Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Forward (+)

58179479 .. 58183003

Gene Structure 3525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGATGCAACAGCCATCAGGAGGAGTCGTCCCGGCGGATCAGCAGCCGCAGCAGCAGTACCAGCAGCAACCGCCGCAGCAGTGGATGATGATGCCGCCGCAGCAGCAACACCAAGCTGCCGCTGCTCAGGCCGCCCAGGCCGGGTGGGCCCAGCAGCAGGCGGCTATGCAGCAGCAGCAGCAACAGCCTCAGCAGTACACGGCCGCCGCGGCGAGTCAGGGCTCCGATGAGATCCGATCGCTCTGGATCGGCGACTTGCTCCAGTGGATGGACGAGAACTACATCCTCAACTGCTTCGGTCCCACAGGAGAGGTTGTAGATATTTGTGCTGTGAATGCAAAGGTTATCCGTAACAAGCAAACAGGACTGCCAGAAGGGTATGGTTTTATTGAGTTTAGGACTCGCAGTGCGGCTGAGCAGGTTTTGCAGAACTACAATGGTACAGTGATGCCCAACACCGAGCAGAATTTCCGCCTCAACTGGGCCACCCTGGGGGCTGGTGAAAGGCGCCAGGATGATGGCCCGGACTATACTGTTTTTGTTGGCGATTTGGCTGCTGATGTTACCGATTACACCCTTCAAGAGACATTTAGGGCTCATTACCACTCTGTGAAGGGTGCAAAAGTTGTCACTGATAGGACCACCGGACGCTCTAAGGGATATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGTTGCGAGCAATGAATGAGATGAATGGTCAGTTTTGCTCTAGCAGACCCATGAGGATTGGGCCTGCTGCTACTAAGAAACCAGTTGGTGGTGGACAACCATTTCAAAAAGGTTTAGAGCTTTTATATGATACATACAAGCTGCCTACCCAAGTTCTCAAGGAAATCCAGGCGAGGCTGACCCAAATAACACAACAAGCTTGTGCGGAGCAAGCATTGTCGGTGATGAATGGGCGAGTAGTGGGATCACAAAGTGTTAGACTTTCTTGGGGCCGTAGTCCTTCAAGCAAACAGAACCAGCCAGAACAGACGCAGTGGAATGGTGCTGGTAGTGCTGGATTTTATCAATATCCCCAAGGATATGATGCATATACATATGCACCTCCTACCCAAGACCCTAACCTGTACTATGGAGGGTATGCTGGATATGGAAATTACCAGCAGCCTGGTGCAGCTTACCAACAGCAACAGCAGCCTGCCTCAAGTGCTGAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

396

Amino Acids

43.9

Weight (kDa)

