Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Forward (+)

35138001 .. 35141421

Gene Structure 3421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGATGCAACAGCCCTCAGGAGGAGTCGTCCCGGCGGATCAGCAGCCGCAGCAGCAGTACCAGCAGCAACCGCCGCAGCAGTGGATGATGATGCCACCGCAGCAGCAACACCAAGCTGCTGCTGCTGCTCAGGCCGGGTGGGCCCAGCAGCAGGCGGCTATGCAGCAGCAGCAGCAGCCTCAGCAGTACACGGCCGCGGCGGCGAACCAGGGCTCCGATGAGATCCGATCGCTCTGGATCGGCGACTTGCTCCCGTGGATGGACGAGAACTACATCCTCAACTGCTTCGGTCCCACCGGAGAGGCTGTGAATGCAAAGGTTATCCGTAACAAGCAAACAGGACTGCCAGAAGGGTATGGTTTTATTGAGTTTAGACTCGCAGCGCTGCTGAGCAGCACTGAGCAGAATTTCCGCCTCAACTGGGCCACCCTGGGGGCTGGTGAAAGGCGCCAGGATGATGGCCCGGACTATACTGTTTTTGTTGGCGATTTGGCAGCTGATGTTACCGATTATACCCTTCAAGAGACATTTAGGGCTCATTACCACTCTGTGAAGGGTGCAAAAGTTGTCACTGATAGGACCACCGGACGCTCTAAGGGATATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGTTGCGAGCAATGAATGAGATGAATGGTCAGTTTTGCTCTAGCAGACCCATGAGGATTGGGCCTGCTGCTACTAAGAAACCAGTTGGTGGTGGACAACCTTATCAAAAAGCTGCCTACCCAAGTTCTCAAGGAAATCCAGGCGAGGCTGACCCAAATAACACAACAATATTTGTTGGGGGTTTGGATCCCAGTGTCGATGATGAAATGTTGAGACAATCTTTTGGCATGTTTGGTGAGCTAGTTCATGTGAAGATACCAGTTGGCAAGCGATGTGGTTTTGTTCAATTTGCTAACAGAGCTTGTGCGGAGCAAGCATTGTCGGTGATGAATGGGCGAGTAGTGGGATCACAAAGTGTTAGGCTTTCTTGGGGCCGTAGTCCTTCAAGCAAACAGAACCAGCCAGAACAGACACAGTGGAATGGTGCTGGTGGTGCTGGATTTTATCAATATCCCCAAGGATATGATGCGTATACATATGCACCTCCTGCCCAAGACCCTAACCTGTACTATGGAGGGTATGCTGGATATGGAAATTACCAGCAGCCTGGTGCAGCTTACCAACAGCAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

403

Amino Acids

44.29

Weight (kDa)

