Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004733

Physical Location & Seq

Genomic Coordinates Forward (+)

36958558 .. 36962114

Gene Structure 3557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG275700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCAGAAGGGGCTATTTCGATATGATGTCACTGCCTGCGAAACCAAGGTGATCCCAGGCCAGTTTGGCTTCATTGCCCAGCTCAATGAGGGCCGCCACCTTAAGAAGCGACCAACTGAGTTTCGAGTTGACAAGGTTCTCCAACCTTTTGATGGTAGCAAGTTCAACTTCACTAAAGTTGGCCAAGAGGAGGTTCTGTTCCAGTTTGAAGCAAGTGAAGATGGTGAAGTTCAGTTTCACCCTAATGCACCTATTGATGTTGAAAATTCTCCAAGCGTCGTTGCCATCAATGTCAGTCCAATTGAATATGGGCATGTGCTGTTGATTCCTCGTATTCTTGAGTCTTTGCCACAAAGGATTGATCGTGAAAGCTTCTTGCTTGCACTTCACATGGCGGCAGAAGCAGGGAATCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAATCACCTTCACTTCCAGGCTTACTACTTGGCTGTAACCTTCCCCATTGAAAAGGCTCCTACTAAGAAAATTACCAGTTTGGATGTTGGGGTGAAGATCTCTGAGCTTCTGAACTATCCTGTTAGAGGTCTAGTTTTTGAGGGTGGAAATACTCTGGAAGATTTGTCAAACTCTGTCTCTGATGCCTGCATTTGCCTTCAAGAGAACAACATTCCTTACAATGTCCTCATATCTGACTGTGGAAAGCGGATCTTTCTCTTGCCACAGTGTTATGCTGAGAAACAAGCTCTTGGGGAAGTTAGGGCAGAGCTTCTGGATACTCAGGTGAATCCAGCTGTGTGGGAAATTAGTGGACATATGGTGTTAAAGAGGAGGGAGGACTATGATGAGGCTTCTGATGAAAATGCTTGGAAGCTCCTGGCTGAGGTCTCTCTTTCTGAAGAGAGGTTCCAAGAGGTGAACACTCTTATATTTGGAGCCATTGCTTGTGGTGGCGATGATGGGAATGCAAATTTACTAGAGGATCCAGATGTGAAGCCTCGCTCTCATGAAGAAGTCAATGCCATTAACAAAAGCTCCCGTCATGCTATACTGTCCGGGACACAGGAATGCCTCGTTCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008905 GO:0008928 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0010471 GO:0010472 GO:0010473 GO:0010474 GO:0010475 GO:0016043 GO:0016051 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0016772 GO:0016779 GO:0019318 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042221 GO:0042364 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046527 GO:0046677 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070568 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080046 GO:0080048 GO:0098542 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

DUF4922

Protein Analysis

361

Amino Acids

40.3

Weight (kDa)