5.53

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	81 - 154	1.6e-08	RNA recognition motif
RRM_1	PF00076	179 - 249	7.3e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	507
AccB7I	CCANNNNNTGG	2 cut(s)	268, 782
AccII	CGCG	1 cut(s)	209
AclWI	GGATC	4 cut(s)	45, 226, 254, 946
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	466
AcyI	GRCGYC	1 cut(s)	508
AdeI	CACNNNGTG	2 cut(s)	610, 947
AfaI	GTAC	4 cut(s)	59, 197, 442, 1100
AfiI	CCNNNNNNNGG	7 cut(s)	20, 141, 157, 268, 481, 492, 782
AgsI	TTSAA	3 cut(s)	581, 800, 978
AjnI	CCWGG	5 cut(s)	135, 489, 510, 861, 1138
AluBI	AGCT	5 cut(s)	116, 814, 835, 893, 1148
AluI	AGCT	5 cut(s)	116, 814, 835, 893, 1148
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	4 cut(s)	45, 226, 254, 946
AoxI	GGCC	8 cut(s)	129, 138, 147, 201, 483, 520, 755, 964
ApaI	GGGCCC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	466
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	8 cut(s)	147, 148, 299, 483, 521, 639, 755, 964
AsuC2I	CCSGG	3 cut(s)	32, 142, 524
AsuHPI	GGTGA	2 cut(s)	512, 928
AvaII	GGWCC	2 cut(s)	299, 639
BaeGI	GKGCMC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	507
BanII	GRGCYC	3 cut(s)	151, 224, 598
BbvCI	CCTCAGC	1 cut(s)	189
BccI	CCATC	3 cut(s)	22, 262, 512
BceAI	ACGGC	2 cut(s)	216, 951
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	5 cut(s)	137, 491, 512, 863, 1140
BcnI	CCSGG	3 cut(s)	32, 142, 524
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	2 cut(s)	735, 1189
BfoI	RGCGCY	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	409
BglI	GCCNNNNNGGC	3 cut(s)	137, 146, 209
BlpI	GCTNAGC	1 cut(s)	414
Bme1390I	CCNGG	8 cut(s)	32, 137, 142, 491, 512, 524, 863, 1140
Bme18I	GGWCC	2 cut(s)	299, 639
BmgT120I	GGNCC	8 cut(s)	147, 148, 299, 483, 521, 639, 755, 964
BmiI	GGNNCC	5 cut(s)	149, 223, 301, 509, 965
BmrFI	CCNGG	8 cut(s)	32, 137, 142, 491, 512, 524, 863, 1140
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	3 cut(s)	81, 438, 1048
BmuI	ACTGGG	1 cut(s)	490
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	2 cut(s)	126, 189
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	836, 1159
BpuMI	CCSGG	3 cut(s)	32, 142, 524
BsaHI	GRCGYC	1 cut(s)	508
BsaJI	CCNNGG	5 cut(s)	135, 207, 489, 490, 1048
BsaWI	WCCGGW	1 cut(s)	644
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 300, 330
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 141, 157, 268, 481, 492, 782
Bse1I	ACTGG	3 cut(s)	262, 485, 776
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	5 cut(s)	137, 491, 512, 863, 1140
BseDI	CCNNGG	5 cut(s)	135, 207, 489, 490, 1048
BseGI	GGATG	4 cut(s)	90, 273, 282, 520
BseLI	CCNNNNNNNGG	7 cut(s)	20, 141, 157, 268, 481, 492, 782
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	3 cut(s)	140, 203, 405
BseNI	ACTGG	3 cut(s)	262, 485, 776
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	151
BseX3I	CGGCCG	1 cut(s)	201
BseYI	CCCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	1164
Bsh1236I	CGCG	1 cut(s)	209
Bsh1285I	CGRYCG	2 cut(s)	204, 239
BshFI	GGCC	8 cut(s)	131, 140, 149, 203, 485, 522, 757, 966
BshNI	GGYRCC	1 cut(s)	507
BsiEI	CGRYCG	2 cut(s)	204, 239
BsiSI	CCGG	4 cut(s)	32, 141, 524, 645
BslFI	GGGAC	2 cut(s)	14, 285
BslI	CCNNNNNNNGG	7 cut(s)	20, 141, 157, 268, 481, 492, 782
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	2 cut(s)	14, 285
BsmI	GAATGC	2 cut(s)	340, 1190