5.67

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	159 - 229	7.5e-15	RNA recognition motif
RRM_1	PF00076	268 - 331	1.8e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	447
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	1106
AccII	CGCG	1 cut(s)	197
AclWI	GGATC	6 cut(s)	45, 217, 245, 815, 828, 988
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	406
AcyI	GRCGYC	1 cut(s)	448
AdeI	CACNNNGTG	2 cut(s)	550, 989
AfaI	GTAC	3 cut(s)	59, 188, 1142
AfeI	AGCGCT	1 cut(s)	384
AfiI	CCNNNNNNNGG	6 cut(s)	20, 151, 259, 421, 432, 722
AgsI	TTSAA	3 cut(s)	521, 920, 1020
AjnI	CCWGG	5 cut(s)	207, 429, 450, 772, 1180
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	6 cut(s)	116, 497, 746, 874, 935, 1190
AluI	AGCT	6 cut(s)	116, 497, 746, 874, 935, 1190
Alw26I	GTCTC	2 cut(s)	518, 841
AlwI	GGATC	6 cut(s)	45, 217, 245, 815, 828, 988
Aor51HI	AGCGCT	1 cut(s)	384
AoxI	GGCC	7 cut(s)	132, 141, 192, 423, 460, 695, 1006
ApaI	GGGCCC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	406
AspLEI	GCGC	2 cut(s)	385, 450
AspS9I	GGNCC	8 cut(s)	141, 142, 290, 423, 461, 579, 695, 1006
AsuC2I	CCSGG	3 cut(s)	32, 136, 464
AsuHPI	GGTGA	3 cut(s)	452, 881, 970
AvaII	GGWCC	2 cut(s)	290, 579
AxyI	CCTNAGG	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	447
BanII	GRGCYC	3 cut(s)	145, 215, 538
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	2 cut(s)	253, 452
BceAI	ACGGC	2 cut(s)	207, 993
BciT130I	CCWGG	5 cut(s)	209, 431, 452, 774, 1182
BcnI	CCSGG	3 cut(s)	32, 136, 464
BcoDI	GTCTC	2 cut(s)	518, 841
BfaI	CTAG	2 cut(s)	675, 875
BfoI	RGCGCY	2 cut(s)	386, 451
BglI	GCCNNNNNGGC	2 cut(s)	140, 200
BlpI	GCTNAGC	1 cut(s)	389
Bme1390I	CCNGG	8 cut(s)	32, 136, 209, 431, 452, 464, 774, 1182
Bme18I	GGWCC	2 cut(s)	290, 579
BmgT120I	GGNCC	8 cut(s)	141, 142, 290, 423, 461, 579, 695, 1006
BmiI	GGNNCC	6 cut(s)	143, 214, 292, 449, 822, 1007
BmrFI	CCNGG	8 cut(s)	32, 136, 209, 431, 452, 464, 774, 1182
BmrI	ACTGGG	2 cut(s)	430, 819
BmsI	GCATC	2 cut(s)	81, 1090
BmuI	ACTGGG	2 cut(s)	430, 819
Bpu10I	CCTNAGC	2 cut(s)	129, 180
Bpu1102I	GCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	747
BpuMI	CCSGG	3 cut(s)	32, 136, 464
BsaHI	GRCGYC	1 cut(s)	448
BsaJI	CCNNGG	6 cut(s)	195, 208, 254, 429, 430, 1090
BsaWI	WCCGGW	2 cut(s)	296, 584
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 42, 197, 227, 291, 321
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 151, 259, 421, 432, 722
Bse1I	ACTGG	4 cut(s)	425, 716, 825, 893
Bse21I	CCTNAGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	651
BseBI	CCWGG	5 cut(s)	209, 431, 452, 774, 1182
BseDI	CCNNGG	6 cut(s)	195, 208, 254, 429, 430, 1090
BseGI	GGATG	4 cut(s)	90, 264, 273, 460
BseLI	CCNNNNNNNGG	6 cut(s)	20, 151, 259, 421, 432, 722
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	5 cut(s)	30, 143, 194, 380, 390
BseNI	ACTGG	4 cut(s)	425, 716, 825, 893
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	145
BseX3I	CGGCCG	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	1206
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	2 cut(s)	195, 230
BshFI	GGCC	7 cut(s)	134, 143, 194, 425, 462, 697, 1008
BshNI	GGYRCC	1 cut(s)	447
BsiEI	CGRYCG	2 cut(s)	195, 230
BsiSI	CCGG	5 cut(s)	32, 135, 297, 464, 585
BslFI	GGGAC	2 cut(s)	14, 276
BslI	CCNNNNNNNGG	6 cut(s)	20, 151, 259, 421, 432, 722
BsmAI	GTCTC	2 cut(s)	518, 841
BsmFI	GGGAC	2 cut(s)	14, 276
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	7 cut(s)	134, 143, 194, 425, 462, 697, 1008
Bsp120I	GGGCCC	1 cut(s)	141
Bsp1286I	GDGCHC	3 cut(s)	145, 215, 538
Bsp143I	GATC	6 cut(s)	37, 222, 227, 237, 820, 980
