Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Forward (+)

22295369 .. 22298395

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCAGCAACCACCGTCAAACGCCGCCGGAGCTGGACAGATACCATCAGGACAACAGCATTTGTGGATGATGATGCAACAGCAGCAGCAGCAGCAGCAGATGCAGTTGTCTGCGGCGCCACTAGGTCAACATCAGTACGGTATTGGATCTCAGAATCCAGGATCCGCTAGCGATGTTAAGTCGTTGTGGATCGGAGACTTGCAGCAATGGATGGACGAGAACTACATCATGAGCGTCTTTGCTCAGTCTGGCGAGGCTACATCAGCTAAAGTCATTCGTAATAAGCTGACGGGACAATCTGAAGGTTATGGATTCATTGAGTTCGTCAGCCACTCTGTAGCAGAGCGGGTTTTGCAGACTTACAATGGTGCTCCCATGCCGAGCACTGAACAGACGTTTAGGCTCAACTGGGCTCAGGCTGGGGCTGGAGAGAAACGATTCCAGACTGAAGGGCCTGACCATACCATTTTCGTAGGTGACTTGGCACCTGAGGTGACTGACTATATGCTCTCGGACACATTCAAGAATGTGTATGGGTCTGTCAAAGGGGCTAAAGTTGTGCTTGACAGGACCACTGGAAGGTCCAAGGGGTATGGGTTTGTTAGGTTTGCGGATGAAAATGAGCAGATGCGTGCCATGACTGAAATGAATGGTCAATACTGCTCGACAAGGCCTATGCGTATTGGTCCGGCTGCCAATAAGAATGCTCTTCCGATGCAACCAGCTATGTATCAAAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACAATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAATTTGGTGAACTTCTTCATGTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAGTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAGCCACAGGGCGGCTATGGTTATGCAGCTCAACCACCAACTCAAGACCCTAATGCGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

387

Amino Acids

42.32

Weight (kDa)

