Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Reverse (-)

13554604 .. 13557915

Gene Structure 3312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGATGCAGCAGCCACCTCCAGCTTCCAACGGTGCTGCAACAGGGCCAGGGCAGATTCCTTCCGACCAACAAGCTTACCTCCAGCAGCAGCAGTCGTGGATGATGCAGCACCAGCAGCAACAACAAGGTCAGCCGCCTGCAGGATGGAATCAGCAGTCTGCACCGTCTTCTGGTCAACCACAGCAGCAGCAGTATGGTGGTGGTGGATCTCAGAATCCAGGATCAGCTGGTGAGATCCGGTCCCTGTGGATCGGTGACTTGCAGCCATGGATGGATGAGAACTATCTCATGAACGTCTTTGGTCTTACTGGCGAGGCTACAGCAGCTAAAGTTATTCGCAATAAACAGAACGGATATTCAGAAGGTTATGGCTTTATTGAGTTTGTGAACCATGCTACAGCTGAGAGGAATTTACAGACTTACAATGGTGCTCCGATGCCGAGCAGTGAGCAGGCCTTCAGGTTGAACTGGGCTCAGCTTGGAGCTGGAGAGAGACGCCAGGCTGAAGGGCCTGAGCACACAGTTTTTGTTGGAGACTTGGCACCTGATGTTACCGACCACATGCTTACTGAAACGTTTAAAGCTGTGTATTCCTCTGTCAAGGGAGCTAAAGTTGTGAATGATAGGACTACTGGACGGTCCAAGGGTTATGGATTTGTCAGGTTTGCGGATGAAAGTGAGCAGATTCGTGCCATGACTGAAATGAATGGTCAATACTGCTCATCAAGGCCTATGCGTACTGGTCCTGCTGCCAACAAGAAGCCTCTTACAATGCAACCAGCTTCATATCAGAACACTCAAGGAAATTCAGGAGAAAGTGATCCAACTAACACAACAATTTTTGTTGGAGCTGTGGATCAAAGTGTAACAGAAGATGATTTGAAGTCAGTTTTTGGTCAATTTGGTGAACTAGTTCATGTGAAAATACCCGCAGGAAAACGTTGCGGATTTGTTCAATACGCCAATAGGGCATGTGCTGAGCAAGCACTTTCTGTGTTGAACGGAACACAACTTGGGGGACAAAGCATTCGTCTTTCATGGGGTCGCAGTCCTTCCAACAAACAGACTCAACCTGATCAAGCCCAGTATGGTGGTGGTGGAGGATACTATGGGTATCCTCCTCAAGGATATGAAGCATACGGATATGCACCTCCTCCTCAGGACCCTAACGCCTACTACGGTGGTTATGCTGGGGGCGGCTATGGAAACTACCAGCAGCCTGGTGGATACCAGCAGCAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

415

Amino Acids

44.97

Weight (kDa)

