Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033883.1

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Reverse (-)

1682 .. 5089

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033883.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

tcaggaggagtcgtcccggcggatcagcagccgcagcagcagtaccagcagcaaccgccgcagcagtggatgatgatgccgccgcagcagcaacaccaagctgctgctgctgctcaggccgggtgggcccagcagcaggcggctatgcagcagcagcagcagcctcagcagtacacggccgcggcggcgagccagggctccgatgagatccgatcgctctggatcggcgacttgctcccgtggatggacgagaactacatcctcaactgcttcggtcccaccggagaggctgtgaatgcaaaggttatccgtaacaagcaaacaggactgccagaagggtatggttttattgagtttaggactcgcagcgctgctgagcaggttttgcagaactacaatggtacagtgatgcccagcactgagcagaatttccgcctcaactgggccaccctgggggctggtgaaaggcgccaggatgatggcccggactatactgtttttgttggcgatttggccgctgatgttaccgattatacccttcaagagacatttagggctcattaccactctgtgaagggtgcaaaagttgtcactgataggaccaccggacgctctaagggatatggttttgttaggtttggagatgagagtgaacagttgcgagcaatgaatgagatgaatggtcagttttgctctagcagacccatgaggattgggcctgctgctactaagaaaccagtcggtggtggacaaccttttcaaaaagctgcctacccaagttctcaaggaaatccaggcgaggctgacccaaataacacaacaatatttgttgggggtttggatcccagtgtcgatgatgaaatgttgagacaatcttttggcatgtttggtgagctagttcatgtgaagataccagttggcaagcgatgtggttttgttcaatttgctaacagagcttgtgcggagcaagcattgtcggtgatgaatggacgggtagtgggatcacaaagtgttaggctttcttggggccgtagtccttcaagcaaacagaaccagccagaacagacacagtggaatggtgctggtggtgctggattttatcaatatccccaaggatatgatgcgtatacatatgcacctcctacccaagaccctaacctgtactatggagggtatgctggctatggaaattaccagcagcctggtgcagcttaccaacagcaacagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

410

Amino Acids

45.06

Weight (kDa)

