Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Reverse (-)

16649208 .. 16652942

Gene Structure 3735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATGCAGCAACCATCAGGAGGATTGGTACCACAACAGATTCCGTCCGATCCGCAGCAGCAGTACCAGCAGCAGCCGCCGCAGCAGTGGATGATGATGCCGCCACAGCAGCAGGGCCAAGCCCCTCCGGCGCAGGCTGGGTGGCCCCAGCAGGCGCCTCAGCAGTACGCGACCACACAGAATCCCGGCCCAGATGAGATCCGCTCCCTCTGGATCGGTGACTTGCTGCAGTGGATGGACGAGGCTTATATCCTCAGCTGCTTTGGTCCCACCGGAGAGGCTGTGAATGCAAAGGTTATCCGCAACAAGTTAACGGGTCTGCCAGAAGGTTATGGTTTTATTGAGTTTAGGTCTCGCGCTGCAGCTGAGCAGATCTTGCAGACATACAATGGCACTCTTATGCCTAACACGGAGCAGAATTTCAGACTGAATTGGGCAACCTTAGGTGCTGGCGAGAGACGACAGGATGATGGTCCAGATTTTACAGTTTTTGTCGGGGATTTGGCTGCTGATGTGACTGATTACATGCTTCAAGAAACATTTAGACAAAATTACCACTCTGTCAAGGGTGCAAAGGTTGTAACTGATAGGACCACAGATCGATCTAAGGGATATGGTTTTGTTAGGTTTGCTGATGAAGGTGAGCAATTGCGAGCCATGACTGAGATGAACGGCCAATTTTGTTCTACTAGGCCCATGCGGATTGGGCCTGCGGCTACTAAGAAACCAGCCAGTGGTGGACAGCAATATCAGAAAGCTTCGTATCCAAGTACTCAAGGAAATCCAGGCGAAGCTGATCGATCAAATAATACAACAATATTTGTTGGGGGTCTGGATCCCAGTGTGAATGATGACATGTTGAGGCAAGTTTTTAGCCAGTTTGGTGAGCTTGTTCATGTGAAGATACCAGTAGGCAAGCGTTGTGGTTTTGTTCAATTTGCTAACAGGTCTTGTGCGGAGCAAGCATTGGGATCGTTGAATGGAACACAATTAGGAGGACAAAGTATTCGGCTTTCATGGGGCCGCAGTCCTACAAGCAAACAGAACCAGCCAGATCAAGCACAGTGGAATGGCGCTGGTGGTGCTGGATTTTATGGATATCCACAAGGATACGATGCATATTCATATGCACCTCCTCCTGCCCAAGACCCTGCCCTGTATTACGGAGGCTATGCTGCTGGATATGGAAACTACCAGCAGCCCGGTGCATATCAACAGCAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

410

Amino Acids

45.03

Weight (kDa)

