FvH4_4g27370

GDP-L-galactose phosphorylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
28396835 .. 28399972
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27370.t1

Sequence Viewer

Length: 1341 bp
ATGATGCTGAAGATCAAGAGGGTTCCTACTGTGGTTTCGAATTACCAGAAAGATGAGGCGGATGAGGGCCGCCGAGCTGGGGGCTGTGGCCGCAACTGTCTTAACAAATGTTGCATTTCAGGAGCAAAACTTCCATTGTATGCTTTTAAGAAGCAAAACAACTCACCTGGTGAGAAGGGGTTTTCCGGACATGAGAAGCAAGACGCTCCTGTTGCTTTCCTTGACTCATTGGTTCTTGGAGAGTGGGAGGATCGCATGCTGAAAGGGCTATTTCGATATGATGTCACTGCCTGCGAGACTAAGGTGATTCCGGGCCAGTTTGGCTTCATTGCACAGCTCAATGAGGGCCGCCACCTTAAGAAGCGACCAACCGAGTTTCGAGTTGATAAGGTTCTCCAAGCTTTTGATGGTAGCAAGTTCAACTTCACTAAAGTTGGCCAAGAGGAGGTTCTGTTCCAGTTTGAAGCAAGTGAAGATGGTGAAGTTCAGTTTCACCCTAATGCACCTATTGATGTGGAAAATTCTCCGAATGTTGTTGCGATCAATGTCAGTCCAATTGAATACGGGCATGTGCTGTTAATACCTCGTATTCTTGAGTCTTTGCCTCAAAGGATTGATCGTGAAAGCTTCTTGCTTGCACTTCACATGGCAGCAGAAGCAGGGAATCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAATCACCTTCACTTCCAGGCTTACTACCTTGCCGTGACCTTTCCCATTGAGAAGGCTCCTACTAAAAAGATAACCAGTTTGGATGGTGGGGTGAGGATCTCTGAGCTTCTGAACTATCCTGTTAGAGGTCTGGTTTTTGAGGGTGGAAATACTCTGGAAGATTTGTCAAACTCTGTCTCTGATGCCTGCATTTGCCTTCAAGAGAACAACATTCCTTACAATGTCCTCATATCGGATTGTGGAAAGCGGATCTTTCTCTTACCACAGTGTTATGCTGAGAAACAAGCTCTTGGGGAAGTTAGGGCAGAGCTTTTGGATACTCAGGTGAATCCAGCTGTGTGGGAAATTAGTGGACATATGGTGTTAAAGAGGAGGAAGGACTATGATGAGGCATCTGATGAAAATGCTTGGAAGCTCCTTGCCGAGGTCTCTCTTTCTGAGGAGAGGTTCCAAGAGGTGAATGCTCTTATATTTGGAGCCATTGCTTCTGGTGTTGATGATGGGAATGCAAATTTACTAGAGGATCCAGATGTCAAGCCTCGCTCTCATGATGAAGTGAATGCCATTAACAAAAGCTCCCATCATGCTATGGTGTCCGGGACACAGGAATGCCTTGTTCTGCAGTAA

Protein Analysis

447

Amino Acids

49.62

Weight (kDa)