5.62

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	82 - 146	7.9e-09	RNA recognition motif
RRM_1	PF00076	175 - 245	5.9e-18	RNA recognition motif
RRM_1	PF00076	280 - 344	3.3e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AciI	CCGC	5 cut(s)	134, 668, 930, 945, 1197
AclI	AACGTT	2 cut(s)	575, 940
AclWI	GGATC	6 cut(s)	214, 229, 229, 257, 815, 864
AcsI	RAATTY	2 cut(s)	409, 805
AcuI	CTGAAG	2 cut(s)	442, 525
AcyI	GRCGYC	1 cut(s)	496
AfaI	GTAC	1 cut(s)	739
AfiI	CCNNNNNNNGG	3 cut(s)	140, 170, 1124
AgsI	TTSAA	4 cut(s)	466, 883, 956, 1000
AhlI	ACTAGT	1 cut(s)	910
AjnI	CCWGG	4 cut(s)	46, 217, 498, 1219
Alw21I	GWGCWC	2 cut(s)	433, 519
Alw26I	GTCTC	2 cut(s)	487, 528
AlwI	GGATC	6 cut(s)	214, 229, 229, 257, 815, 864
AoxI	GGCC	4 cut(s)	44, 453, 509, 728
ApoI	RAATTY	2 cut(s)	409, 805
ArsI	GACNNNNNNTTYG	4 cut(s)	1011, 1015, 1043, 1047
Asp700I	GAANNNNTTC	1 cut(s)	912
AspS9I	GGNCC	6 cut(s)	44, 240, 509, 639, 743, 1162
AsuHPI	GGTGA	3 cut(s)	242, 266, 917
AvaII	GGWCC	4 cut(s)	240, 639, 743, 1162
AxyI	CCTNAGG	1 cut(s)	1158
BanI	GGYRCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	433, 519
BccI	CCATC	2 cut(s)	138, 265
BciT130I	CCWGG	4 cut(s)	48, 219, 500, 1221
BciVI	GTATCC	3 cut(s)	1097, 1125, 1220
BclI	TGATCA	1 cut(s)	1075
BcoDI	GTCTC	2 cut(s)	487, 528
BcuI	ACTAGT	1 cut(s)	910
BfaI	CTAG	1 cut(s)	911
BfmI	CTRYAG	3 cut(s)	138, 318, 396
BfuI	GTATCC	3 cut(s)	1097, 1125, 1220
BglI	GCCNNNNNGGC	1 cut(s)	968
BlpI	GCTNAGC	2 cut(s)	474, 978
Bme1390I	CCNGG	4 cut(s)	48, 219, 500, 1221
Bme18I	GGWCC	4 cut(s)	240, 639, 743, 1162
BmgT120I	GGNCC	6 cut(s)	44, 240, 509, 639, 743, 1162
BmiI	GGNNCC	3 cut(s)	242, 543, 1164
BmrFI	CCNGG	4 cut(s)	48, 219, 500, 1221
BmrI	ACTGGG	2 cut(s)	478, 1078
BmsI	GCATC	2 cut(s)	93, 426
BmuI	ACTGGG	2 cut(s)	478, 1078
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	2 cut(s)	65, 507
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu1102I	GCTNAGC	2 cut(s)	474, 978
BpuEI	CTTGAG	2 cut(s)	783, 1107
BsaHI	GRCGYC	1 cut(s)	496
BsaJI	CCNNGG	3 cut(s)	47, 266, 642
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 170, 1124
Bse1I	ACTGG	5 cut(s)	313, 473, 637, 745, 1084
Bse21I	CCTNAGG	1 cut(s)	1158
BseBI	CCWGG	4 cut(s)	48, 219, 500, 1221
BseDI	CCNNGG	3 cut(s)	47, 266, 642
BseGI	GGATG	5 cut(s)	105, 149, 276, 280, 676
BseLI	CCNNNNNNNGG	3 cut(s)	140, 170, 1124
BseMII	CTCAG	6 cut(s)	224, 393, 488, 504, 969, 1172
BseNI	ACTGG	5 cut(s)	313, 473, 637, 745, 1084
BseRI	GAGGAG	3 cut(s)	1110, 1143, 1146
BseYI	CCCAGC	1 cut(s)	1190
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	4 cut(s)	46, 455, 511, 730
BshNI	GGYRCC	1 cut(s)	541
BsiHKAI	GWGCWC	2 cut(s)	433, 519
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	2 cut(s)	226, 1032
BslI	CCNNNNNNNGG	3 cut(s)	140, 170, 1124
BsmAI	GTCTC	2 cut(s)	487, 528
BsmBI	CGTCTC	1 cut(s)	487
BsmFI	GGGAC	2 cut(s)	226, 1032
BsmI	GAATGC	1 cut(s)	1026
BsnI	GGCC	4 cut(s)	46, 455, 511, 730
Bsp1286I	GDGCHC	3 cut(s)	433, 475, 519
Bsp143I	GATC	7 cut(s)	206, 221, 234, 249, 820, 856, 1075
Bsp1720I	GCTNAGC	2 cut(s)	474, 978
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	5 cut(s)	134, 668, 930, 945, 1197
BspANI	GGCC	4 cut(s)	46, 455, 511, 730
BspCNI	CTCAG	6 cut(s)	223, 394, 487, 505, 970, 1171
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	242, 543, 1164
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	6 cut(s)	214, 229, 229, 257, 815, 864