5.39

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	2 cut(s)	28, 154
AccB7I	CCANNNNNTGG	1 cut(s)	734
AccBSI	CCGCTC	1 cut(s)	204
AccII	CGCG	2 cut(s)	170, 357
AclWI	GGATC	6 cut(s)	44, 193, 221, 830, 843, 979
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	4 cut(s)	30, 65, 167, 772
AfiI	CCNNNNNNNGG	2 cut(s)	20, 734
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	3 cut(s)	533, 935, 979
AjnI	CCWGG	1 cut(s)	784
AluBI	AGCT	5 cut(s)	258, 365, 758, 794, 889
AluI	AGCT	5 cut(s)	258, 365, 758, 794, 889
Alw26I	GTCTC	2 cut(s)	357, 451
AlwI	GGATC	6 cut(s)	44, 193, 221, 830, 843, 979
AoxI	GGCC	7 cut(s)	115, 143, 187, 673, 692, 707, 1021
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	990, 1022
Asp718I	GGTACC	1 cut(s)	28
AspLEI	GCGC	4 cut(s)	133, 157, 359, 1076
AspS9I	GGNCC	9 cut(s)	115, 144, 188, 266, 473, 591, 693, 707, 1021
AsuC2I	CCSGG	2 cut(s)	186, 1203
AsuHPI	GGTGA	3 cut(s)	230, 653, 896
AvaII	GGWCC	3 cut(s)	266, 473, 591
AxyI	CCTNAGG	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	835
BanI	GGYRCC	2 cut(s)	28, 154
BbvCI	CCTCAGC	2 cut(s)	159, 254
BccI	CCATC	3 cut(s)	22, 229, 464
BceAI	ACGGC	1 cut(s)	688
BcgI	CGANNNNNNTGC	2 cut(s)	954, 988
BciT130I	CCWGG	1 cut(s)	786
BciVI	GTATCC	2 cut(s)	774, 1103
BcnI	CCSGG	2 cut(s)	186, 1203
BcoDI	GTCTC	2 cut(s)	357, 451
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	2 cut(s)	227, 360
BfoI	RGCGCY	2 cut(s)	158, 1077
BfuI	GTATCC	2 cut(s)	774, 1103
BglI	GCCNNNNNGGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	372
BlpI	GCTNAGC	1 cut(s)	366
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	3 cut(s)	186, 786, 1203
Bme18I	GGWCC	3 cut(s)	266, 473, 591
BmgT120I	GGNCC	9 cut(s)	115, 144, 188, 266, 473, 591, 693, 707, 1021
BmiI	GGNNCC	6 cut(s)	30, 146, 156, 268, 837, 1022
BmrFI	CCNGG	3 cut(s)	186, 786, 1203
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	2 cut(s)	87, 1105
BmuI	ACTGGG	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu10I	CCTNAGC	2 cut(s)	159, 254
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	759
BpuMI	CCSGG	2 cut(s)	186, 1203
Bsa29I	ATCGAT	2 cut(s)	601, 799
BsaHI	GRCGYC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 267, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 734
Bse1I	ACTGG	4 cut(s)	732, 840, 877, 908
Bse21I	CCTNAGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	786
BseCI	ATCGAT	2 cut(s)	601, 799
BseGI	GGATG	3 cut(s)	96, 240, 472
BseLI	CCNNNNNNNGG	2 cut(s)	20, 734
BseMII	CTCAG	4 cut(s)	173, 268, 357, 654
BseNI	ACTGG	4 cut(s)	732, 840, 877, 908
BseRI	GAGGAG	1 cut(s)	1125
BseYI	CCCAGC	2 cut(s)	137, 147
Bsh1236I	CGCG	2 cut(s)	170, 357
BshFI	GGCC	7 cut(s)	117, 145, 189, 675, 694, 709, 1023
BshNI	GGYRCC	2 cut(s)	28, 154
BshVI	ATCGAT	2 cut(s)	601, 799
BsiSI	CCGG	4 cut(s)	128, 186, 273, 1203
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	20, 734
BsmAI	GTCTC	2 cut(s)	357, 451
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	7 cut(s)	117, 145, 189, 675, 694, 709, 1023
Bso31I	GGTCTC	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	366
BspANI	GGCC	7 cut(s)	117, 145, 189, 675, 694, 709, 1023
