Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004733

Physical Location & Seq

Genomic Coordinates Forward (+)

34474585 .. 34477933

Gene Structure 3349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG312500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCAGAAGGGGCTATTTCGATATGATGTCACTGCCTGCGAAACCAAGGTGATCCCGGGGCAGTTTGGCTTCATTGCCCAGCTCAATGAGGGCCGCCACCTTAAGAAGCGACCAACCGAGTTTCGAGTTGACAAGGTTCTCCAACCTTTTGATGGTAGCAAGTTCAACTTCACTAAAGTTGGCCAAGAGGAGGTTCTGTTCCAGTTTGAAGCGAGTGAAGATGGTGAAGTTCAGTTTCACCCTAATGCACCTATTGATGTTGAAAATTCTCCAAGCGTTGTTGCCATCAATGTCAGTCCAATTGAATACGGGCATGTGCTGTTGATTCCTCGTATTCTTGAGTCTTTGCCACAAAGGATTGATCGTGAAAGCTTCTTGCTTGCACTTCACATGGCGGCAGAAGCAGGGAATCCATACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAATCACCTTCACTTCCAGGCTTACTACTTGGCCGTAACCTTTCCCATTGAAAAGGCTCCTACTAAGAAAATAACCACCTCGGATGTTGGGGTGAAGATCTCTGAGCTTCTGAACTATCCTGTTAGAGGTCTAGTTTTTGAGGGTGGAAATACTCTTGAAGATTTGTCAAACTCTGTCTCTGATGCCTGCATTTGCCTTCAAGAGAACAACATTCCTTACAATGTCCTCATATCCGACTGTGGAAAGCGGATCTTTCTCTTGCCACAGTGTTATGCTGAGAAACAAGCTCTTGGGGAAGTTAGGGCAGAGCTTCTGGATACTCAGGTGAATCCAGCTGTGTGGGAAATTAGTGGACATATGGTGTTAAAGAGGAGGGAGGACTATGATGAGGCTTCTGATGAAAATGCTTGGAAGCTCCTGGCTGAGGTCTCTCTTTCTGAAGAGAGGTTCCAAGAGGTGAACGCTCTTATATTTGGAGCCATTGCTTGTGGTGGCGATGATGGGAATGCAAATTTACTAGAGGATCCAGATGTGAAGCCTCGCTCTCATGAAGAAGTCAATGCCATTAACAAAAGCTCTCGTCATGCTATAGTGTCCGGAACTCAGGAATGCCTCGTTCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008905 GO:0008928 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0010471 GO:0010472 GO:0010473 GO:0010474 GO:0010475 GO:0016043 GO:0016051 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0016772 GO:0016779 GO:0019318 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042221 GO:0042364 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046527 GO:0046677 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070568 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080046 GO:0080048 GO:0098542 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

DUF4922

Protein Analysis

361

Amino Acids

40.24

Weight (kDa)