4.96

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	1 - 161	2.6e-71	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	168 - 315	1.7e-70	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26850 AT5G55120
fragaria_vesca	FvH4_3g23310 FvH4_3g23310 FvH4_3g23310 FvH4_4g27370 FvH4_7g13380
malus_domestica	MD03G1195300.v1.1 MD11G1211800.v1.1
prunus_persica	Prupe.4G220800_v2.0.a1
pyrus_communis	pycom03g14760 pycom11g18690
rosa_chinensis	RchiOBHm_Chr1g0352701 RchiOBHm_Chr5g0041101
rosa_laevigata	RLG00000028319 RLG00000034024
rosa_multiflora	Rmu_co7960401.1_g000001 Rmu_sc0000095.1_g000002 Rmu_sc0042737.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039600 Rroxscaffold_4G00302460
rosa_rugosa	Rorug01G0231100 Rorug05G0189900
rosa_samantha	Rh1AG244200 Rh1BG214900 Rh1DG240900 Rh5AG275700 Rh5BG280400 Rh5CG312500 Rh5DG288700
rosa_wichuraiana	Rw5G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	94, 395, 706
AclWI	GGATC	4 cut(s)	46, 716, 977, 990
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	265, 970
AcuI	CTGAAG	1 cut(s)	918
AfiI	CCNNNNNNNGG	4 cut(s)	152, 190, 584, 883
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	6 cut(s)	166, 209, 263, 305, 509, 659
AjnI	CCWGG	3 cut(s)	55, 474, 876
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	9 cut(s)	82, 372, 438, 565, 746, 769, 794, 874, 1035
AluI	AGCT	9 cut(s)	82, 372, 438, 565, 746, 769, 794, 874, 1035
Alw26I	GTCTC	2 cut(s)	640, 892
AlwI	GGATC	4 cut(s)	46, 716, 977, 990
AoxI	GGCC	3 cut(s)	58, 91, 181
ApoI	RAATTY	2 cut(s)	265, 970
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	1057
AsuHPI	GGTGA	7 cut(s)	61, 230, 236, 455, 562, 796, 928
BaeI	ACNNNNGTAYC	2 cut(s)	768, 801
BalI	TGGCCA	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	982
BbvCI	CCTCAGC	1 cut(s)	882
BccI	CCATC	5 cut(s)	146, 215, 293, 464, 953
BciT130I	CCWGG	3 cut(s)	57, 476, 878
BciVI	GTATCC	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	1057
BcoDI	GTCTC	2 cut(s)	640, 892
BfaI	CTAG	2 cut(s)	590, 977
BfmI	CTRYAG	1 cut(s)	1079
BfrI	CTTAAG	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	769
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	2 cut(s)	94, 396
BlsI	GCNGC	2 cut(s)	95, 397
Bme1390I	CCNGG	4 cut(s)	57, 476, 878, 1057
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	4 cut(s)	516, 908, 937, 984
BmrFI	CCNGG	4 cut(s)	57, 476, 878, 1057
BmsI	GCATC	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	1057
BsaI	GGTCTC	1 cut(s)	892
BsaJI	CCNNGG	2 cut(s)	45, 55
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 1019, 1049
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 190, 584, 883
Bse1I	ACTGG	3 cut(s)	61, 202, 534
Bse3DI	GCAATG	2 cut(s)	72, 939
BseBI	CCWGG	3 cut(s)	57, 476, 878
BseDI	CCNNGG	2 cut(s)	45, 55
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	4 cut(s)	152, 190, 584, 883
BseMI	GCAATG	2 cut(s)	72, 939
BseMII	CTCAG	5 cut(s)	108, 552, 726, 794, 873
BseNI	ACTGG	3 cut(s)	61, 202, 534
BseRI	GAGGAG	2 cut(s)	203, 844
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	3 cut(s)	60, 93, 183
BsiSI	CCGG	1 cut(s)	1056
BslFI	GGGAC	1 cut(s)	1072
BslI	CCNNNNNNNGG	4 cut(s)	152, 190, 584, 883
BsmAI	GTCTC	2 cut(s)	640, 892
BsmFI	GGGAC	1 cut(s)	1072
BsmI	GAATGC	2 cut(s)	970, 1073
BsnI	GGCC	3 cut(s)	60, 93, 183
Bso31I	GGTCTC	1 cut(s)	892
Bsp143I	GATC	5 cut(s)	51, 361, 555, 708, 982
BspACI	CCGC	3 cut(s)	94, 395, 706
BspANI	GGCC	3 cut(s)	60, 93, 183
BspCNI	CTCAG	5 cut(s)	109, 553, 727, 793, 874
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	4 cut(s)	516, 908, 937, 984
BspMAI	CTGCAG	1 cut(s)	1083
BspPI	GGATC	4 cut(s)	46, 716, 977, 990
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	892
BsrDI	GCAATG	2 cut(s)	72, 939
BsrI	ACTGG	3 cut(s)	61, 202, 534
BssECI	CCNNGG	2 cut(s)	45, 55
BssMI	GATC	5 cut(s)	51, 361, 555, 708, 982
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	57, 476, 878
Bst4CI	ACNGT	3 cut(s)	698, 726, 1053
Bst6I	CTCTTC	1 cut(s)	894
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	37, 381, 646
BstDEI	CTNAG	6 cut(s)	117, 522, 561, 735, 780, 882
BstENI	CCTNNNNNAGG	2 cut(s)	582, 881
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	5 cut(s)	54, 364, 558, 711, 985
BstMAI	GTCTC	2 cut(s)	640, 892
BstMBI	GATC	5 cut(s)	51, 361, 555, 708, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 66, 401
BstNI	CCWGG	3 cut(s)	57, 476, 878
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	4 cut(s)	55, 474, 876, 1055
BstSFI	CTRYAG	1 cut(s)	1079
BstX2I	RGATCY	3 cut(s)	555, 708, 982
BstXI	CCANNNNNNTGG	1 cut(s)	798
BstYI	RGATCY	3 cut(s)	555, 708, 982
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	60, 93, 183