BspCNI	CTCAG	4 cut(s)	172, 267, 358, 655
BspDI	ATCGAT	2 cut(s)	601, 799
BspFNI	CGCG	2 cut(s)	170, 357
BspLI	GGNNCC	6 cut(s)	30, 146, 156, 268, 837, 1022
BspMAI	CTGCAG	2 cut(s)	231, 364
BspPI	GGATC	6 cut(s)	44, 193, 221, 830, 843, 979
BspT107I	GGYRCC	2 cut(s)	28, 154
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	4 cut(s)	732, 840, 877, 908
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	487, 1065
BstACI	GRCGYC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstC8I	GCNNGC	7 cut(s)	135, 153, 451, 654, 711, 917, 963
BstDEI	CTNAG	7 cut(s)	159, 254, 366, 442, 606, 663, 720
BstF5I	GGATG	3 cut(s)	96, 240, 472
BstFNI	CGCG	2 cut(s)	170, 357
BstH2I	RGCGCY	2 cut(s)	158, 1077
BstHHI	GCGC	4 cut(s)	133, 157, 359, 1076
BstMAI	GTCTC	2 cut(s)	357, 451
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	2 cut(s)	529, 859
BstSCI	CCNGG	3 cut(s)	184, 784, 1201
BstSFI	CTRYAG	2 cut(s)	227, 360
BstUI	CGCG	2 cut(s)	170, 357
BstX2I	RGATCY	3 cut(s)	198, 372, 835
BstYI	RGATCY	3 cut(s)	198, 372, 835
Bsu15I	ATCGAT	2 cut(s)	601, 799
Bsu36I	CCTNAGG	1 cut(s)	442
BsuI	GTATCC	2 cut(s)	774, 1103
BsuRI	GGCC	7 cut(s)	117, 145, 189, 675, 694, 709, 1023
BsuTUI	ATCGAT	2 cut(s)	601, 799
BtsCI	GGATG	3 cut(s)	96, 240, 472
BtsI	GCAGTG	2 cut(s)	92, 236
BtsIMutI	CAGTG	5 cut(s)	92, 236, 739, 847, 1070
Cac8I	GCNNGC	7 cut(s)	135, 153, 451, 654, 711, 917, 963
CfoI	GCGC	4 cut(s)	133, 157, 359, 1076
Cfr13I	GGNCC	9 cut(s)	115, 144, 188, 266, 473, 591, 693, 707, 1021
ClaI	ATCGAT	2 cut(s)	601, 799
Csp6I	GTAC	4 cut(s)	29, 64, 166, 771
CspCI	CAANNNNNGTGG	4 cut(s)	904, 939, 1046, 1081
CviAII	CATG	6 cut(s)	526, 658, 697, 856, 896, 1017
CviQI	GTAC	4 cut(s)	29, 64, 166, 771
DdeI	CTNAG	7 cut(s)	159, 254, 366, 442, 606, 663, 720
DinI	GGCGCC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	673
Eco31I	GGTCTC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	1100
Eco47I	GGWCC	3 cut(s)	266, 473, 591
Eco81I	CCTNAGG	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	1100
EcoT22I	ATGCAT	1 cut(s)	1120
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	6 cut(s)	529, 661, 700, 859, 899, 1020
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	6 cut(s)	525, 657, 696, 855, 895, 1016
FauNDI	CATATG	1 cut(s)	1126
FokI	GGATG	3 cut(s)	103, 247, 479
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	4 cut(s)	132, 156, 358, 1075
GsaI	CCCAGC	2 cut(s)	141, 151
HaeII	RGCGCY	2 cut(s)	158, 1077
HaeIII	GGCC	7 cut(s)	117, 145, 189, 675, 694, 709, 1023
HapII	CCGG	4 cut(s)	128, 186, 273, 1203
HhaI	GCGC	4 cut(s)	133, 157, 359, 1076
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	6 cut(s)	529, 661, 700, 859, 899, 1020
Hin6I	GCGC	4 cut(s)	131, 155, 357, 1074
HinP1I	GCGC	4 cut(s)	131, 155, 357, 1074
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	2 cut(s)	40, 181
HpaI	GTTAAC	1 cut(s)	312
HpaII	CCGG	4 cut(s)	128, 186, 273, 1203
HphI	GGTGA	3 cut(s)	230, 653, 896
Hpy166II	GTNNAC	2 cut(s)	312, 740
Hpy188I	TCNGA	3 cut(s)	49, 425, 753
Hpy188III	TCNNGA	5 cut(s)	18, 211, 476, 533, 833
Hpy8I	GTNNAC	2 cut(s)	312, 740
HpyAV	CCTTC	2 cut(s)	320, 632
HpyCH4III	ACNGT	2 cut(s)	487, 1065
