MD03G1202200.v1.1

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
27651864 .. 27656008
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1202200.v1.1.491

Sequence Viewer

Length: 1227 bp
ATGATGCAGCAACCATCAGGAGGATTGGTACCACAACAGATTCCGTCCGATCCCCAGCAGCAGTACCAGCAGCAGCCGCCGCAGCAGTGGATGATGATGCCGCCACAGCAGCAGGGGCAAGCCCCTCCGGCGCAGGCTGGGTGGCCCCAGCAGGCGCCTCAGCAGTACGCTACCACACAGAATCCCGGCCCCGATGAGATCCGCTCCCTCTGGATCGGTGACTTGCTGCAGTGGATGGACGAGGCTTATATCCTCAGCTGCTTTGGTCCCACCGGTGAGGCTGTGAATGCAAAGGTTATCCGCAACAAGTTAACGGGTCTGCCAGAAGGTTATGGTTTTATTGAGTTTAGGTCTCGTGCTGCAGCTGAGCAGATCTTGCAGACATACAATGGTGCTCTTATGCCTAACACGGAGCAGAATTTCAGACTGAATTGGGCAACCCTAGGTGCTGGCGAGAGACGGCAGGATGATGGTCCAGATTTTACAGTTTTTGTCGGGGACTTGGCTGCTGATGTGACTGATTACATGCTTCAAGAAACATTTAGACAAAATTACCACTCTGTCAAGGGTGCAAAGGTTGTAACTGATAGGACCACAGGGCGATCTAAGGGATATGGTTTTGTTAGGTTTGCTGATGAAGGTGAGCAATTGCGAGCCATGACTGAGATGAACGGCCAATTTTGTTCTACTAGGCCCATGCGGATTGGGCCTGCGGCTACTAAGAAACCAGCCAGTGGTGGACAGCAATATCAGAAAGCTTCATATCCAAGTACTCAAGGAAATCCAGGCGAAGCTGATCCAAATAATACAACAATATTTGTTGGGGGTCTGGATCCCAGTGTGAATGATGACATGTTGAGGCAAGTTTTTAGCCAGTTTGGTGAGCTTGTTCATGTGAAGATACCAGTAGGCAAGCGTTGTGGTTTTGTTCAATTTGCTAACAGGTCTTGTGCGGAGCAAGCATTGGGATCGTTGAATGGAACACAATTAGGAGGACAAAGTATTCGGCTTTCATGGGGCCGCAGTCCTACAAGCAAACAGAACCAGCCAGATCAAGCACAGTGGAATGGCGCTGGTGGTGCTGGATTTTATGGATATCCACAAGGATACGATGCATATTCATATGCACCTCCTCCTGCCCAAGACCCTGCCCTGTATTATGGAGGCTATGCTGCTGGATATGGAAACTACCAGCAGCCCGGTGCATATCAACAGCAACAGCAGTGA

Protein Analysis

409

Amino Acids

44.79

Weight (kDa)