5.36

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPGP1_N PF26217 74 - 246 1.8e-76 GDPGP1-like, N-terminal domain
GDPGP1_C PF26216 253 - 400 1.3e-70 GDPGP1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 5 cut(s) 59, 70, 91, 349, 961
AclWI GGATC 5 cut(s) 258, 818, 971, 1232, 1245
AcoI YGGCCR 2 cut(s) 88, 436
AcsI RAATTY 2 cut(s) 520, 1225
AcuI CTGAAG 1 cut(s) 29
AdeI CACNNNGTG 1 cut(s) 170
AfiI CCNNNNNNNGG 5 cut(s) 79, 445, 839, 946, 1138
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 4 cut(s) 421, 464, 560, 914
AjnI CCWGG 2 cut(s) 166, 729
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
Alw26I GTCTC 3 cut(s) 290, 895, 1147
AlwI GGATC 5 cut(s) 258, 818, 971, 1232, 1245
Aor13HI TCCGGA 1 cut(s) 185
AoxI GGCC 5 cut(s) 67, 88, 313, 346, 436
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 2 cut(s) 520, 1225
AspS9I GGNCC 3 cut(s) 67, 313, 346
AsuC2I CCSGG 2 cut(s) 312, 1312
AsuHPI GGTGA 9 cut(s) 156, 182, 316, 485, 491, 710, 817, 1051, 1183
AsuII TTCGAA 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 1023, 1056
BalI TGGCCA 1 cut(s) 438
BamHI GGATCC 1 cut(s) 1237
BbvI GCAGC 1 cut(s) 662
BccI CCATC 6 cut(s) 401, 470, 719, 791, 1208, 1302
BceAI ACGGC 1 cut(s) 731
BciT130I CCWGG 2 cut(s) 168, 731
BciVI GTATCC 1 cut(s) 1024
BcnI CCSGG 2 cut(s) 312, 1312
BcoDI GTCTC 3 cut(s) 290, 895, 1147
BfaI CTAG 1 cut(s) 1232
BfmI CTRYAG 1 cut(s) 1334
BfrI CTTAAG 1 cut(s) 356
BfuI GTATCC 1 cut(s) 1024
BglI GCCNNNNNGGC 1 cut(s) 321
BisI GCNGC 4 cut(s) 70, 91, 349, 651
BlsI GCNGC 4 cut(s) 71, 92, 350, 652
Bme1390I CCNGG 4 cut(s) 168, 312, 731, 1312
BmgT120I GGNCC 3 cut(s) 67, 313, 346
BmiI GGNNCC 5 cut(s) 24, 771, 1163, 1192, 1239
BmrFI CCNGG 4 cut(s) 168, 312, 731, 1312
BmsI GCATC 2 cut(s) 886, 1115
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 614
BpuMI CCSGG 2 cut(s) 312, 1312
BsaI GGTCTC 1 cut(s) 1147
BsaJI CCNNGG 1 cut(s) 1137
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 1274, 1304
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 445, 839, 946, 1138
Bse1I ACTGG 3 cut(s) 316, 457, 789
Bse3DI GCAATG 2 cut(s) 327, 1194
BseAI TCCGGA 1 cut(s) 185
BseBI CCWGG 2 cut(s) 168, 731
BseDI CCNNGG 1 cut(s) 1137
BseGI GGATG 2 cut(s) 67, 802
BseLI CCNNNNNNNGG 5 cut(s) 79, 445, 839, 946, 1138
BseMI GCAATG 2 cut(s) 327, 1194
BseMII CTCAG 4 cut(s) 807, 981, 1049, 1143
BseNI ACTGG 3 cut(s) 316, 457, 789
BseRI GAGGAG 3 cut(s) 458, 1099, 1169
BseXI GCAGC 1 cut(s) 662
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 5 cut(s) 69, 90, 315, 348, 438
BsiSI CCGG 3 cut(s) 186, 311, 1311
BslFI GGGAC 1 cut(s) 1327
BslI CCNNNNNNNGG 5 cut(s) 79, 445, 839, 946, 1138
BsmAI GTCTC 3 cut(s) 290, 895, 1147
BsmFI GGGAC 1 cut(s) 1327
BsmI GAATGC 4 cut(s) 1180, 1225, 1279, 1328
BsnI GGCC 5 cut(s) 69, 90, 315, 348, 438
Bso31I GGTCTC 1 cut(s) 1147
Bsp119I TTCGAA 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 7 cut(s) 12, 250, 540, 616, 810, 963, 1237
BspACI CCGC 5 cut(s) 59, 70, 91, 349, 961
BspANI GGCC 5 cut(s) 69, 90, 315, 348, 438
BspCNI CTCAG 4 cut(s) 808, 982, 1048, 1144
BspEI TCCGGA 1 cut(s) 185
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 5 cut(s) 24, 771, 1163, 1192, 1239
BspMAI CTGCAG 1 cut(s) 1338
BspPI GGATC 5 cut(s) 258, 818, 971, 1232, 1245