HpyCH4V	TGCA	9 cut(s)	7, 229, 290, 362, 379, 572, 1118, 1130, 1208
HpyF3I	CTNAG	7 cut(s)	159, 254, 366, 442, 606, 663, 720
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	6 cut(s)	529, 661, 700, 859, 899, 1020
HspAI	GCGC	4 cut(s)	131, 155, 357, 1074
KasI	GGCGCC	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	32
KspAI	GTTAAC	1 cut(s)	312
LmnI	GCTCC	3 cut(s)	209, 412, 958
LweI	GCATC	2 cut(s)	87, 1105
MaeI	CTAG	1 cut(s)	690
MaeIII	GTNAC	3 cut(s)	218, 514, 580
MbiI	CCGCTC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	913
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	3 cut(s)	198, 372, 835
MluCI	AATT	7 cut(s)	418, 430, 550, 647, 677, 935, 989
Mly113I	GGCGCC	1 cut(s)	155
Mph1103I	ATGCAT	1 cut(s)	1120
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	258, 365
MspI	CCGG	4 cut(s)	128, 186, 273, 1203
MspR9I	CCNGG	3 cut(s)	186, 786, 1203
MunI	CAATTG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	2 cut(s)	170, 357
NarI	GGCGCC	1 cut(s)	155
NciI	CCSGG	2 cut(s)	186, 1203
NdeI	CATATG	1 cut(s)	1126
NlaIII	CATG	6 cut(s)	529, 661, 700, 859, 899, 1020
NlaIV	GGNNCC	6 cut(s)	30, 146, 156, 268, 837, 1022
NmuCI	GTSAC	2 cut(s)	218, 514
NsiI	ATGCAT	1 cut(s)	1120
NspI	RCATGY	2 cut(s)	529, 859
PciI	ACATGT	1 cut(s)	855
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	40, 181
PflMI	CCANNNNNTGG	1 cut(s)	734
PluTI	GGCGCC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	784
PspFI	CCCAGC	2 cut(s)	137, 147
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	6 cut(s)	30, 146, 156, 268, 837, 1022
PspPI	GGNCC	9 cut(s)	115, 144, 188, 266, 473, 591, 693, 707, 1021
PstI	CTGCAG	2 cut(s)	231, 364
PsuI	RGATCY	3 cut(s)	198, 372, 835
PvuII	CAGCTG	2 cut(s)	258, 365
RsaI	GTAC	4 cut(s)	30, 65, 167, 772
RsaNI	GTAC	4 cut(s)	29, 64, 166, 771
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	311
Sau96I	GGNCC	9 cut(s)	115, 144, 188, 266, 473, 591, 693, 707, 1021
ScaI	AGTACT	1 cut(s)	772
ScrFI	CCNGG	3 cut(s)	186, 786, 1203
SfaNI	GCATC	2 cut(s)	87, 1105
SfcI	CTRYAG	2 cut(s)	227, 360
SfoI	GGCGCC	1 cut(s)	156
SinI	GGWCC	3 cut(s)	266, 473, 591
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	774
SmoI	CTYRAG	1 cut(s)	774
Sse9I	AATT	7 cut(s)	418, 430, 550, 647, 677, 935, 989
SspDI	GGCGCC	1 cut(s)	154
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	3 cut(s)	184, 784, 1201
TaaI	ACNGT	2 cut(s)	487, 1065
TaqI	TCGA	2 cut(s)	601, 799
TasI	AATT	7 cut(s)	418, 430, 550, 647, 677, 935, 989
TatI	WGTACW	1 cut(s)	770
TauI	GCSGC	5 cut(s)	79, 82, 103, 716, 1026
TfiI	GAWTC	2 cut(s)	40, 181
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	5 cut(s)	92, 236, 739, 847, 1070
TseFI	GTSAC	2 cut(s)	218, 514
Tsp45I	GTSAC	2 cut(s)	218, 514
TspDTI	ATGAA	5 cut(s)	651, 683, 884, 1005, 1113
TspGWI	ACGGA	3 cut(s)	33, 425, 1179
TspRI	CASTG	5 cut(s)	92, 236, 739, 847, 1070
Van91I	CCANNNNNTGG	1 cut(s)	734
VpaK11BI	GGWCC	3 cut(s)	266, 473, 591
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	2 cut(s)	529, 859
XspI	CTAG	1 cut(s)	690
ZrmI	AGTACT	1 cut(s)	772
Zsp2I	ATGCAT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.