BspT107I	GGYRCC	1 cut(s)	541
BsrI	ACTGG	5 cut(s)	313, 473, 637, 745, 1084
BssECI	CCNNGG	3 cut(s)	47, 266, 642
BssMI	GATC	7 cut(s)	206, 221, 234, 249, 820, 856, 1075
BssNI	GRCGYC	1 cut(s)	496
BssT1I	CCWWGG	2 cut(s)	266, 642
Bst2UI	CCWGG	4 cut(s)	48, 219, 500, 1221
Bst4CI	ACNGT	5 cut(s)	32, 165, 523, 639, 1181
BstACI	GRCGYC	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	138, 453, 984
BstDEI	CTNAG	6 cut(s)	210, 402, 474, 513, 978, 1158
BstDSI	CCRYGG	1 cut(s)	266
BstENI	CCTNNNNNAGG	1 cut(s)	1122
BstF5I	GGATG	5 cut(s)	105, 149, 276, 280, 676
BstKTI	GATC	7 cut(s)	209, 224, 237, 252, 823, 859, 1078
BstMAI	GTCTC	2 cut(s)	487, 528
BstMBI	GATC	7 cut(s)	206, 221, 234, 249, 820, 856, 1075
BstMWI	GCNNNNNNNGC	6 cut(s)	112, 115, 323, 968, 983, 1240
BstNI	CCWGG	4 cut(s)	48, 219, 500, 1221
BstNSI	RCATGY	2 cut(s)	565, 975
BstSCI	CCNGG	4 cut(s)	46, 217, 498, 1219
BstSFI	CTRYAG	3 cut(s)	138, 318, 396
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	2 cut(s)	206, 234
BstXI	CCANNNNNNTGG	2 cut(s)	1091, 1220
BstYI	RGATCY	2 cut(s)	206, 234
Bsu36I	CCTNAGG	1 cut(s)	1158
BsuI	GTATCC	3 cut(s)	1097, 1125, 1220
BsuRI	GGCC	4 cut(s)	46, 455, 511, 730
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	5 cut(s)	105, 149, 276, 280, 676
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	3 cut(s)	138, 453, 984
CciI	TCATGA	1 cut(s)	288
Cfr13I	GGNCC	6 cut(s)	44, 240, 509, 639, 743, 1162
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	8 cut(s)	267, 289, 392, 562, 694, 917, 972, 1038
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	6 cut(s)	210, 402, 474, 513, 978, 1158
DpnI	GATC	7 cut(s)	208, 223, 236, 251, 822, 858, 1077
DpnII	GATC	7 cut(s)	206, 221, 234, 249, 820, 856, 1075
DraI	TTTAAA	1 cut(s)	580
Eco130I	CCWWGG	2 cut(s)	266, 642
Eco147I	AGGCCT	2 cut(s)	455, 730
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	4 cut(s)	240, 639, 743, 1162
Eco57I	CTGAAG	2 cut(s)	442, 525
Eco81I	CCTNAGG	1 cut(s)	1158
EcoNI	CCTNNNNNAGG	1 cut(s)	1122
EcoO109I	RGGNCCY	2 cut(s)	509, 1162
EcoRII	CCWGG	4 cut(s)	46, 217, 498, 1219
EcoT14I	CCWWGG	2 cut(s)	266, 642
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	2 cut(s)	266, 642
Esp3I	CGTCTC	1 cut(s)	487
FaeI	CATG	8 cut(s)	270, 292, 395, 565, 697, 920, 975, 1041
FaqI	GGGAC	2 cut(s)	226, 1032
FatI	CATG	8 cut(s)	266, 288, 391, 561, 693, 916, 971, 1037
FauI	CCCGC	1 cut(s)	937
FbaI	TGATCA	1 cut(s)	1075
FokI	GGATG	5 cut(s)	112, 156, 283, 287, 683
FriOI	GRGCYC	1 cut(s)	475
FspBI	CTAG	1 cut(s)	911
GsaI	CCCAGC	1 cut(s)	1194
GsuI	CTGGAG	2 cut(s)	65, 507
HaeIII	GGCC	4 cut(s)	46, 455, 511, 730
HapII	CCGG	1 cut(s)	238
HgaI	GACGC	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	496
Hin1II	CATG	8 cut(s)	270, 292, 395, 565, 697, 920, 975, 1041
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	5 cut(s)	55, 148, 214, 685, 1066
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	3 cut(s)	242, 266, 917
Hpy166II	GTNNAC	3 cut(s)	176, 388, 908
Hpy188I	TCNGA	5 cut(s)	64, 213, 361, 435, 792
Hpy188III	TCNNGA	3 cut(s)	289, 810, 1160
Hpy8I	GTNNAC	3 cut(s)	176, 388, 908
HpyAV	CCTTC	5 cut(s)	69, 356, 466, 500, 1062
HpyCH4III	ACNGT	5 cut(s)	32, 165, 523, 639, 1181
HpyCH4IV	ACGT	3 cut(s)	294, 575, 940
HpyCH4V	TGCA	8 cut(s)	7, 38, 106, 140, 161, 262, 775, 1148
HpyF10VI	GCNNNNNNNGC	6 cut(s)	112, 115, 323, 968, 983, 1240
HpyF3I	CTNAG	6 cut(s)	210, 402, 474, 513, 978, 1158