BsnI	GGCC	8 cut(s)	131, 140, 149, 203, 485, 522, 757, 966
Bsp120I	GGGCCC	1 cut(s)	147
Bsp1286I	GDGCHC	3 cut(s)	151, 224, 598
Bsp143I	GATC	5 cut(s)	37, 231, 236, 246, 938
Bsp1720I	GCTNAGC	1 cut(s)	414
BspANI	GGCC	8 cut(s)	131, 140, 149, 203, 485, 522, 757, 966
BspCNI	CTCAG	3 cut(s)	139, 202, 406
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	5 cut(s)	149, 223, 301, 509, 965
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	4 cut(s)	45, 226, 254, 946
BspT107I	GGYRCC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	3 cut(s)	262, 485, 776
BssECI	CCNNGG	5 cut(s)	135, 207, 489, 490, 1048
BssMI	GATC	5 cut(s)	37, 231, 236, 246, 938
BssNI	GRCGYC	1 cut(s)	508
BssT1I	CCWWGG	1 cut(s)	1048
Bst2UI	CCWGG	5 cut(s)	137, 491, 512, 863, 1140
Bst4CI	ACNGT	3 cut(s)	445, 535, 696
BstACI	GRCGYC	1 cut(s)	508
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstC8I	GCNNGC	5 cut(s)	159, 702, 759, 906, 1170
BstDEI	CTNAG	5 cut(s)	126, 189, 414, 654, 768
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	4 cut(s)	90, 273, 282, 520
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	5 cut(s)	40, 234, 239, 249, 941
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	5 cut(s)	37, 231, 236, 246, 938
BstMCI	CGRYCG	2 cut(s)	204, 239
BstNI	CCWGG	5 cut(s)	137, 491, 512, 863, 1140
BstSCI	CCNGG	8 cut(s)	30, 135, 140, 489, 510, 522, 861, 1138
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	2 cut(s)	518, 1139
BstYI	RGATCY	1 cut(s)	231
BstZI	CGGCCG	1 cut(s)	201
BsuRI	GGCC	8 cut(s)	131, 140, 149, 203, 485, 522, 757, 966
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	4 cut(s)	90, 273, 282, 520
BtsI	GCAGTG	3 cut(s)	86, 412, 1013
BtsIMutI	CAGTG	6 cut(s)	86, 269, 412, 450, 630, 1013
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	5 cut(s)	159, 702, 759, 906, 1170
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	8 cut(s)	147, 148, 299, 483, 521, 639, 755, 964
Cfr42I	CCGCGG	1 cut(s)	210
CseI	GACGC	2 cut(s)	657, 1012
Csp6I	GTAC	4 cut(s)	58, 196, 441, 1099
CviAII	CATG	1 cut(s)	745
CviQI	GTAC	4 cut(s)	58, 196, 441, 1099
DdeI	CTNAG	5 cut(s)	126, 189, 414, 654, 768
DinI	GGCGCC	1 cut(s)	509
DpnI	GATC	5 cut(s)	39, 233, 238, 248, 940
DpnII	GATC	5 cut(s)	37, 231, 236, 246, 938
DraIII	CACNNNGTG	2 cut(s)	610, 947
EaeI	YGGCCR	1 cut(s)	201
EagI	CGGCCG	1 cut(s)	201
EciI	GGCGGA	2 cut(s)	50, 461
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	1048
Eco24I	GRGCYC	3 cut(s)	151, 224, 598
Eco47I	GGWCC	2 cut(s)	299, 639
Eco52I	CGGCCG	1 cut(s)	201
EcoRII	CCWGG	5 cut(s)	135, 489, 510, 861, 1138
EcoT14I	CCWWGG	1 cut(s)	1048
EcoT22I	ATGCAT	1 cut(s)	1063
EcoT38I	GRGCYC	3 cut(s)	151, 224, 598
EgeI	GGCGCC	1 cut(s)	509
EheI	GGCGCC	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	1048
FaeI	CATG	1 cut(s)	748
FaqI	GGGAC	2 cut(s)	14, 285
FatI	CATG	1 cut(s)	744
FauNDI	CATATG	1 cut(s)	1069
FokI	GGATG	4 cut(s)	97, 269, 280, 527
FriOI	GRGCYC	3 cut(s)	151, 224, 598
FspBI	CTAG	2 cut(s)	735, 1189
GlaI	GCGC	1 cut(s)	509
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	8 cut(s)	131, 140, 149, 203, 485, 522, 757, 966
HapII	CCGG	4 cut(s)	32, 141, 524, 645
HgaI	GACGC	2 cut(s)	657, 1012
HhaI	GCGC	1 cut(s)	510
Hin1I	GRCGYC	1 cut(s)	508
Hin1II	CATG	1 cut(s)	748
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	3 cut(s)	24, 214, 400
HpaII	CCGG	4 cut(s)	32, 141, 524, 645