Bsp1720I	GCTNAGC	1 cut(s)	389
BspANI	GGCC	7 cut(s)	134, 143, 194, 425, 462, 697, 1008
BspCNI	CTCAG	5 cut(s)	29, 142, 193, 381, 391
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	6 cut(s)	143, 214, 292, 449, 822, 1007
BspPI	GGATC	6 cut(s)	45, 217, 245, 815, 828, 988
BspT107I	GGYRCC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	651
BsrI	ACTGG	4 cut(s)	425, 716, 825, 893
BssECI	CCNNGG	6 cut(s)	195, 208, 254, 429, 430, 1090
BssMI	GATC	6 cut(s)	37, 222, 227, 237, 820, 980
BssNAI	GTATAC	1 cut(s)	1107
BssNI	GRCGYC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	1090
Bst1107I	GTATAC	1 cut(s)	1107
Bst2UI	CCWGG	5 cut(s)	209, 431, 452, 774, 1182
Bst4CI	ACNGT	3 cut(s)	475, 636, 1050
BstACI	GRCGYC	1 cut(s)	448
BstAPI	GCANNNNNTGC	1 cut(s)	1121
BstC8I	GCNNGC	5 cut(s)	153, 642, 699, 902, 948
BstDEI	CTNAG	7 cut(s)	16, 129, 180, 389, 399, 594, 708
BstDSI	CCRYGG	2 cut(s)	195, 254
BstF5I	GGATG	4 cut(s)	90, 264, 273, 460
BstFNI	CGCG	1 cut(s)	197
BstH2I	RGCGCY	2 cut(s)	386, 451
BstHHI	GCGC	2 cut(s)	385, 450
BstKTI	GATC	6 cut(s)	40, 225, 230, 240, 823, 983
BstMAI	GTCTC	2 cut(s)	518, 841
BstMBI	GATC	6 cut(s)	37, 222, 227, 237, 820, 980
BstMCI	CGRYCG	2 cut(s)	195, 230
BstNI	CCWGG	5 cut(s)	209, 431, 452, 774, 1182
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	8 cut(s)	30, 134, 207, 429, 450, 462, 772, 1180
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	197
BstX2I	RGATCY	2 cut(s)	222, 820
BstXI	CCANNNNNNTGG	2 cut(s)	458, 1181
BstYI	RGATCY	2 cut(s)	222, 820
BstZ17I	GTATAC	1 cut(s)	1107
BstZI	CGGCCG	1 cut(s)	192
Bsu36I	CCTNAGG	1 cut(s)	16
BsuRI	GGCC	7 cut(s)	134, 143, 194, 425, 462, 697, 1008
BtgI	CCRYGG	2 cut(s)	195, 254
BtgZI	GCGATG	1 cut(s)	919
BtsCI	GGATG	4 cut(s)	90, 264, 273, 460
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	5 cut(s)	86, 396, 570, 832, 1055
Cac8I	GCNNGC	5 cut(s)	153, 642, 699, 902, 948
CfoI	GCGC	2 cut(s)	385, 450
Cfr13I	GGNCC	8 cut(s)	141, 142, 290, 423, 461, 579, 695, 1006
Cfr42I	CCGCGG	1 cut(s)	198
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	58, 187, 1141
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviAII	CATG	3 cut(s)	685, 862, 881
CviQI	GTAC	3 cut(s)	58, 187, 1141
DdeI	CTNAG	7 cut(s)	16, 129, 180, 389, 399, 594, 708
DinI	GGCGCC	1 cut(s)	449
DpnI	GATC	6 cut(s)	39, 224, 229, 239, 822, 982
DpnII	GATC	6 cut(s)	37, 222, 227, 237, 820, 980
DraIII	CACNNNGTG	2 cut(s)	550, 989
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
EciI	GGCGGA	2 cut(s)	50, 401
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	1090
Eco24I	GRGCYC	3 cut(s)	145, 215, 538
Eco47I	GGWCC	2 cut(s)	290, 579
Eco47III	AGCGCT	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	16
EcoRII	CCWGG	5 cut(s)	207, 429, 450, 772, 1180
EcoT14I	CCWWGG	1 cut(s)	1090
EcoT38I	GRGCYC	3 cut(s)	145, 215, 538
EgeI	GGCGCC	1 cut(s)	449
EheI	GGCGCC	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	1090
FaeI	CATG	3 cut(s)	688, 865, 884
FaqI	GGGAC	2 cut(s)	14, 276
FatI	CATG	3 cut(s)	684, 861, 880
FauNDI	CATATG	1 cut(s)	1111
FblI	GTMKAC	1 cut(s)	1106
FokI	GGATG	4 cut(s)	97, 260, 271, 467
FriOI	GRGCYC	3 cut(s)	145, 215, 538
FspBI	CTAG	2 cut(s)	675, 875
GlaI	GCGC	2 cut(s)	384, 449
GsaI	CCCAGC	1 cut(s)	148
HaeII	RGCGCY	2 cut(s)	386, 451
HaeIII	GGCC	7 cut(s)	134, 143, 194, 425, 462, 697, 1008
HapII	CCGG	5 cut(s)	32, 135, 297, 464, 585
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	2 cut(s)	385, 450
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	688, 865, 884
Hin6I	GCGC	2 cut(s)	383, 448
HinP1I	GCGC	2 cut(s)	383, 448
HinfI	GANTC	2 cut(s)	24, 375
