Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Reverse (-)

32052328 .. 32054703

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1219600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGATGCAACAACCATCAGGAGGAGTGCACCCACAACAGGTTCCGTCGGATCCGCAGCAGCAGTACCAGCAGCAGCCGCCGCAGCAGTGGATGATGATGCCGCCACAGCAACAGGGCCAAGCCCCTCCGGCTCAGGCTGGGTGGGGCCAGCAGGCGCCTCAGCAGTACGCGACCACACAGAATCCTGGCTCCGATGAGATCCGCTCCCTCTGGATCGGTGACTTGCTGCAGTGGATGGACGAGGCTTATATCCTCAGCTGCTTTGGTCCCACCGGAGAGGCTGTGAACGCAAAGGTTATCCGCAACAAGCTTACGGGTCTGCCAGAAGGTTATGGTTTTATCGAGTTTAGGTCTCGTGCTGCGGCTGAGCAGATCTTGCAGACATACAATGGCACTCTTATGCCCAACACGGAGCAGAATTTCAGACTGAATTGGGCAACCCTAGGTGCTGGCGAGAGACGACAGGATGATGGTCCAGATTTTACTGTCTTTGTTGGGGATTTGGCTGCTGATGTGACTGATTATATGCTTCAAGAAACATTTAGACAAAATTACCATTCTGTCAAGGGTGCAAAGGTTGTAACTGATAGGACCACAGCGCGATCCAAAGGATATGGTTTTGTTAGGTTCGCTGATGAAGGTGAGCAATTGCGAGCCATGACTGAGATGAATGGCCAGTTTTGCTCTACCAGACCGATGAGGATTGGGCCTGCGGCTACTAAGAAACCAGCCAGTGGTGGACAGCAATATCAGAAAGATGTTTGTTCTACTCTTGTACTTTATGAATATCTTGCACCTTATGTTAACTATGGTTTGTCGGGTTTGCATTTATTCCATTTGCCAGTCAGGTTTACGTTTACTCCGTTTCTGAAGTTTATATATCCTTCTTTTAATACTTCGCTTGTGTTGAAGAACCAGTGTGTTTTTTCTTTGTGGATCGGTTCCACAATGTTCTCTATATTTGATAGGGTAGAATGTGCTCCCAAATTTCAGCCCTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

335

Amino Acids

37.55

Weight (kDa)