BspT104I TTCGAA 1 cut(s) 38
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 1147
BsrDI GCAATG 2 cut(s) 327, 1194
BsrI ACTGG 3 cut(s) 316, 457, 789
BssECI CCNNGG 1 cut(s) 1137
BssMI GATC 7 cut(s) 12, 250, 540, 616, 810, 963, 1237
Bst2UI CCWGG 2 cut(s) 168, 731
Bst4CI ACNGT 3 cut(s) 31, 98, 981
BstAFI CTTAAG 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 4 cut(s) 257, 292, 636, 901
BstDEI CTNAG 5 cut(s) 300, 816, 990, 1035, 1152
BstENI CCTNNNNNAGG 2 cut(s) 837, 1136
BstF5I GGATG 2 cut(s) 67, 802
BstKTI GATC 7 cut(s) 15, 253, 543, 619, 813, 966, 1240
BstMAI GTCTC 3 cut(s) 290, 895, 1147
BstMBI GATC 7 cut(s) 12, 250, 540, 616, 810, 963, 1237
BstMWI GCNNNNNNNGC 5 cut(s) 90, 212, 265, 321, 656
BstNI CCWGG 2 cut(s) 168, 731
BstNSI RCATGY 2 cut(s) 259, 572
BstSCI CCNGG 4 cut(s) 166, 310, 729, 1310
BstSFI CTRYAG 1 cut(s) 1334
BstV1I GCAGC 1 cut(s) 662
BstX2I RGATCY 3 cut(s) 810, 963, 1237
BstXI CCANNNNNNTGG 1 cut(s) 1053
BstYI RGATCY 3 cut(s) 810, 963, 1237
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 5 cut(s) 69, 90, 315, 348, 438
BtsCI GGATG 2 cut(s) 67, 802
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 986
Cac8I GCNNGC 4 cut(s) 257, 292, 636, 901
CciI TCATGA 1 cut(s) 1261
Cfr13I GGNCC 3 cut(s) 67, 313, 346
CseI GACGC 1 cut(s) 212
CsiI ACCWGGT 1 cut(s) 166
CviAII CATG 6 cut(s) 191, 256, 569, 646, 1262, 1298
DdeI CTNAG 5 cut(s) 300, 816, 990, 1035, 1152
DpnI GATC 7 cut(s) 14, 252, 542, 618, 812, 965, 1239
DpnII GATC 7 cut(s) 12, 250, 540, 616, 810, 963, 1237
DraIII CACNNNGTG 1 cut(s) 170
EaeI YGGCCR 2 cut(s) 88, 436
EciI GGCGGA 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 1147
Eco57I CTGAAG 1 cut(s) 29
EcoNI CCTNNNNNAGG 2 cut(s) 837, 1136
EcoRII CCWGG 2 cut(s) 166, 729
FaeI CATG 6 cut(s) 194, 259, 572, 649, 1265, 1301
FalI AAGNNNNNCTT 4 cut(s) 407, 439, 950, 982
FaqI GGGAC 1 cut(s) 1327
FatI CATG 6 cut(s) 190, 255, 568, 645, 1261, 1297
FauNDI CATATG 1 cut(s) 1071
Fnu4HI GCNGC 4 cut(s) 70, 91, 349, 651
FokI GGATG 2 cut(s) 74, 809
Fsp4HI GCNGC 4 cut(s) 70, 91, 349, 651
FspBI CTAG 1 cut(s) 1232
GluI GCNGC 4 cut(s) 70, 91, 349, 651
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 5 cut(s) 69, 90, 315, 348, 438
HapII CCGG 3 cut(s) 186, 311, 1311
HgaI GACGC 1 cut(s) 212
Hin1II CATG 6 cut(s) 194, 259, 572, 649, 1265, 1301
HindIII AAGCTT 2 cut(s) 399, 625
HinfI GANTC 5 cut(s) 224, 307, 596, 664, 1042
HpaII CCGG 3 cut(s) 186, 311, 1311
HphI GGTGA 9 cut(s) 156, 182, 316, 485, 491, 710, 817, 1051, 1183
Hpy166II GTNNAC 1 cut(s) 1067
Hpy188I TCNGA 8 cut(s) 528, 677, 817, 825, 895, 949, 1111, 1153
Hpy188III TCNNGA 9 cut(s) 16, 120, 186, 593, 620, 869, 914, 1241, 1262
Hpy8I GTNNAC 1 cut(s) 1067
HpyAV CCTTC 5 cut(s) 169, 731, 760, 920, 1084
HpyCH4III ACNGT 3 cut(s) 31, 98, 981
HpyCH4V TGCA 8 cut(s) 114, 332, 503, 638, 701, 903, 1223, 1336
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 212, 265, 321, 656
HpyF3I CTNAG 5 cut(s) 300, 816, 990, 1035, 1152
Hsp92II CATG 6 cut(s) 194, 259, 572, 649, 1265, 1301
Kpn2I TCCGGA 1 cut(s) 185
Kzo9I GATC 7 cut(s) 12, 250, 540, 616, 810, 963, 1237
LmnI GCTCC 6 cut(s) 122, 211, 775, 1134, 1190, 1295
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 2 cut(s) 886, 1115