5.38

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 70 - 138 1.7e-09 RNA recognition motif
RRM_1 PF00076 163 - 232 4e-15 RNA recognition motif
RRM_5 PF13893 254 - 352 1.2e-06 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1 PF00076 272 - 336 2.8e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 2 cut(s) 28, 154
AccB7I CCANNNNNTGG 1 cut(s) 734
AccBSI CCGCTC 1 cut(s) 204
AciI CCGC 9 cut(s) 77, 80, 101, 202, 301, 700, 713, 953, 1021
AclWI GGATC 7 cut(s) 44, 193, 221, 791, 827, 840, 976
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 4 cut(s) 30, 65, 167, 772
AfiI CCNNNNNNNGG 2 cut(s) 20, 734
AflIII ACRYGT 1 cut(s) 852
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 3 cut(s) 533, 932, 976
AjnI CCWGG 1 cut(s) 784
AluBI AGCT 5 cut(s) 258, 365, 758, 794, 886
AluI AGCT 5 cut(s) 258, 365, 758, 794, 886
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 357, 451
AlwI GGATC 7 cut(s) 44, 193, 221, 791, 827, 840, 976
AoxI GGCC 6 cut(s) 143, 187, 673, 692, 707, 1018
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 987, 1019
AsiGI ACCGGT 1 cut(s) 272
Asp718I GGTACC 1 cut(s) 28
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 3 cut(s) 133, 157, 1073
AspS9I GGNCC 8 cut(s) 144, 188, 266, 473, 591, 693, 707, 1018
AsuC2I CCSGG 2 cut(s) 186, 1200
AsuHPI GGTGA 4 cut(s) 230, 287, 653, 893
AvaII GGWCC 3 cut(s) 266, 473, 591
AvrII CCTAGG 1 cut(s) 442
BamHI GGATCC 1 cut(s) 832
BanI GGYRCC 2 cut(s) 28, 154
BauI CACGAG 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 397
BbvCI CCTCAGC 2 cut(s) 159, 254
BccI CCATC 3 cut(s) 22, 229, 464
BceAI ACGGC 2 cut(s) 476, 688
BcgI CGANNNNNNTGC 2 cut(s) 951, 985
BciT130I CCWGG 1 cut(s) 786
BciVI GTATCC 1 cut(s) 1100
BcnI CCSGG 2 cut(s) 186, 1200
BcoDI GTCTC 2 cut(s) 357, 451
BfaI CTAG 2 cut(s) 443, 690
BfmI CTRYAG 2 cut(s) 227, 360
BfoI RGCGCY 2 cut(s) 158, 1074
BfuI GTATCC 1 cut(s) 1100
BglI GCCNNNNNGGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 372
BlnI CCTAGG 1 cut(s) 442
BlpI GCTNAGC 1 cut(s) 366
BmcAI AGTACT 1 cut(s) 772
Bme1390I CCNGG 3 cut(s) 186, 786, 1200
Bme18I GGWCC 3 cut(s) 266, 473, 591
BmgT120I GGNCC 8 cut(s) 144, 188, 266, 473, 591, 693, 707, 1018
BmiI GGNNCC 7 cut(s) 30, 146, 156, 190, 268, 834, 1019
BmrFI CCNGG 3 cut(s) 186, 786, 1200
BmrI ACTGGG 1 cut(s) 831
BmsI GCATC 2 cut(s) 87, 1102
BmuI ACTGGG 1 cut(s) 831
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 2 cut(s) 159, 254
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 759
BpuMI CCSGG 2 cut(s) 186, 1200
BsaHI GRCGYC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 442
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 734
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 4 cut(s) 732, 837, 874, 905
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 3 cut(s) 96, 240, 472
BseLI CCNNNNNNNGG 2 cut(s) 20, 734
BseMII CTCAG 4 cut(s) 173, 268, 357, 654
BseNI ACTGG 4 cut(s) 732, 837, 874, 905
BseRI GAGGAG 1 cut(s) 1122
BseYI CCCAGC 3 cut(s) 54, 137, 147
BshFI GGCC 6 cut(s) 145, 189, 675, 694, 709, 1020
BshNI GGYRCC 2 cut(s) 28, 154
BshTI ACCGGT 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 4 cut(s) 128, 186, 273, 1200
BslFI GGGAC 2 cut(s) 252, 512
BslI CCNNNNNNNGG 2 cut(s) 20, 734
BsmAI GTCTC 2 cut(s) 357, 451
BsmBI CGTCTC 1 cut(s) 451
BsmFI GGGAC 2 cut(s) 252, 512
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 6 cut(s) 145, 189, 675, 694, 709, 1020