6.44

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	70 - 138	5.9e-10	RNA recognition motif
RRM_1	PF00076	163 - 232	1.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	734
AccBSI	CCGCTC	1 cut(s)	204
AccII	CGCG	2 cut(s)	170, 601
AciI	CCGC	8 cut(s)	53, 77, 80, 101, 202, 301, 362, 713
AclWI	GGATC	6 cut(s)	44, 57, 193, 221, 597, 944
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	418, 986
AcuI	CTGAAG	1 cut(s)	890
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	65, 167, 777
AfiI	CCNNNNNNNGG	3 cut(s)	20, 37, 734
AgsI	TTSAA	2 cut(s)	533, 910
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	2 cut(s)	258, 310
AluI	AGCT	2 cut(s)	258, 310
Alw21I	GWGCWC	2 cut(s)	30, 982
Alw26I	GTCTC	2 cut(s)	357, 451
Alw44I	GTGCAC	1 cut(s)	26
AlwI	GGATC	6 cut(s)	44, 57, 193, 221, 597, 944
AoxI	GGCC	4 cut(s)	115, 145, 673, 707
ApaLI	GTGCAC	1 cut(s)	26
ApeKI	GCWGC	9 cut(s)	55, 58, 70, 73, 82, 226, 258, 359, 506
ApoI	RAATTY	2 cut(s)	418, 986
AspA2I	CCTAGG	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	157, 601
AspS9I	GGNCC	6 cut(s)	115, 145, 266, 473, 591, 707
AsuHPI	GGTGA	2 cut(s)	230, 653
AvaII	GGWCC	3 cut(s)	266, 473, 591
AvrII	CCTAGG	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	675
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	154
BauI	CACGAG	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	30, 982
BbvCI	CCTCAGC	2 cut(s)	159, 254
BbvI	GCAGC	9 cut(s)	67, 70, 82, 85, 94, 213, 245, 346, 493
BccI	CCATC	3 cut(s)	22, 229, 464
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	357, 451
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	372
BlnI	CCTAGG	1 cut(s)	442
BlpI	GCTNAGC	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	3 cut(s)	266, 473, 591
BmgT120I	GGNCC	6 cut(s)	115, 145, 266, 473, 591, 707
BmiI	GGNNCC	7 cut(s)	42, 51, 146, 156, 190, 268, 943
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu10I	CCTNAGC	3 cut(s)	132, 159, 254
Bpu1102I	GCTNAGC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 297, 844, 874
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 37, 734
Bse1I	ACTGG	4 cut(s)	676, 732, 842, 916
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	3 cut(s)	96, 240, 472
BseLI	CCNNNNNNNGG	3 cut(s)	20, 37, 734
BseMII	CTCAG	5 cut(s)	146, 173, 268, 357, 654
BseNI	ACTGG	4 cut(s)	676, 732, 842, 916
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	9 cut(s)	67, 70, 82, 85, 94, 213, 245, 346, 493
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	2 cut(s)	170, 601
BshFI	GGCC	4 cut(s)	117, 147, 675, 709
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	30, 982
BsiSI	CCGG	2 cut(s)	128, 273
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	3 cut(s)	20, 37, 734
BsmAI	GTCTC	2 cut(s)	357, 451
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	4 cut(s)	117, 147, 675, 709
Bso31I	GGTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	30, 982
Bsp143I	GATC	6 cut(s)	49, 198, 213, 372, 602, 936
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	8 cut(s)	53, 77, 80, 101, 202, 301, 362, 713
BspANI	GGCC	4 cut(s)	117, 147, 675, 709
BspCNI	CTCAG	5 cut(s)	145, 172, 267, 358, 655
BspFNI	CGCG	2 cut(s)	170, 601
BspLI	GGNNCC	7 cut(s)	42, 51, 146, 156, 190, 268, 943
BspMAI	CTGCAG	1 cut(s)	231
BspPI	GGATC	6 cut(s)	44, 57, 193, 221, 597, 944
BspT107I	GGYRCC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	4 cut(s)	676, 732, 842, 916
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	6 cut(s)	49, 198, 213, 372, 602, 936
BssNI	GRCGYC	1 cut(s)	155
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	487
BstACI	GRCGYC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstC8I	GCNNGC	5 cut(s)	149, 153, 451, 654, 711
BstDEI	CTNAG	6 cut(s)	132, 159, 254, 366, 663, 720
BstF5I	GGATG	3 cut(s)	96, 240, 472
BstFNI	CGCG	2 cut(s)	170, 601
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	157, 601
BstKTI	GATC	6 cut(s)	52, 201, 216, 375, 605, 939
BstMAI	GTCTC	2 cut(s)	357, 451
BstMBI	GATC	6 cut(s)	49, 198, 213, 372, 602, 936
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 76, 79, 82, 106, 128, 287, 376, 681
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	30
BstUI	CGCG	2 cut(s)	170, 601
BstV1I	GCAGC	9 cut(s)	67, 70, 82, 85, 94, 213, 245, 346, 493
BstX2I	RGATCY	3 cut(s)	49, 198, 372
BstYI	RGATCY	3 cut(s)	49, 198, 372
BsuRI	GGCC	4 cut(s)	117, 147, 675, 709
BtsCI	GGATG	3 cut(s)	96, 240, 472
BtsI	GCAGTG	2 cut(s)	92, 236
BtsIMutI	CAGTG	4 cut(s)	92, 236, 739, 923
Cac8I	GCNNGC	5 cut(s)	149, 153, 451, 654, 711
CfoI	GCGC	2 cut(s)	157, 601
Cfr13I	GGNCC	6 cut(s)	115, 145, 266, 473, 591, 707
Csp6I	GTAC	3 cut(s)	64, 166, 776
CviAII	CATG	1 cut(s)	658
CviQI	GTAC	3 cut(s)	64, 166, 776