6.09

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	62 - 128	1e-10	RNA recognition motif
RRM_1	PF00076	156 - 225	2.3e-17	RNA recognition motif
RRM_1	PF00076	262 - 326	2.5e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	115, 484
AccBSI	CCGCTC	1 cut(s)	346
AciI	CCGC	6 cut(s)	24, 113, 165, 346, 611, 1068
AclI	AACGTT	1 cut(s)	886
AclWI	GGATC	5 cut(s)	154, 156, 169, 197, 761
AcuI	CTGAAG	2 cut(s)	321, 468
AcyI	GRCGYC	2 cut(s)	116, 917
AfaI	GTAC	2 cut(s)	137, 1115
AfiI	CCNNNNNNNGG	2 cut(s)	579, 1067
AgsI	TTSAA	2 cut(s)	523, 902
AjnI	CCWGG	2 cut(s)	157, 877
AluBI	AGCT	5 cut(s)	32, 266, 286, 725, 1085
AluI	AGCT	5 cut(s)	32, 266, 286, 725, 1085
Alw21I	GWGCWC	2 cut(s)	373, 386
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	5 cut(s)	154, 156, 169, 197, 761
AoxI	GGCC	2 cut(s)	452, 671
ArsI	GACNNNNNNTTYG	4 cut(s)	961, 992, 993, 1024
Asp700I	GAANNNNTTC	2 cut(s)	437, 858
AspLEI	GCGC	2 cut(s)	118, 1021
AspS9I	GGNCC	4 cut(s)	452, 570, 582, 686
AsuHPI	GGTGA	3 cut(s)	488, 505, 863
AsuNHI	GCTAGC	1 cut(s)	167
AvaII	GGWCC	3 cut(s)	570, 582, 686
AxyI	CCTNAGG	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	115, 484
BanII	GRGCYC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	373, 386
BbvI	GCAGC	9 cut(s)	16, 94, 97, 100, 103, 106, 214, 679, 1094
BccI	CCATC	2 cut(s)	52, 205
BciT130I	CCWGG	2 cut(s)	159, 879
BciVI	GTATCC	2 cut(s)	1031, 1040
BclI	TGATCA	1 cut(s)	1012
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	2 cut(s)	122, 168
BfmI	CTRYAG	2 cut(s)	336, 921
BfoI	RGCGCY	1 cut(s)	119
BfuI	GTATCC	2 cut(s)	1031, 1040
BglI	GCCNNNNNGGC	1 cut(s)	914
Bme1390I	CCNGG	2 cut(s)	159, 879
Bme18I	GGWCC	3 cut(s)	570, 582, 686
BmgT120I	GGNCC	4 cut(s)	452, 570, 582, 686
BmiI	GGNNCC	3 cut(s)	117, 163, 486
BmrFI	CCNGG	2 cut(s)	159, 879
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	6 cut(s)	63, 90, 618, 705, 793, 981
BmtI	GCTAGC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	418
BpmI	CTGGAG	3 cut(s)	447, 777, 861
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	726, 1083
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	2 cut(s)	116, 917
BsaJI	CCNNGG	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	2 cut(s)	579, 1067
Bse1I	ACTGG	3 cut(s)	413, 580, 1135
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	2 cut(s)	212, 1028
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	2 cut(s)	159, 879
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	5 cut(s)	72, 216, 619, 808, 972
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	2 cut(s)	579, 1067
BseMI	GCAATG	2 cut(s)	212, 1028
BseMII	CTCAG	4 cut(s)	164, 257, 428, 480
BseNI	ACTGG	3 cut(s)	413, 580, 1135
BseXI	GCAGC	9 cut(s)	16, 94, 97, 100, 103, 106, 214, 679, 1094
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	2 cut(s)	454, 673
BshNI	GGYRCC	2 cut(s)	115, 484
BsiHKAI	GWGCWC	2 cut(s)	373, 386
BsiSI	CCGG	2 cut(s)	27, 689
BslFI	GGGAC	2 cut(s)	306, 1002
BslI	CCNNNNNNNGG	2 cut(s)	579, 1067
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	2 cut(s)	306, 1002
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	454, 673
Bsp1286I	GDGCHC	3 cut(s)	373, 386, 415
Bsp143I	GATC	5 cut(s)	146, 161, 189, 766, 1012
BspACI	CCGC	6 cut(s)	24, 113, 165, 346, 611, 1068
BspANI	GGCC	2 cut(s)	454, 673
BspCNI	CTCAG	4 cut(s)	163, 256, 427, 481
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	117, 163, 486
BspMAI	CTGCAG	1 cut(s)	925
BspOI	GCTAGC	1 cut(s)	171
BspPI	GGATC	5 cut(s)	154, 156, 169, 197, 761