4.96

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	1 - 161	2.6e-71	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	168 - 315	6e-71	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26850 AT5G55120
fragaria_vesca	FvH4_3g23310 FvH4_3g23310 FvH4_3g23310 FvH4_4g27370 FvH4_7g13380
malus_domestica	MD03G1195300.v1.1 MD11G1211800.v1.1
prunus_persica	Prupe.4G220800_v2.0.a1
pyrus_communis	pycom03g14760 pycom11g18690
rosa_chinensis	RchiOBHm_Chr1g0352701 RchiOBHm_Chr5g0041101
rosa_laevigata	RLG00000028319 RLG00000034024
rosa_multiflora	Rmu_co7960401.1_g000001 Rmu_sc0000095.1_g000002 Rmu_sc0042737.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039600 Rroxscaffold_4G00302460
rosa_rugosa	Rorug01G0231100 Rorug05G0189900
rosa_samantha	Rh1AG244200 Rh1BG214900 Rh1DG240900 Rh5AG275700 Rh5BG280400 Rh5CG312500 Rh5DG288700
rosa_wichuraiana	Rw5G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1055
AciI	CCGC	3 cut(s)	94, 395, 706
AclWI	GGATC	4 cut(s)	46, 716, 977, 990
AcoI	YGGCCR	2 cut(s)	181, 489
AcsI	RAATTY	2 cut(s)	265, 970
AcuI	CTGAAG	1 cut(s)	918
AfiI	CCNNNNNNNGG	4 cut(s)	152, 190, 584, 883
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	7 cut(s)	166, 209, 263, 305, 509, 617, 659
AjnI	CCWGG	2 cut(s)	474, 876
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	9 cut(s)	82, 372, 438, 565, 746, 769, 794, 874, 1035
AluI	AGCT	9 cut(s)	82, 372, 438, 565, 746, 769, 794, 874, 1035
Alw26I	GTCTC	2 cut(s)	640, 892
AlwI	GGATC	4 cut(s)	46, 716, 977, 990
Ama87I	CYCGRG	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	1055
AoxI	GGCC	3 cut(s)	91, 181, 489
ApoI	RAATTY	2 cut(s)	265, 970
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	2 cut(s)	56, 57
AsuHPI	GGTGA	7 cut(s)	61, 230, 236, 455, 562, 796, 928
AvaI	CYCGRG	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	768, 801
BalI	TGGCCA	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	982
BbvCI	CCTCAGC	1 cut(s)	882
BccI	CCATC	5 cut(s)	146, 215, 293, 464, 953
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	2 cut(s)	476, 878
BciVI	GTATCC	1 cut(s)	769
BcnI	CCSGG	2 cut(s)	56, 57
BcoDI	GTCTC	2 cut(s)	640, 892
BfaI	CTAG	2 cut(s)	590, 977
BfmI	CTRYAG	2 cut(s)	1047, 1079
BfrI	CTTAAG	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	769
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	2 cut(s)	94, 396
BlsI	GCNGC	2 cut(s)	95, 397
Bme1390I	CCNGG	4 cut(s)	56, 57, 476, 878
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	4 cut(s)	516, 908, 937, 984
BmrFI	CCNGG	4 cut(s)	56, 57, 476, 878
BmsI	GCATC	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	56, 57
BsaI	GGTCTC	1 cut(s)	892
BsaJI	CCNNGG	4 cut(s)	45, 55, 56, 537
BsaWI	WCCGGW	1 cut(s)	1055
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 190, 584, 883
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	2 cut(s)	72, 939
BseAI	TCCGGA	1 cut(s)	1055
BseBI	CCWGG	2 cut(s)	476, 878
BseDI	CCNNGG	4 cut(s)	45, 55, 56, 537
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	4 cut(s)	152, 190, 584, 883
BseMI	GCAATG	2 cut(s)	72, 939
BseMII	CTCAG	5 cut(s)	552, 726, 794, 873, 1076
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	2 cut(s)	203, 844
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	3 cut(s)	93, 183, 491
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	56, 1056
BslI	CCNNNNNNNGG	4 cut(s)	152, 190, 584, 883
BsmAI	GTCTC	2 cut(s)	640, 892
BsmI	GAATGC	2 cut(s)	970, 1073
BsnI	GGCC	3 cut(s)	93, 183, 491
Bso31I	GGTCTC	1 cut(s)	892
BsoBI	CYCGRG	1 cut(s)	55
Bsp13I	TCCGGA	1 cut(s)	1055
Bsp143I	GATC	5 cut(s)	51, 361, 555, 708, 982
BspACI	CCGC	3 cut(s)	94, 395, 706
BspANI	GGCC	3 cut(s)	93, 183, 491
BspCNI	CTCAG	5 cut(s)	553, 727, 793, 874, 1075
BspEI	TCCGGA	1 cut(s)	1055
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	4 cut(s)	516, 908, 937, 984
BspMAI	CTGCAG	1 cut(s)	1083
BspPI	GGATC	4 cut(s)	46, 716, 977, 990
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	892
BsrDI	GCAATG	2 cut(s)	72, 939
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	4 cut(s)	45, 55, 56, 537
BssMI	GATC	5 cut(s)	51, 361, 555, 708, 982
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	476, 878
Bst4CI	ACNGT	2 cut(s)	698, 726
Bst6I	CTCTTC	1 cut(s)	894
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	37, 381, 646
BstDEI	CTNAG	6 cut(s)	522, 561, 735, 780, 882, 1062
BstENI	CCTNNNNNAGG	2 cut(s)	582, 881
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	5 cut(s)	54, 364, 558, 711, 985
BstMAI	GTCTC	2 cut(s)	640, 892
BstMBI	GATC	5 cut(s)	51, 361, 555, 708, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 401
BstNI	CCWGG	2 cut(s)	476, 878
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	4 cut(s)	54, 55, 474, 876
BstSFI	CTRYAG	2 cut(s)	1047, 1079
BstX2I	RGATCY	3 cut(s)	555, 708, 982