HpaII	CCGG	5 cut(s)	32, 135, 297, 464, 585
HphI	GGTGA	3 cut(s)	452, 881, 970
Hpy166II	GTNNAC	4 cut(s)	189, 632, 728, 1107
Hpy188I	TCNGA	2 cut(s)	217, 227
Hpy188III	TCNNGA	3 cut(s)	18, 235, 521
Hpy8I	GTNNAC	4 cut(s)	189, 632, 728, 1107
HpyAV	CCTTC	4 cut(s)	344, 527, 547, 1026
HpyCH4III	ACNGT	3 cut(s)	475, 636, 1050
HpyCH4V	TGCA	6 cut(s)	7, 163, 314, 560, 1115, 1187
HpyF3I	CTNAG	7 cut(s)	16, 129, 180, 389, 399, 594, 708
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	3 cut(s)	688, 865, 884
HspAI	GCGC	2 cut(s)	383, 448
KasI	GGCGCC	1 cut(s)	447
KspI	CCGCGG	1 cut(s)	198
Kzo9I	GATC	6 cut(s)	37, 222, 227, 237, 820, 980
LmnI	GCTCC	3 cut(s)	218, 255, 943
LweI	GCATC	2 cut(s)	81, 1090
MaeI	CTAG	2 cut(s)	675, 875
MaeIII	GTNAC	3 cut(s)	326, 502, 568
MalI	GATC	6 cut(s)	39, 224, 229, 239, 822, 982
MboI	GATC	6 cut(s)	37, 222, 227, 237, 820, 980
MboII	GAAGA	1 cut(s)	898
MflI	RGATCY	2 cut(s)	222, 820
MhlI	GDGCHC	3 cut(s)	145, 215, 538
MluCI	AATT	3 cut(s)	406, 920, 1168
Mly113I	GGCGCC	1 cut(s)	448
MlyI	GAGTC	2 cut(s)	33, 369
MspA1I	CMGCKG	2 cut(s)	197, 497
MspI	CCGG	5 cut(s)	32, 135, 297, 464, 585
MspR9I	CCNGG	8 cut(s)	32, 136, 209, 431, 452, 464, 774, 1182
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	5 cut(s)	209, 431, 452, 774, 1182
MvnI	CGCG	1 cut(s)	197
NarI	GGCGCC	1 cut(s)	448
NciI	CCSGG	3 cut(s)	32, 136, 464
NdeI	CATATG	1 cut(s)	1111
NdeII	GATC	6 cut(s)	37, 222, 227, 237, 820, 980
NlaIII	CATG	3 cut(s)	688, 865, 884
NlaIV	GGNNCC	6 cut(s)	143, 214, 292, 449, 822, 1007
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	865
PasI	CCCWGGG	1 cut(s)	430
PctI	GAATGC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	722
Ple19I	CGATCG	1 cut(s)	230
PleI	GAGTC	2 cut(s)	32, 369
PluTI	GGCGCC	1 cut(s)	451
PpsI	GAGTC	2 cut(s)	32, 369
Psp6I	CCWGG	5 cut(s)	207, 429, 450, 772, 1180
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	5 cut(s)	207, 429, 450, 772, 1180
PspN4I	GGNNCC	6 cut(s)	143, 214, 292, 449, 822, 1007
PspOMI	GGGCCC	1 cut(s)	141
PspPI	GGNCC	8 cut(s)	141, 142, 290, 423, 461, 579, 695, 1006
PsuI	RGATCY	2 cut(s)	222, 820
PvuI	CGATCG	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	3 cut(s)	59, 188, 1142
RsaNI	GTAC	3 cut(s)	58, 187, 1141
SacII	CCGCGG	1 cut(s)	198
Sau3AI	GATC	6 cut(s)	37, 222, 227, 237, 820, 980
Sau96I	GGNCC	8 cut(s)	141, 142, 290, 423, 461, 579, 695, 1006
SchI	GAGTC	2 cut(s)	33, 369
ScrFI	CCNGG	8 cut(s)	32, 136, 209, 431, 452, 464, 774, 1182
SduI	GDGCHC	3 cut(s)	145, 215, 538
SfaNI	GCATC	2 cut(s)	81, 1090
SfiI	GGCCNNNNNGGCC	1 cut(s)	140
SfoI	GGCGCC	1 cut(s)	449
Sfr303I	CCGCGG	1 cut(s)	198
SgrBI	CCGCGG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	290, 579
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
Sse9I	AATT	3 cut(s)	406, 920, 1168
SspDI	GGCGCC	1 cut(s)	447
SspI	AATATT	1 cut(s)	804
SspMI	CTAG	2 cut(s)	675, 875
StyD4I	CCNGG	8 cut(s)	30, 134, 207, 429, 450, 462, 772, 1180
StyI	CCWWGG	1 cut(s)	1090
TaaI	ACNGT	3 cut(s)	475, 636, 1050
TaqI	TCGA	1 cut(s)	831
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	406, 920, 1168
TatI	WGTACW	2 cut(s)	186, 1140
TauI	GCSGC	6 cut(s)	49, 76, 158, 197, 200, 203
TscAI	CASTG	5 cut(s)	86, 403, 577, 832, 1055
TseFI	GTSAC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	5 cut(s)	662, 671, 852, 869, 977
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	5 cut(s)	86, 403, 577, 832, 1055
Van91I	CCANNNNNTGG	1 cut(s)	722
VpaK11BI	GGWCC	2 cut(s)	290, 579
XapI	RAATTY	1 cut(s)	406
XceI	RCATGY	1 cut(s)	865
XmiI	GTMKAC	1 cut(s)	1106
XspI	CTAG	2 cut(s)	675, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.