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 1 cut(s) 1232
MaeIII GTNAC 3 cut(s) 283, 683, 748
MalI GATC 7 cut(s) 14, 252, 542, 618, 812, 965, 1239
MboI GATC 7 cut(s) 12, 250, 540, 616, 810, 963, 1237
MboII GAAGA 3 cut(s) 22, 485, 884
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 3 cut(s) 810, 963, 1237
MlsI TGGCCA 1 cut(s) 438
MluCI AATT 5 cut(s) 40, 520, 555, 1059, 1225
MluNI TGGCCA 1 cut(s) 438
MlyI GAGTC 2 cut(s) 218, 605
Mox20I TGGCCA 1 cut(s) 438
MroI TCCGGA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 438
MseI TTAA 6 cut(s) 102, 147, 357, 578, 1079, 1281
MslI CAYNNNNRTG 2 cut(s) 498, 1321
Msp20I TGGCCA 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 1049
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 3 cut(s) 186, 311, 1311
MspR9I CCNGG 4 cut(s) 168, 312, 731, 1312
MunI CAATTG 1 cut(s) 555
Mva1269I GAATGC 4 cut(s) 1180, 1225, 1279, 1328
MvaI CCWGG 2 cut(s) 168, 731
MwoI GCNNNNNNNGC 5 cut(s) 90, 212, 265, 321, 656
NciI CCSGG 2 cut(s) 312, 1312
NdeI CATATG 1 cut(s) 1071
NdeII GATC 7 cut(s) 12, 250, 540, 616, 810, 963, 1237
NlaIII CATG 6 cut(s) 194, 259, 572, 649, 1265, 1301
NlaIV GGNNCC 5 cut(s) 24, 771, 1163, 1192, 1239
NmeAIII GCCGAG 2 cut(s) 98, 1162
NmuCI GTSAC 2 cut(s) 283, 748
NspI RCATGY 2 cut(s) 259, 572
NspV TTCGAA 1 cut(s) 38
PaeI GCATGC 1 cut(s) 259
PagI TCATGA 1 cut(s) 1261
PctI GAATGC 4 cut(s) 1180, 1225, 1279, 1328
PfeI GAWTC 3 cut(s) 307, 664, 1042
PfoI TCCNGGA 1 cut(s) 1310
PkrI GCNGC 4 cut(s) 71, 92, 350, 652
PleI GAGTC 2 cut(s) 218, 604
PpsI GAGTC 2 cut(s) 218, 604
Psp6I CCWGG 2 cut(s) 166, 729
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 166, 729
PspN4I GGNNCC 5 cut(s) 24, 771, 1163, 1192, 1239
PspPI GGNCC 3 cut(s) 67, 313, 346
PstI CTGCAG 1 cut(s) 1338
PsuI RGATCY 3 cut(s) 810, 963, 1237
PvuII CAGCTG 1 cut(s) 1049
RseI CAYNNNNRTG 2 cut(s) 498, 1321
SaqAI TTAA 6 cut(s) 102, 147, 357, 578, 1079, 1281
SatI GCNGC 4 cut(s) 70, 91, 349, 651
Sau3AI GATC 7 cut(s) 12, 250, 540, 616, 810, 963, 1237
Sau96I GGNCC 3 cut(s) 67, 313, 346
SchI GAGTC 2 cut(s) 218, 605
ScrFI CCNGG 4 cut(s) 168, 312, 731, 1312
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 2 cut(s) 886, 1115
SfcI CTRYAG 1 cut(s) 1334
SfuI TTCGAA 1 cut(s) 38
SmiMI CAYNNNNRTG 2 cut(s) 498, 1321
SmlI CTYRAG 2 cut(s) 356, 593
SmoI CTYRAG 2 cut(s) 356, 593
SphI GCATGC 1 cut(s) 259
Sse9I AATT 5 cut(s) 40, 520, 555, 1059, 1225
SsiI CCGC 5 cut(s) 59, 70, 91, 349, 961
SspMI CTAG 1 cut(s) 1232
StyD4I CCNGG 4 cut(s) 166, 310, 729, 1310
TaaI ACNGT 3 cut(s) 31, 98, 981
TaqI TCGA 3 cut(s) 38, 274, 379
TasI AATT 5 cut(s) 40, 520, 555, 1059, 1225
TauI GCSGC 3 cut(s) 72, 93, 351
TfiI GAWTC 3 cut(s) 307, 664, 1042
Tru1I TTAA 6 cut(s) 102, 147, 357, 578, 1079, 1281
Tru9I TTAA 6 cut(s) 102, 147, 357, 578, 1079, 1281
TscAI CASTG 2 cut(s) 292, 986
TseFI GTSAC 2 cut(s) 283, 748
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 2 cut(s) 283, 748
TspDTI ATGAA 3 cut(s) 316, 1128, 1281
TspRI CASTG 2 cut(s) 292, 986
Vha464I CTTAAG 1 cut(s) 356
XagI CCTNNNNNAGG 2 cut(s) 837, 1136
XapI RAATTY 2 cut(s) 520, 1225
XceI RCATGY 2 cut(s) 259, 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XspI CTAG 1 cut(s) 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.