BspQI	GCTCTTC	1 cut(s)	714
BspT107I	GGYRCC	2 cut(s)	115, 484
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	212, 1028
BsrI	ACTGG	3 cut(s)	413, 580, 1135
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	146, 161, 189, 766, 1012
BssNI	GRCGYC	2 cut(s)	116, 917
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	2 cut(s)	159, 879
Bst4CI	ACNGT	3 cut(s)	15, 140, 1031
Bst6I	CTCTTC	1 cut(s)	714
BstACI	GRCGYC	2 cut(s)	116, 917
BstAPI	GCANNNNNTGC	2 cut(s)	100, 929
BstC8I	GCNNGC	3 cut(s)	169, 633, 930
BstDEI	CTNAG	4 cut(s)	150, 243, 414, 489
BstF5I	GGATG	5 cut(s)	72, 216, 619, 808, 972
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	118, 1021
BstKTI	GATC	5 cut(s)	149, 164, 192, 769, 1015
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	5 cut(s)	146, 161, 189, 766, 1012
BstNI	CCWGG	2 cut(s)	159, 879
BstNSI	RCATGY	1 cut(s)	932
BstSCI	CCNGG	2 cut(s)	157, 877
BstSFI	CTRYAG	2 cut(s)	336, 921
BstV1I	GCAGC	9 cut(s)	16, 94, 97, 100, 103, 106, 214, 679, 1094
BstX2I	RGATCY	2 cut(s)	146, 161
BstYI	RGATCY	2 cut(s)	146, 161
Bsu36I	CCTNAGG	1 cut(s)	489
BsuI	GTATCC	2 cut(s)	1031, 1040
BsuRI	GGCC	2 cut(s)	454, 673
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	5 cut(s)	72, 216, 619, 808, 972
BtsIMutI	CAGTG	3 cut(s)	384, 573, 1128
Cac8I	GCNNGC	3 cut(s)	169, 633, 930
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	2 cut(s)	118, 1021
Cfr13I	GGNCC	4 cut(s)	452, 570, 582, 686
CseI	GACGC	2 cut(s)	223, 906
Csp6I	GTAC	2 cut(s)	136, 1114
CviAII	CATG	5 cut(s)	229, 376, 637, 863, 929
CviQI	GTAC	2 cut(s)	136, 1114
DdeI	CTNAG	4 cut(s)	150, 243, 414, 489
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	5 cut(s)	148, 163, 191, 768, 1014
DpnII	GATC	5 cut(s)	146, 161, 189, 766, 1012
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	585
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	415
Eco47I	GGWCC	3 cut(s)	570, 582, 686
Eco57I	CTGAAG	2 cut(s)	321, 468
Eco81I	CCTNAGG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	157, 877
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	415
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	5 cut(s)	232, 379, 640, 866, 932
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	2 cut(s)	306, 1002
FatI	CATG	5 cut(s)	228, 375, 636, 862, 928
FauI	CCCGC	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	1012
FokI	GGATG	5 cut(s)	79, 223, 626, 815, 959
FriOI	GRGCYC	1 cut(s)	415
FspBI	CTAG	2 cut(s)	122, 168
GlaI	GCGC	2 cut(s)	117, 1020
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	3 cut(s)	447, 777, 861
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	454, 673
HapII	CCGG	2 cut(s)	27, 689
HgaI	GACGC	2 cut(s)	223, 906
HhaI	GCGC	2 cut(s)	118, 1021
Hin1I	GRCGYC	2 cut(s)	116, 917
Hin1II	CATG	5 cut(s)	232, 379, 640, 866, 932
Hin6I	GCGC	2 cut(s)	116, 1019
HinP1I	GCGC	2 cut(s)	116, 1019
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HinfI	GANTC	4 cut(s)	154, 312, 438, 894
HpaII	CCGG	2 cut(s)	27, 689
HphI	GGTGA	3 cut(s)	488, 505, 863
Hpy166II	GTNNAC	3 cut(s)	128, 854, 965
Hpy188I	TCNGA	6 cut(s)	153, 194, 301, 514, 714, 1012
Hpy188III	TCNNGA	6 cut(s)	48, 229, 442, 523, 800, 1100
Hpy8I	GTNNAC	3 cut(s)	128, 854, 965
HpyAV	CCTTC	3 cut(s)	296, 443, 573
HpyCH4III	ACNGT	3 cut(s)	15, 140, 1031
HpyCH4IV	ACGT	4 cut(s)	395, 886, 991, 1156
HpyCH4V	TGCA	9 cut(s)	4, 76, 103, 202, 355, 718, 923, 932, 1082
HpyF3I	CTNAG	4 cut(s)	150, 243, 414, 489
HpySE526I	ACGT	4 cut(s)	395, 886, 991, 1156
Hsp92I	GRCGYC	2 cut(s)	116, 917