5.67

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	468
AccB7I	CCANNNNNTGG	1 cut(s)	743
AccI	GTMKAC	1 cut(s)	1127
AccII	CGCG	1 cut(s)	182
AclWI	GGATC	6 cut(s)	30, 202, 230, 836, 849, 1009
AcoI	YGGCCR	2 cut(s)	177, 513
AcsI	RAATTY	1 cut(s)	427
AcyI	GRCGYC	1 cut(s)	469
AdeI	CACNNNGTG	2 cut(s)	571, 1010
AfaI	GTAC	4 cut(s)	44, 173, 403, 1163
AfeI	AGCGCT	1 cut(s)	370
AfiI	CCNNNNNNNGG	5 cut(s)	136, 244, 442, 453, 743
AgsI	TTSAA	4 cut(s)	542, 761, 941, 1041
AjnI	CCWGG	5 cut(s)	192, 450, 471, 793, 1201
AluBI	AGCT	5 cut(s)	101, 767, 895, 956, 1211
AluI	AGCT	5 cut(s)	101, 767, 895, 956, 1211
Alw26I	GTCTC	2 cut(s)	539, 862
AlwI	GGATC	6 cut(s)	30, 202, 230, 836, 849, 1009
Aor51HI	AGCGCT	1 cut(s)	370
AoxI	GGCC	8 cut(s)	117, 126, 177, 444, 481, 513, 716, 1027
ApaI	GGGCCC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	427
AspLEI	GCGC	2 cut(s)	371, 471
AspS9I	GGNCC	8 cut(s)	126, 127, 275, 444, 482, 600, 716, 1027
AsuC2I	CCSGG	3 cut(s)	17, 121, 485
AsuHPI	GGTGA	3 cut(s)	473, 902, 991
AvaII	GGWCC	2 cut(s)	275, 600
BaeGI	GKGCMC	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	468
BanII	GRGCYC	3 cut(s)	130, 200, 559
BbvCI	CCTCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	238, 473
BceAI	ACGGC	2 cut(s)	192, 1014
BciT130I	CCWGG	5 cut(s)	194, 452, 473, 795, 1203
BcnI	CCSGG	3 cut(s)	17, 121, 485
BcoDI	GTCTC	2 cut(s)	539, 862
BfaI	CTAG	2 cut(s)	696, 896
BfoI	RGCGCY	2 cut(s)	372, 472
BfuAI	ACCTGC	1 cut(s)	370
BglI	GCCNNNNNGGC	2 cut(s)	125, 185
BlpI	GCTNAGC	1 cut(s)	375
Bme1390I	CCNGG	8 cut(s)	17, 121, 194, 452, 473, 485, 795, 1203
Bme18I	GGWCC	2 cut(s)	275, 600
BmgT120I	GGNCC	8 cut(s)	126, 127, 275, 444, 482, 600, 716, 1027
BmiI	GGNNCC	6 cut(s)	128, 199, 277, 470, 843, 1028
BmrFI	CCNGG	8 cut(s)	17, 121, 194, 452, 473, 485, 795, 1203
BmrI	ACTGGG	2 cut(s)	451, 840
BmsI	GCATC	3 cut(s)	66, 399, 1111
BmuI	ACTGGG	2 cut(s)	451, 840
Bpu10I	CCTNAGC	2 cut(s)	114, 165
Bpu1102I	GCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	768
BpuMI	CCSGG	3 cut(s)	17, 121, 485
BsaHI	GRCGYC	1 cut(s)	469
BsaJI	CCNNGG	6 cut(s)	180, 193, 239, 450, 451, 1111
BsaWI	WCCGGW	2 cut(s)	281, 605
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 276, 306
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 244, 442, 453, 743
Bse1I	ACTGG	4 cut(s)	446, 737, 846, 914
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	5 cut(s)	194, 452, 473, 795, 1203
BseDI	CCNNGG	6 cut(s)	180, 193, 239, 450, 451, 1111
BseGI	GGATG	4 cut(s)	75, 249, 258, 481
BseLI	CCNNNNNNNGG	5 cut(s)	136, 244, 442, 453, 743
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	4 cut(s)	128, 179, 366, 411
BseNI	ACTGG	4 cut(s)	446, 737, 846, 914
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	130
BseX3I	CGGCCG	1 cut(s)	177
BseYI	CCCAGC	2 cut(s)	129, 413
BsgI	GTGCAG	1 cut(s)	1227
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	2 cut(s)	180, 215
BshFI	GGCC	8 cut(s)	119, 128, 179, 446, 483, 515, 718, 1029
BshNI	GGYRCC	1 cut(s)	468
BsiEI	CGRYCG	2 cut(s)	180, 215
BsiSI	CCGG	5 cut(s)	17, 120, 282, 485, 606
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	5 cut(s)	136, 244, 442, 453, 743
BsmAI	GTCTC	2 cut(s)	539, 862
BsmFI	GGGAC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	8 cut(s)	119, 128, 179, 446, 483, 515, 718, 1029
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	3 cut(s)	130, 200, 559
Bsp143I	GATC	6 cut(s)	22, 207, 212, 222, 841, 1001
Bsp1720I	GCTNAGC	1 cut(s)	375
BspANI	GGCC	8 cut(s)	119, 128, 179, 446, 483, 515, 718, 1029
BspCNI	CTCAG	4 cut(s)	127, 178, 367, 412