DdeI	CTNAG	6 cut(s)	132, 159, 254, 366, 663, 720
DinI	GGCGCC	1 cut(s)	156
DpnI	GATC	6 cut(s)	51, 200, 215, 374, 604, 938
DpnII	GATC	6 cut(s)	49, 198, 213, 372, 602, 936
EaeI	YGGCCR	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	3 cut(s)	266, 473, 591
Eco57I	CTGAAG	1 cut(s)	890
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	442
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	1 cut(s)	661
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	1 cut(s)	657
FokI	GGATG	3 cut(s)	103, 247, 479
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	2 cut(s)	156, 600
GsaI	CCCAGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	4 cut(s)	117, 147, 675, 709
HapII	CCGG	2 cut(s)	128, 273
HhaI	GCGC	2 cut(s)	157, 601
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	661
Hin6I	GCGC	2 cut(s)	155, 599
HinP1I	GCGC	2 cut(s)	155, 599
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	1 cut(s)	181
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	2 cut(s)	128, 273
HphI	GGTGA	2 cut(s)	230, 653
Hpy166II	GTNNAC	6 cut(s)	28, 286, 740, 805, 852, 858
Hpy188I	TCNGA	5 cut(s)	49, 193, 425, 753, 870
Hpy188III	TCNNGA	4 cut(s)	18, 211, 476, 533
Hpy8I	GTNNAC	6 cut(s)	28, 286, 740, 805, 852, 858
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	320, 632, 894
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	854
HpyCH4V	TGCA	7 cut(s)	7, 28, 229, 379, 572, 794, 826
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 76, 79, 82, 106, 128, 287, 376, 681
HpyF3I	CTNAG	6 cut(s)	132, 159, 254, 366, 663, 720
HpySE526I	ACGT	1 cut(s)	854
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	661
HspAI	GCGC	2 cut(s)	155, 599
KasI	GGCGCC	1 cut(s)	154
KspAI	GTTAAC	1 cut(s)	805
Kzo9I	GATC	6 cut(s)	49, 198, 213, 372, 602, 936
LmnI	GCTCC	4 cut(s)	194, 209, 412, 985
Lsp1109I	GCAGC	9 cut(s)	67, 70, 82, 85, 94, 213, 245, 346, 493
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	854
MaeIII	GTNAC	3 cut(s)	218, 514, 580
MalI	GATC	6 cut(s)	51, 200, 215, 374, 604, 938
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	6 cut(s)	49, 198, 213, 372, 602, 936
MboII	GAAGA	1 cut(s)	922
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	3 cut(s)	49, 198, 372
MhlI	GDGCHC	2 cut(s)	30, 982
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	5 cut(s)	418, 430, 550, 647, 986
MluNI	TGGCCA	1 cut(s)	675
Mly113I	GGCGCC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	8 cut(s)	14, 135, 168, 218, 235, 263, 271, 693
Mox20I	TGGCCA	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	3 cut(s)	804, 891, 1003
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	2 cut(s)	128, 273
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	170, 601
MwoI	GCNNNNNNNGC	9 cut(s)	67, 76, 79, 82, 106, 128, 287, 376, 681
NarI	GGCGCC	1 cut(s)	155
NdeII	GATC	6 cut(s)	49, 198, 213, 372, 602, 936
NlaIII	CATG	1 cut(s)	661
NlaIV	GGNNCC	7 cut(s)	42, 51, 146, 156, 190, 268, 943
NmuCI	GTSAC	2 cut(s)	218, 514
PcsI	WCGNNNNNNNCGW	1 cut(s)	860
PfeI	GAWTC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	734
PluTI	GGCGCC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	7 cut(s)	42, 51, 146, 156, 190, 268, 943
PspPI	GGNCC	6 cut(s)	115, 145, 266, 473, 591, 707
PstI	CTGCAG	1 cut(s)	231
PsuI	RGATCY	3 cut(s)	49, 198, 372
PvuII	CAGCTG	1 cut(s)	258
RsaI	GTAC	3 cut(s)	65, 167, 777
RsaNI	GTAC	3 cut(s)	64, 166, 776
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	804, 891, 1003
Sau3AI	GATC	6 cut(s)	49, 198, 213, 372, 602, 936
Sau96I	GGNCC	6 cut(s)	115, 145, 266, 473, 591, 707
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	30, 982
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	227
SfoI	GGCGCC	1 cut(s)	156
SinI	GGWCC	3 cut(s)	266, 473, 591
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	418, 430, 550, 647, 986
SsiI	CCGC	8 cut(s)	53, 77, 80, 101, 202, 301, 362, 713
SspDI	GGCGCC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	857
TaqI	TCGA	1 cut(s)	342
TaqII	GACCGA	1 cut(s)	709
TasI	AATT	5 cut(s)	418, 430, 550, 647, 986
TatI	WGTACW	1 cut(s)	775
TauI	GCSGC	5 cut(s)	79, 82, 103, 365, 716
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	3 cut(s)	804, 891, 1003
Tru9I	TTAA	3 cut(s)	804, 891, 1003
TscAI	CASTG	4 cut(s)	92, 236, 739, 923
TseFI	GTSAC	2 cut(s)	218, 514
TseI	GCWGC	9 cut(s)	55, 58, 70, 73, 82, 226, 258, 359, 506
Tsp45I	GTSAC	2 cut(s)	218, 514
TspDTI	ATGAA	3 cut(s)	651, 683, 798
TspGWI	ACGGA	3 cut(s)	33, 425, 852
TspRI	CASTG	4 cut(s)	92, 236, 739, 923
Van91I	CCANNNNNTGG	1 cut(s)	734
VneI	GTGCAC	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	266, 473, 591
XapI	RAATTY	2 cut(s)	418, 986
XmaJI	CCTAGG	1 cut(s)	442
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.