Hsp92II	CATG	5 cut(s)	232, 379, 640, 866, 932
HspAI	GCGC	2 cut(s)	116, 1019
KasI	GGCGCC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	1012
Kzo9I	GATC	5 cut(s)	146, 161, 189, 766, 1012
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	3 cut(s)	29, 376, 746
Lsp1109I	GCAGC	9 cut(s)	16, 94, 97, 100, 103, 106, 214, 679, 1094
LweI	GCATC	6 cut(s)	63, 90, 618, 705, 793, 981
MaeI	CTAG	2 cut(s)	122, 168
MaeII	ACGT	4 cut(s)	395, 886, 991, 1156
MaeIII	GTNAC	4 cut(s)	476, 493, 811, 1124
MalI	GATC	5 cut(s)	148, 163, 191, 768, 1014
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	5 cut(s)	146, 161, 189, 766, 1012
MboII	GAAGA	2 cut(s)	701, 851
MflI	RGATCY	2 cut(s)	146, 161
MhlI	GDGCHC	3 cut(s)	373, 386, 415
MluCI	AATT	5 cut(s)	783, 824, 834, 845, 956
Mly113I	GGCGCC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	772
MnlI	CCTC	5 cut(s)	247, 484, 788, 885, 1062
MroXI	GAANNNNTTC	2 cut(s)	437, 858
MseI	TTAA	2 cut(s)	177, 827
MspI	CCGG	2 cut(s)	27, 689
MspR9I	CCNGG	2 cut(s)	159, 879
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	2 cut(s)	159, 879
NarI	GGCGCC	1 cut(s)	116
NdeII	GATC	5 cut(s)	146, 161, 189, 766, 1012
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	5 cut(s)	232, 379, 640, 866, 932
NlaIV	GGNNCC	3 cut(s)	117, 163, 486
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	476, 493
NspI	RCATGY	1 cut(s)	932
PaeI	GCATGC	1 cut(s)	932
PagI	TCATGA	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	714
PctI	GAATGC	1 cut(s)	709
PdmI	GAANNNNTTC	2 cut(s)	437, 858
PfeI	GAWTC	4 cut(s)	154, 312, 438, 894
PflFI	GACNNNGTC	1 cut(s)	993
PfoI	TCCNGGA	2 cut(s)	157, 877
PluTI	GGCGCC	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	886
Psp6I	CCWGG	2 cut(s)	157, 877
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	2 cut(s)	157, 877
PspN4I	GGNNCC	3 cut(s)	117, 163, 486
PspPI	GGNCC	4 cut(s)	452, 570, 582, 686
PstI	CTGCAG	1 cut(s)	925
PsuI	RGATCY	2 cut(s)	146, 161
PsyI	GACNNNGTC	1 cut(s)	993
RsaI	GTAC	2 cut(s)	137, 1115
RsaNI	GTAC	2 cut(s)	136, 1114
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	177, 827
Sau3AI	GATC	5 cut(s)	146, 161, 189, 766, 1012
Sau96I	GGNCC	4 cut(s)	452, 570, 582, 686
ScrFI	CCNGG	2 cut(s)	159, 879
SduI	GDGCHC	3 cut(s)	373, 386, 415
SfaNI	GCATC	6 cut(s)	63, 90, 618, 705, 793, 981
SfcI	CTRYAG	2 cut(s)	336, 921
SfoI	GGCGCC	1 cut(s)	117
SinI	GGWCC	3 cut(s)	570, 582, 686
SmlI	CTYRAG	2 cut(s)	741, 1098
SmoI	CTYRAG	2 cut(s)	741, 1098
SphI	GCATGC	1 cut(s)	932
Sse9I	AATT	5 cut(s)	783, 824, 834, 845, 956
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	6 cut(s)	24, 113, 165, 346, 611, 1068
SspDI	GGCGCC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	122, 168
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	2 cut(s)	157, 877
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	3 cut(s)	15, 140, 1031
TaiI	ACGT	4 cut(s)	398, 889, 994, 1159
TaqI	TCGA	1 cut(s)	665
TasI	AATT	5 cut(s)	783, 824, 834, 845, 956
TauI	GCSGC	3 cut(s)	26, 116, 1071
TfiI	GAWTC	4 cut(s)	154, 312, 438, 894
Tru1I	TTAA	2 cut(s)	177, 827
Tru9I	TTAA	2 cut(s)	177, 827
TscAI	CASTG	3 cut(s)	391, 580, 1135
TseFI	GTSAC	2 cut(s)	476, 493
Tsp45I	GTSAC	2 cut(s)	476, 493
TspDTI	ATGAA	5 cut(s)	304, 630, 662, 837, 851
TspGWI	ACGGA	1 cut(s)	965
TspRI	CASTG	3 cut(s)	391, 580, 1135
Tth111I	GACNNNGTC	1 cut(s)	993
VpaK11BI	GGWCC	3 cut(s)	570, 582, 686
XceI	RCATGY	1 cut(s)	932
XmnI	GAANNNNTTC	2 cut(s)	437, 858
XspI	CTAG	2 cut(s)	122, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.