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	6 cut(s)	128, 199, 277, 470, 843, 1028
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	6 cut(s)	30, 202, 230, 836, 849, 1009
BspT107I	GGYRCC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	4 cut(s)	446, 737, 846, 914
BssECI	CCNNGG	6 cut(s)	180, 193, 239, 450, 451, 1111
BssMI	GATC	6 cut(s)	22, 207, 212, 222, 841, 1001
BssNAI	GTATAC	1 cut(s)	1128
BssNI	GRCGYC	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	1111
Bst1107I	GTATAC	1 cut(s)	1128
Bst2UI	CCWGG	5 cut(s)	194, 452, 473, 795, 1203
Bst4CI	ACNGT	4 cut(s)	406, 496, 657, 1071
BstACI	GRCGYC	1 cut(s)	469
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	7 cut(s)	138, 190, 663, 720, 923, 969, 1180
BstDEI	CTNAG	6 cut(s)	114, 165, 375, 420, 615, 729
BstDSI	CCRYGG	2 cut(s)	180, 239
BstF5I	GGATG	4 cut(s)	75, 249, 258, 481
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	2 cut(s)	372, 472
BstHHI	GCGC	2 cut(s)	371, 471
BstKTI	GATC	6 cut(s)	25, 210, 215, 225, 844, 1004
BstMAI	GTCTC	2 cut(s)	539, 862
BstMBI	GATC	6 cut(s)	22, 207, 212, 222, 841, 1001
BstMCI	CGRYCG	2 cut(s)	180, 215
BstNI	CCWGG	5 cut(s)	194, 452, 473, 795, 1203
BstNSI	RCATGY	1 cut(s)	886
BstSCI	CCNGG	8 cut(s)	15, 119, 192, 450, 471, 483, 793, 1201
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	207, 841
BstXI	CCANNNNNNTGG	2 cut(s)	479, 1202
BstYI	RGATCY	2 cut(s)	207, 841
BstZ17I	GTATAC	1 cut(s)	1128
BstZI	CGGCCG	1 cut(s)	177
BsuRI	GGCC	8 cut(s)	119, 128, 179, 446, 483, 515, 718, 1029
BtgI	CCRYGG	2 cut(s)	180, 239
BtgZI	GCGATG	1 cut(s)	940
BtsCI	GGATG	4 cut(s)	75, 249, 258, 481
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	6 cut(s)	71, 411, 417, 591, 853, 1076
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	7 cut(s)	138, 190, 663, 720, 923, 969, 1180
CfoI	GCGC	2 cut(s)	371, 471
Cfr13I	GGNCC	8 cut(s)	126, 127, 275, 444, 482, 600, 716, 1027
Cfr42I	CCGCGG	1 cut(s)	183
CseI	GACGC	1 cut(s)	618
Csp6I	GTAC	4 cut(s)	43, 172, 402, 1162
CspCI	CAANNNNNGTGG	2 cut(s)	910, 945
CviAII	CATG	3 cut(s)	706, 883, 902
CviQI	GTAC	4 cut(s)	43, 172, 402, 1162
DdeI	CTNAG	6 cut(s)	114, 165, 375, 420, 615, 729
DinI	GGCGCC	1 cut(s)	470
DpnI	GATC	6 cut(s)	24, 209, 214, 224, 843, 1003
DpnII	GATC	6 cut(s)	22, 207, 212, 222, 841, 1001
DraIII	CACNNNGTG	2 cut(s)	571, 1010
EaeI	YGGCCR	2 cut(s)	177, 513
EagI	CGGCCG	1 cut(s)	177
EciI	GGCGGA	2 cut(s)	35, 422
EclXI	CGGCCG	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	1111
Eco24I	GRGCYC	3 cut(s)	130, 200, 559
Eco47I	GGWCC	2 cut(s)	275, 600
Eco47III	AGCGCT	1 cut(s)	370
Eco52I	CGGCCG	1 cut(s)	177
EcoRII	CCWGG	5 cut(s)	192, 450, 471, 793, 1201
EcoT14I	CCWWGG	1 cut(s)	1111
EcoT38I	GRGCYC	3 cut(s)	130, 200, 559
EgeI	GGCGCC	1 cut(s)	470
EheI	GGCGCC	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	1111
FaeI	CATG	3 cut(s)	709, 886, 905
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	3 cut(s)	705, 882, 901
FauNDI	CATATG	1 cut(s)	1132
FblI	GTMKAC	1 cut(s)	1127
FokI	GGATG	4 cut(s)	82, 245, 256, 488
FriOI	GRGCYC	3 cut(s)	130, 200, 559
FspBI	CTAG	2 cut(s)	696, 896
GlaI	GCGC	2 cut(s)	370, 470
GsaI	CCCAGC	2 cut(s)	133, 417
HaeII	RGCGCY	2 cut(s)	372, 472
HaeIII	GGCC	8 cut(s)	119, 128, 179, 446, 483, 515, 718, 1029
HapII	CCGG	5 cut(s)	17, 120, 282, 485, 606
HgaI	GACGC	1 cut(s)	618
HhaI	GCGC	2 cut(s)	371, 471
Hin1I	GRCGYC	1 cut(s)	469
Hin1II	CATG	3 cut(s)	709, 886, 905
Hin6I	GCGC	2 cut(s)	369, 469
HinP1I	GCGC	2 cut(s)	369, 469
HinfI	GANTC	2 cut(s)	9, 361
HpaII	CCGG	5 cut(s)	17, 120, 282, 485, 606
HphI	GGTGA	3 cut(s)	473, 902, 991
Hpy166II	GTNNAC	4 cut(s)	174, 653, 749, 1128