HpySE526I	ACGT	3 cut(s)	294, 575, 940
Hsp92I	GRCGYC	1 cut(s)	496
Hsp92II	CATG	8 cut(s)	270, 292, 395, 565, 697, 920, 975, 1041
Ksp22I	TGATCA	1 cut(s)	1075
Kzo9I	GATC	7 cut(s)	206, 221, 234, 249, 820, 856, 1075
LmnI	GCTCC	4 cut(s)	436, 482, 605, 848
LweI	GCATC	2 cut(s)	93, 426
MaeI	CTAG	1 cut(s)	911
MaeII	ACGT	3 cut(s)	294, 575, 940
MaeIII	GTNAC	3 cut(s)	254, 550, 865
MalI	GATC	7 cut(s)	208, 223, 236, 251, 822, 858, 1077
MboI	GATC	7 cut(s)	206, 221, 234, 249, 820, 856, 1075
MboII	GAAGA	2 cut(s)	159, 884
MflI	RGATCY	2 cut(s)	206, 234
MhlI	GDGCHC	3 cut(s)	433, 475, 519
MluCI	AATT	4 cut(s)	409, 805, 837, 899
MlyI	GAGTC	1 cut(s)	1060
MmeI	TCCRAC	6 cut(s)	51, 87, 511, 826, 848, 1080
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	1 cut(s)	579
MspA1I	CMGCKG	2 cut(s)	227, 401
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	4 cut(s)	48, 219, 500, 1221
Mva1269I	GAATGC	1 cut(s)	1026
MvaI	CCWGG	4 cut(s)	48, 219, 500, 1221
MwoI	GCNNNNNNNGC	6 cut(s)	112, 115, 323, 968, 983, 1240
NcoI	CCATGG	1 cut(s)	266
NdeII	GATC	7 cut(s)	206, 221, 234, 249, 820, 856, 1075
NlaIII	CATG	8 cut(s)	270, 292, 395, 565, 697, 920, 975, 1041
NlaIV	GGNNCC	3 cut(s)	242, 543, 1164
NmeAIII	GCCGAG	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	2 cut(s)	565, 975
PagI	TCATGA	1 cut(s)	288
PceI	AGGCCT	2 cut(s)	455, 730
PctI	GAATGC	1 cut(s)	1026
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	4 cut(s)	55, 148, 214, 685
PfoI	TCCNGGA	1 cut(s)	217
PleI	GAGTC	1 cut(s)	1060
PpsI	GAGTC	1 cut(s)	1060
PpuMI	RGGWCCY	1 cut(s)	1162
Psp1406I	AACGTT	2 cut(s)	575, 940
Psp5II	RGGWCCY	1 cut(s)	1162
Psp6I	CCWGG	4 cut(s)	46, 217, 498, 1219
PspFI	CCCAGC	1 cut(s)	1190
PspGI	CCWGG	4 cut(s)	46, 217, 498, 1219
PspN4I	GGNNCC	3 cut(s)	242, 543, 1164
PspPI	GGNCC	6 cut(s)	44, 240, 509, 639, 743, 1162
PspPPI	RGGWCCY	1 cut(s)	1162
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	2 cut(s)	206, 234
PvuII	CAGCTG	2 cut(s)	227, 401
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
SaqAI	TTAA	1 cut(s)	579
Sau3AI	GATC	7 cut(s)	206, 221, 234, 249, 820, 856, 1075
Sau96I	GGNCC	6 cut(s)	44, 240, 509, 639, 743, 1162
SbfI	CCTGCAGG	1 cut(s)	142
SchI	GAGTC	1 cut(s)	1060
ScrFI	CCNGG	4 cut(s)	48, 219, 500, 1221
SdaI	CCTGCAGG	1 cut(s)	142
SduI	GDGCHC	3 cut(s)	433, 475, 519
SfaNI	GCATC	2 cut(s)	93, 426
SfcI	CTRYAG	3 cut(s)	138, 318, 396
SinI	GGWCC	4 cut(s)	240, 639, 743, 1162
SmlI	CTYRAG	2 cut(s)	798, 1122
SmoI	CTYRAG	2 cut(s)	798, 1122
SpeI	ACTAGT	1 cut(s)	910
Sse8387I	CCTGCAGG	1 cut(s)	142
Sse9I	AATT	4 cut(s)	409, 805, 837, 899
SseBI	AGGCCT	2 cut(s)	455, 730
SsiI	CCGC	5 cut(s)	134, 668, 930, 945, 1197
SspMI	CTAG	1 cut(s)	911
StuI	AGGCCT	2 cut(s)	455, 730
StyD4I	CCNGG	4 cut(s)	46, 217, 498, 1219
StyI	CCWWGG	2 cut(s)	266, 642
TaaI	ACNGT	5 cut(s)	32, 165, 523, 639, 1181
TaiI	ACGT	3 cut(s)	297, 578, 943
TasI	AATT	4 cut(s)	409, 805, 837, 899
TauI	GCSGC	2 cut(s)	136, 1200
TfiI	GAWTC	4 cut(s)	55, 148, 214, 685
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	7 cut(s)	305, 687, 719, 774, 905, 1026, 1146
TspGWI	ACGGA	3 cut(s)	366, 1017, 1155
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	4 cut(s)	240, 639, 743, 1162
XagI	CCTNNNNNAGG	1 cut(s)	1122
XapI	RAATTY	2 cut(s)	409, 805
XceI	RCATGY	2 cut(s)	565, 975
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1091, 1220
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.