BtgZI	GCGATG	1 cut(s)	969
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 731
Cac8I	GCNNGC	3 cut(s)	37, 381, 646
CciI	TCATGA	1 cut(s)	1006
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	265
CviAII	CATG	4 cut(s)	314, 391, 1007, 1043
DdeI	CTNAG	6 cut(s)	117, 522, 561, 735, 780, 882
DpnI	GATC	5 cut(s)	53, 363, 557, 710, 984
DpnII	GATC	5 cut(s)	51, 361, 555, 708, 982
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	892
Eco57I	CTGAAG	1 cut(s)	918
EcoNI	CCTNNNNNAGG	2 cut(s)	582, 881
EcoRII	CCWGG	3 cut(s)	55, 474, 876
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	4 cut(s)	317, 394, 1010, 1046
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 695, 727
FaqI	GGGAC	1 cut(s)	1072
FatI	CATG	4 cut(s)	313, 390, 1006, 1042
FauNDI	CATATG	1 cut(s)	816
Fnu4HI	GCNGC	2 cut(s)	94, 396
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	2 cut(s)	94, 396
FspBI	CTAG	2 cut(s)	590, 977
GluI	GCNGC	2 cut(s)	94, 396
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	60, 93, 183
HapII	CCGG	1 cut(s)	1056
HgaI	GACGC	1 cut(s)	265
Hin1II	CATG	4 cut(s)	317, 394, 1010, 1046
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	4 cut(s)	325, 341, 409, 787
HpaII	CCGG	1 cut(s)	1056
HphI	GGTGA	7 cut(s)	61, 230, 236, 455, 562, 796, 928
Hpy166II	GTNNAC	3 cut(s)	130, 812, 919
Hpy188I	TCNGA	7 cut(s)	422, 562, 570, 640, 694, 856, 898
Hpy188III	TCNNGA	7 cut(s)	338, 365, 614, 659, 773, 986, 1007
Hpy8I	GTNNAC	3 cut(s)	130, 812, 919
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	476, 508, 665
HpyCH4III	ACNGT	3 cut(s)	698, 726, 1053
HpyCH4V	TGCA	7 cut(s)	4, 248, 383, 446, 648, 968, 1081
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 66, 401
HpyF3I	CTNAG	6 cut(s)	117, 522, 561, 735, 780, 882
Hsp92II	CATG	4 cut(s)	317, 394, 1010, 1046
Kzo9I	GATC	5 cut(s)	51, 361, 555, 708, 982
LmnI	GCTCC	4 cut(s)	520, 879, 935, 1040
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	2 cut(s)	590, 977
MaeIII	GTNAC	3 cut(s)	28, 428, 493
MalI	GATC	5 cut(s)	53, 363, 557, 710, 984
MboI	GATC	5 cut(s)	51, 361, 555, 708, 982
MboII	GAAGA	5 cut(s)	230, 565, 629, 911, 1022
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	3 cut(s)	555, 708, 982
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	5 cut(s)	265, 300, 528, 804, 970
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	166
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	3 cut(s)	102, 824, 1026
MslI	CAYNNNNRTG	2 cut(s)	243, 1066
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	794
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	1 cut(s)	1056
MspR9I	CCNGG	4 cut(s)	57, 476, 878, 1057
MunI	CAATTG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	970, 1073
MvaI	CCWGG	3 cut(s)	57, 476, 878
MwoI	GCNNNNNNNGC	3 cut(s)	10, 66, 401
NciI	CCSGG	1 cut(s)	1057
NdeI	CATATG	1 cut(s)	816
NdeII	GATC	5 cut(s)	51, 361, 555, 708, 982
NlaIII	CATG	4 cut(s)	317, 394, 1010, 1046
NlaIV	GGNNCC	4 cut(s)	516, 908, 937, 984
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	317
PagI	TCATGA	1 cut(s)	1006
PctI	GAATGC	2 cut(s)	970, 1073
PfeI	GAWTC	3 cut(s)	325, 409, 787
PfoI	TCCNGGA	1 cut(s)	1055
PkrI	GCNGC	2 cut(s)	95, 397
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	3 cut(s)	55, 474, 876
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	3 cut(s)	55, 474, 876
PspN4I	GGNNCC	4 cut(s)	516, 908, 937, 984
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	1083
PsuI	RGATCY	3 cut(s)	555, 708, 982
PvuII	CAGCTG	1 cut(s)	794
RseI	CAYNNNNRTG	2 cut(s)	243, 1066
SaqAI	TTAA	3 cut(s)	102, 824, 1026
SatI	GCNGC	2 cut(s)	94, 396
Sau3AI	GATC	5 cut(s)	51, 361, 555, 708, 982
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	4 cut(s)	57, 476, 878, 1057
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	1079
SmiMI	CAYNNNNRTG	2 cut(s)	243, 1066
SmlI	CTYRAG	2 cut(s)	101, 338
SmoI	CTYRAG	2 cut(s)	101, 338
Sse9I	AATT	5 cut(s)	265, 300, 528, 804, 970
SsiI	CCGC	3 cut(s)	94, 395, 706
SspMI	CTAG	2 cut(s)	590, 977
StyD4I	CCNGG	4 cut(s)	55, 474, 876, 1055
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	698, 726, 1053
TaqI	TCGA	2 cut(s)	19, 124
TasI	AATT	5 cut(s)	265, 300, 528, 804, 970
TauI	GCSGC	2 cut(s)	96, 398
TfiI	GAWTC	3 cut(s)	325, 409, 787
Tru1I	TTAA	3 cut(s)	102, 824, 1026
Tru9I	TTAA	3 cut(s)	102, 824, 1026
TscAI	CASTG	2 cut(s)	37, 731
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	61, 873, 1023
TspRI	CASTG	2 cut(s)	37, 731
Vha464I	CTTAAG	1 cut(s)	101
XagI	CCTNNNNNAGG	2 cut(s)	582, 881
XapI	RAATTY	2 cut(s)	265, 970
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XspI	CTAG	2 cut(s)	590, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.