Hpy188I	TCNGA	2 cut(s)	202, 212
Hpy188III	TCNNGA	3 cut(s)	3, 220, 542
Hpy8I	GTNNAC	4 cut(s)	174, 653, 749, 1128
HpyAV	CCTTC	4 cut(s)	329, 548, 568, 1047
HpyCH4III	ACNGT	4 cut(s)	406, 496, 657, 1071
HpyCH4V	TGCA	6 cut(s)	148, 299, 388, 581, 1136, 1208
HpyF3I	CTNAG	6 cut(s)	114, 165, 375, 420, 615, 729
Hsp92I	GRCGYC	1 cut(s)	469
Hsp92II	CATG	3 cut(s)	709, 886, 905
HspAI	GCGC	2 cut(s)	369, 469
KasI	GGCGCC	1 cut(s)	468
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	6 cut(s)	22, 207, 212, 222, 841, 1001
LmnI	GCTCC	3 cut(s)	203, 240, 964
LweI	GCATC	3 cut(s)	66, 399, 1111
MaeI	CTAG	2 cut(s)	696, 896
MaeIII	GTNAC	3 cut(s)	311, 523, 589
MalI	GATC	6 cut(s)	24, 209, 214, 224, 843, 1003
MboI	GATC	6 cut(s)	22, 207, 212, 222, 841, 1001
MboII	GAAGA	1 cut(s)	919
MflI	RGATCY	2 cut(s)	207, 841
MhlI	GDGCHC	3 cut(s)	130, 200, 559
MluCI	AATT	3 cut(s)	427, 941, 1189
Mly113I	GGCGCC	1 cut(s)	469
MlyI	GAGTC	2 cut(s)	18, 355
MnlI	CCTC	8 cut(s)	174, 272, 280, 446, 702, 793, 1149, 1163
MspA1I	CMGCKG	2 cut(s)	182, 518
MspI	CCGG	5 cut(s)	17, 120, 282, 485, 606
MspR9I	CCNGG	8 cut(s)	17, 121, 194, 452, 473, 485, 795, 1203
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	5 cut(s)	194, 452, 473, 795, 1203
MvnI	CGCG	1 cut(s)	182
NarI	GGCGCC	1 cut(s)	469
NciI	CCSGG	3 cut(s)	17, 121, 485
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	6 cut(s)	22, 207, 212, 222, 841, 1001
NlaIII	CATG	3 cut(s)	709, 886, 905
NlaIV	GGNNCC	6 cut(s)	128, 199, 277, 470, 843, 1028
NmuCI	GTSAC	1 cut(s)	589
NspI	RCATGY	1 cut(s)	886
PasI	CCCWGGG	1 cut(s)	451
PctI	GAATGC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	743
Ple19I	CGATCG	1 cut(s)	215
PleI	GAGTC	2 cut(s)	17, 355
PluTI	GGCGCC	1 cut(s)	472
PpsI	GAGTC	2 cut(s)	17, 355
Psp6I	CCWGG	5 cut(s)	192, 450, 471, 793, 1201
PspFI	CCCAGC	2 cut(s)	129, 413
PspGI	CCWGG	5 cut(s)	192, 450, 471, 793, 1201
PspN4I	GGNNCC	6 cut(s)	128, 199, 277, 470, 843, 1028
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	8 cut(s)	126, 127, 275, 444, 482, 600, 716, 1027
PsuI	RGATCY	2 cut(s)	207, 841
PvuI	CGATCG	1 cut(s)	215
RsaI	GTAC	4 cut(s)	44, 173, 403, 1163
RsaNI	GTAC	4 cut(s)	43, 172, 402, 1162
SacII	CCGCGG	1 cut(s)	183
Sau3AI	GATC	6 cut(s)	22, 207, 212, 222, 841, 1001
Sau96I	GGNCC	8 cut(s)	126, 127, 275, 444, 482, 600, 716, 1027
SchI	GAGTC	2 cut(s)	18, 355
ScrFI	CCNGG	8 cut(s)	17, 121, 194, 452, 473, 485, 795, 1203
SduI	GDGCHC	3 cut(s)	130, 200, 559
SfaNI	GCATC	3 cut(s)	66, 399, 1111
SfiI	GGCCNNNNNGGCC	1 cut(s)	125
SfoI	GGCGCC	1 cut(s)	470
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	275, 600
SmlI	CTYRAG	1 cut(s)	783
SmoI	CTYRAG	1 cut(s)	783
Sse9I	AATT	3 cut(s)	427, 941, 1189
SspDI	GGCGCC	1 cut(s)	468
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	2 cut(s)	696, 896
StyD4I	CCNGG	8 cut(s)	15, 119, 192, 450, 471, 483, 793, 1201
StyI	CCWWGG	1 cut(s)	1111
TaaI	ACNGT	4 cut(s)	406, 496, 657, 1071
TaqI	TCGA	1 cut(s)	852
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	3 cut(s)	427, 941, 1189
TatI	WGTACW	2 cut(s)	171, 1161
TauI	GCSGC	9 cut(s)	34, 61, 82, 85, 143, 182, 185, 188, 518
TscAI	CASTG	6 cut(s)	71, 411, 424, 598, 853, 1076
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	5 cut(s)	683, 692, 873, 890, 998
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	6 cut(s)	71, 411, 424, 598, 853, 1076
Van91I	CCANNNNNTGG	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	275, 600
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	886
XmiI	GTMKAC	1 cut(s)	1127
XspI	CTAG	2 cut(s)	696, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.