HphI	GGTGA	2 cut(s)	512, 928
Hpy166II	GTNNAC	3 cut(s)	198, 692, 788
Hpy188I	TCNGA	2 cut(s)	226, 236
Hpy188III	TCNNGA	3 cut(s)	18, 244, 581
Hpy8I	GTNNAC	3 cut(s)	198, 692, 788
HpyAV	CCTTC	4 cut(s)	368, 587, 607, 984
HpyCH4III	ACNGT	3 cut(s)	445, 535, 696
HpyCH4V	TGCA	8 cut(s)	7, 169, 338, 427, 620, 1061, 1073, 1145
HpyF3I	CTNAG	5 cut(s)	126, 189, 414, 654, 768
Hsp92I	GRCGYC	1 cut(s)	508
Hsp92II	CATG	1 cut(s)	748
HspAI	GCGC	1 cut(s)	508
KasI	GGCGCC	1 cut(s)	507
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	5 cut(s)	37, 231, 236, 246, 938
LmnI	GCTCC	3 cut(s)	227, 264, 901
LweI	GCATC	3 cut(s)	81, 438, 1048
MaeI	CTAG	2 cut(s)	735, 1189
MaeIII	GTNAC	3 cut(s)	350, 562, 628
MalI	GATC	5 cut(s)	39, 233, 238, 248, 940
MboI	GATC	5 cut(s)	37, 231, 236, 246, 938
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	3 cut(s)	151, 224, 598
MluCI	AATT	2 cut(s)	466, 1126
Mly113I	GGCGCC	1 cut(s)	508
MlyI	GAGTC	3 cut(s)	33, 223, 394
Mph1103I	ATGCAT	1 cut(s)	1063
MspA1I	CMGCKG	2 cut(s)	122, 209
MspI	CCGG	4 cut(s)	32, 141, 524, 645
MspR9I	CCNGG	8 cut(s)	32, 137, 142, 491, 512, 524, 863, 1140
Mva1269I	GAATGC	2 cut(s)	340, 1190
MvaI	CCWGG	5 cut(s)	137, 491, 512, 863, 1140
MvnI	CGCG	1 cut(s)	209
NarI	GGCGCC	1 cut(s)	508
NciI	CCSGG	3 cut(s)	32, 142, 524
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	5 cut(s)	37, 231, 236, 246, 938
NlaIII	CATG	1 cut(s)	748
NlaIV	GGNNCC	5 cut(s)	149, 223, 301, 509, 965
NmuCI	GTSAC	1 cut(s)	628
NsiI	ATGCAT	1 cut(s)	1063
PasI	CCCWGGG	1 cut(s)	490
PctI	GAATGC	2 cut(s)	340, 1190
PflMI	CCANNNNNTGG	2 cut(s)	268, 782
Ple19I	CGATCG	1 cut(s)	239
PleI	GAGTC	3 cut(s)	32, 222, 394
PluTI	GGCGCC	1 cut(s)	511
PpsI	GAGTC	3 cut(s)	32, 222, 394
Psp6I	CCWGG	5 cut(s)	135, 489, 510, 861, 1138
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	5 cut(s)	135, 489, 510, 861, 1138
PspN4I	GGNNCC	5 cut(s)	149, 223, 301, 509, 965
PspOMI	GGGCCC	1 cut(s)	147
PspPI	GGNCC	8 cut(s)	147, 148, 299, 483, 521, 639, 755, 964
PsuI	RGATCY	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	239
RsaI	GTAC	4 cut(s)	59, 197, 442, 1100
RsaNI	GTAC	4 cut(s)	58, 196, 441, 1099
SacII	CCGCGG	1 cut(s)	210
Sau3AI	GATC	5 cut(s)	37, 231, 236, 246, 938
Sau96I	GGNCC	8 cut(s)	147, 148, 299, 483, 521, 639, 755, 964
SchI	GAGTC	3 cut(s)	33, 223, 394
ScrFI	CCNGG	8 cut(s)	32, 137, 142, 491, 512, 524, 863, 1140
SduI	GDGCHC	3 cut(s)	151, 224, 598
SfaNI	GCATC	3 cut(s)	81, 438, 1048
SfiI	GGCCNNNNNGGCC	2 cut(s)	137, 146
SfoI	GGCGCC	1 cut(s)	509
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	299, 639
SmlI	CTYRAG	2 cut(s)	851, 1174
SmoI	CTYRAG	2 cut(s)	851, 1174
Sse9I	AATT	2 cut(s)	466, 1126
SspDI	GGCGCC	1 cut(s)	507
SspMI	CTAG	2 cut(s)	735, 1189
StyD4I	CCNGG	8 cut(s)	30, 135, 140, 489, 510, 522, 861, 1138
StyI	CCWWGG	1 cut(s)	1048
TaaI	ACNGT	3 cut(s)	445, 535, 696
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	466, 1126
TatI	WGTACW	2 cut(s)	195, 1098
TscAI	CASTG	6 cut(s)	86, 269, 412, 450, 637, 1013
TseFI	GTSAC	1 cut(s)	628
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	3 cut(s)	722, 731, 935
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	6 cut(s)	86, 269, 412, 450, 637, 1013
Van91I	CCANNNNNTGG	2 cut(s)	268, 782
VpaK11BI	GGWCC	2 cut(s)	299, 639
XapI	RAATTY	1 cut(s)	466
XspI	CTAG	2 cut(s)	735, 1189
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.