595
KspAI	GTTAAC	1 cut(s)	1153
Kzo9I	GATC	5 cut(s)	12, 220, 595, 762, 853
LguI	GCTCTTC	2 cut(s)	624, 1212
LmnI	GCTCC	2 cut(s)	1082, 1210
Lsp1109I	GCAGC	2 cut(s)	316, 1254
LweI	GCATC	4 cut(s)	114, 331, 887, 1159
MaeI	CTAG	6 cut(s)	438, 488, 507, 674, 827, 1112
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	5 cut(s)	181, 253, 962, 1107, 1187
MalI	GATC	5 cut(s)	14, 222, 597, 764, 855
MboI	GATC	5 cut(s)	12, 220, 595, 762, 853
MflI	RGATCY	1 cut(s)	853
MlyI	GAGTC	2 cut(s)	538, 923
MmeI	TCCRAC	4 cut(s)	50, 62, 139, 679
MseI	TTAA	4 cut(s)	432, 693, 849, 1152
MslI	CAYNNNNRTG	1 cut(s)	1253
MspA1I	CMGCKG	2 cut(s)	307, 1028
MspI	CCGG	2 cut(s)	179, 281
MspR9I	CCNGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	102, 553, 635, 1219
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	5 cut(s)	12, 220, 595, 762, 853
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	3 cut(s)	551, 1054, 1104
NmuCI	GTSAC	3 cut(s)	181, 253, 1187
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	1 cut(s)	551
OliI	CACNNNNGTG	1 cut(s)	1253
PciSI	GCTCTTC	2 cut(s)	624, 1212
PfeI	GAWTC	7 cut(s)	142, 173, 194, 559, 942, 1021, 1140
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	306, 631, 1244
PleI	GAGTC	2 cut(s)	537, 923
PpsI	GAGTC	2 cut(s)	537, 923
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	853
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	1253
SapI	GCTCTTC	2 cut(s)	624, 1212
SaqAI	TTAA	4 cut(s)	432, 693, 849, 1152
SatI	GCNGC	3 cut(s)	305, 630, 1243
Sau3AI	GATC	5 cut(s)	12, 220, 595, 762, 853
SchI	GAGTC	2 cut(s)	538, 923
ScrFI	CCNGG	1 cut(s)	282
SfaNI	GCATC	4 cut(s)	114, 331, 887, 1159
SmiMI	CAYNNNNRTG	1 cut(s)	1253
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SsiI	CCGC	3 cut(s)	258, 629, 1028
SspMI	CTAG	6 cut(s)	438, 488, 507, 674, 827, 1112
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	5 cut(s)	31, 61, 293, 671, 868
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	3 cut(s)	38, 192, 1229
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	7 cut(s)	142, 173, 194, 559, 942, 1021, 1140
Tru1I	TTAA	4 cut(s)	432, 693, 849, 1152
Tru9I	TTAA	4 cut(s)	432, 693, 849, 1152
TscAI	CASTG	2 cut(s)	965, 1275
TseFI	GTSAC	3 cut(s)	181, 253, 1187
TseI	GCWGC	2 cut(s)	304, 1242
Tsp45I	GTSAC	3 cut(s)	181, 253, 1187
TspDTI	ATGAA	4 cut(s)	286, 327, 1092, 1247
TspGWI	ACGGA	4 cut(s)	145, 338, 636, 871
TspRI	CASTG	2 cut(s)	965, 1275
Van91I	CCANNNNNTGG	1 cut(s)	377
XagI	CCTNNNNNAGG	1 cut(s)	816
XapI	RAATTY	3 cut(s)	386, 462, 1225
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	551
XspI	CTAG	6 cut(s)	438, 488, 507, 674, 827, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.