BstXI	CCANNNNNNTGG	1 cut(s)	798
BstYI	RGATCY	3 cut(s)	555, 708, 982
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	93, 183, 491
BtgZI	GCGATG	1 cut(s)	969
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 731
Cac8I	GCNNGC	3 cut(s)	37, 381, 646
CciI	TCATGA	1 cut(s)	1006
Cfr13I	GGNCC	1 cut(s)	91
Cfr9I	CCCGGG	1 cut(s)	55
CviAII	CATG	4 cut(s)	314, 391, 1007, 1043
DdeI	CTNAG	6 cut(s)	522, 561, 735, 780, 882, 1062
DpnI	GATC	5 cut(s)	53, 363, 557, 710, 984
DpnII	GATC	5 cut(s)	51, 361, 555, 708, 982
EaeI	YGGCCR	2 cut(s)	181, 489
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	892
Eco57I	CTGAAG	1 cut(s)	918
Eco88I	CYCGRG	1 cut(s)	55
EcoNI	CCTNNNNNAGG	2 cut(s)	582, 881
EcoRII	CCWGG	2 cut(s)	474, 876
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	4 cut(s)	317, 394, 1010, 1046
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 695, 727
FatI	CATG	4 cut(s)	313, 390, 1006, 1042
FauNDI	CATATG	1 cut(s)	816
Fnu4HI	GCNGC	2 cut(s)	94, 396
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	2 cut(s)	94, 396
FspBI	CTAG	2 cut(s)	590, 977
GluI	GCNGC	2 cut(s)	94, 396
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	93, 183, 491
HapII	CCGG	2 cut(s)	56, 1056
Hin1II	CATG	4 cut(s)	317, 394, 1010, 1046
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	4 cut(s)	325, 341, 409, 787
HpaII	CCGG	2 cut(s)	56, 1056
HphI	GGTGA	7 cut(s)	61, 230, 236, 455, 562, 796, 928
Hpy166II	GTNNAC	3 cut(s)	130, 812, 919
Hpy188I	TCNGA	8 cut(s)	422, 541, 562, 570, 640, 694, 856, 898
Hpy188III	TCNNGA	9 cut(s)	338, 365, 614, 659, 773, 986, 1007, 1056, 1064
Hpy8I	GTNNAC	3 cut(s)	130, 812, 919
HpyAV	CCTTC	2 cut(s)	476, 665
HpyCH4III	ACNGT	2 cut(s)	698, 726
HpyCH4V	TGCA	7 cut(s)	4, 248, 383, 446, 648, 968, 1081
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 401
HpyF3I	CTNAG	6 cut(s)	522, 561, 735, 780, 882, 1062
Hsp92II	CATG	4 cut(s)	317, 394, 1010, 1046
Kpn2I	TCCGGA	1 cut(s)	1055
Kzo9I	GATC	5 cut(s)	51, 361, 555, 708, 982
LmnI	GCTCC	3 cut(s)	520, 879, 935
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	2 cut(s)	590, 977
MaeIII	GTNAC	3 cut(s)	28, 428, 493
MalI	GATC	5 cut(s)	53, 363, 557, 710, 984
MboI	GATC	5 cut(s)	51, 361, 555, 708, 982
MboII	GAAGA	5 cut(s)	230, 565, 629, 911, 1022
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	3 cut(s)	555, 708, 982
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	4 cut(s)	265, 300, 804, 970
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	166, 717
Mox20I	TGGCCA	1 cut(s)	183
MroI	TCCGGA	1 cut(s)	1055
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	3 cut(s)	102, 824, 1026
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	794
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	2 cut(s)	56, 1056
MspR9I	CCNGG	4 cut(s)	56, 57, 476, 878
MunI	CAATTG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	970, 1073
MvaI	CCWGG	2 cut(s)	476, 878
MwoI	GCNNNNNNNGC	2 cut(s)	10, 401
NciI	CCSGG	2 cut(s)	56, 57
NdeI	CATATG	1 cut(s)	816
NdeII	GATC	5 cut(s)	51, 361, 555, 708, 982
NlaIII	CATG	4 cut(s)	317, 394, 1010, 1046
NlaIV	GGNNCC	4 cut(s)	516, 908, 937, 984
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	317
PagI	TCATGA	1 cut(s)	1006
PctI	GAATGC	2 cut(s)	970, 1073
PfeI	GAWTC	3 cut(s)	325, 409, 787
PkrI	GCNGC	2 cut(s)	95, 397
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	474, 876
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	474, 876
PspN4I	GGNNCC	4 cut(s)	516, 908, 937, 984
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	1083
PsuI	RGATCY	3 cut(s)	555, 708, 982
PvuII	CAGCTG	1 cut(s)	794
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	102, 824, 1026
SatI	GCNGC	2 cut(s)	94, 396
Sau3AI	GATC	5 cut(s)	51, 361, 555, 708, 982
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	4 cut(s)	56, 57, 476, 878
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	2 cut(s)	1047, 1079
SmaI	CCCGGG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	101, 338
SmoI	CTYRAG	2 cut(s)	101, 338
Sse9I	AATT	4 cut(s)	265, 300, 804, 970
SsiI	CCGC	3 cut(s)	94, 395, 706
SspMI	CTAG	2 cut(s)	590, 977
StyD4I	CCNGG	4 cut(s)	54, 55, 474, 876
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	698, 726
TaqI	TCGA	2 cut(s)	19, 124
TasI	AATT	4 cut(s)	265, 300, 804, 970
TauI	GCSGC	2 cut(s)	96, 398
TfiI	GAWTC	3 cut(s)	325, 409, 787
Tru1I	TTAA	3 cut(s)	102, 824, 1026
Tru9I	TTAA	3 cut(s)	102, 824, 1026
TscAI	CASTG	2 cut(s)	37, 731
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	61, 873, 1023
TspMI	CCCGGG	1 cut(s)	55
TspRI	CASTG	2 cut(s)	37, 731
Vha464I	CTTAAG	1 cut(s)	101
XagI	CCTNNNNNAGG	2 cut(s)	582, 881
XapI	RAATTY	2 cut(s)	265, 970
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmaI	CCCGGG	1 cut(s)	55
XspI	CTAG	2 cut(s)	590, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.