Bso31I GGTCTC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 9 cut(s) 49, 198, 213, 372, 602, 796, 832, 968, 1051
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 9 cut(s) 77, 80, 101, 202, 301, 700, 713, 953, 1021
BspANI GGCC 6 cut(s) 145, 189, 675, 694, 709, 1020
BspCNI CTCAG 4 cut(s) 172, 267, 358, 655
BspLI GGNNCC 7 cut(s) 30, 146, 156, 190, 268, 834, 1019
BspMAI CTGCAG 2 cut(s) 231, 364
BspPI GGATC 7 cut(s) 44, 193, 221, 791, 827, 840, 976
BspT107I GGYRCC 2 cut(s) 28, 154
BspTNI GGTCTC 1 cut(s) 357
BsrBI CCGCTC 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 4 cut(s) 732, 837, 874, 905
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 9 cut(s) 49, 198, 213, 372, 602, 796, 832, 968, 1051
BssNI GRCGYC 1 cut(s) 155
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 442
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 2 cut(s) 487, 1062
BstACI GRCGYC 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 376
BstC8I GCNNGC 8 cut(s) 120, 135, 153, 451, 654, 711, 914, 960
BstDEI CTNAG 6 cut(s) 159, 254, 366, 606, 663, 720
BstF5I GGATG 3 cut(s) 96, 240, 472
BstH2I RGCGCY 2 cut(s) 158, 1074
BstHHI GCGC 3 cut(s) 133, 157, 1073
BstKTI GATC 9 cut(s) 52, 201, 216, 375, 605, 799, 835, 971, 1054
BstMAI GTCTC 2 cut(s) 357, 451
BstMBI GATC 9 cut(s) 49, 198, 213, 372, 602, 796, 832, 968, 1051
BstNI CCWGG 1 cut(s) 786
BstNSI RCATGY 2 cut(s) 529, 856
BstSCI CCNGG 3 cut(s) 184, 784, 1198
BstSFI CTRYAG 2 cut(s) 227, 360
BstX2I RGATCY 3 cut(s) 198, 372, 832
BstYI RGATCY 3 cut(s) 198, 372, 832
BsuI GTATCC 1 cut(s) 1100
BsuRI GGCC 6 cut(s) 145, 189, 675, 694, 709, 1020
BtsCI GGATG 3 cut(s) 96, 240, 472
BtsI GCAGTG 2 cut(s) 92, 236
BtsIMutI CAGTG 5 cut(s) 92, 236, 739, 844, 1067
Cac8I GCNNGC 8 cut(s) 120, 135, 153, 451, 654, 711, 914, 960
CfoI GCGC 3 cut(s) 133, 157, 1073
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 8 cut(s) 144, 188, 266, 473, 591, 693, 707, 1018
Csp6I GTAC 4 cut(s) 29, 64, 166, 771
CspAI ACCGGT 1 cut(s) 272
CspCI CAANNNNNGTGG 4 cut(s) 901, 936, 1043, 1078
CviAII CATG 6 cut(s) 526, 658, 697, 853, 893, 1014
CviQI GTAC 4 cut(s) 29, 64, 166, 771
DdeI CTNAG 6 cut(s) 159, 254, 366, 606, 663, 720
DinI GGCGCC 1 cut(s) 156
DpnI GATC 9 cut(s) 51, 200, 215, 374, 604, 798, 834, 970, 1053
DpnII GATC 9 cut(s) 49, 198, 213, 372, 602, 796, 832, 968, 1051
EaeI YGGCCR 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 1097
Eco47I GGWCC 3 cut(s) 266, 473, 591
EcoRII CCWGG 1 cut(s) 784
EcoRV GATATC 1 cut(s) 1097
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 1117
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 6 cut(s) 529, 661, 700, 856, 896, 1017
FaqI GGGAC 2 cut(s) 252, 512
FatI CATG 6 cut(s) 525, 657, 696, 852, 892, 1013
FauNDI CATATG 1 cut(s) 1123
FokI GGATG 3 cut(s) 103, 247, 479
FspBI CTAG 2 cut(s) 443, 690
GlaI GCGC 3 cut(s) 132, 156, 1072
GsaI CCCAGC 3 cut(s) 58, 141, 151
HaeII RGCGCY 2 cut(s) 158, 1074
HaeIII GGCC 6 cut(s) 145, 189, 675, 694, 709, 1020
HapII CCGG 4 cut(s) 128, 186, 273, 1200
HhaI GCGC 3 cut(s) 133, 157, 1073
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 6 cut(s) 529, 661, 700, 856, 896, 1017
Hin6I GCGC 3 cut(s) 131, 155, 1071
HinP1I GCGC 3 cut(s) 131, 155, 1071
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 2 cut(s) 40, 181
HpaI GTTAAC 1 cut(s) 312
HpaII CCGG 4 cut(s) 128, 186, 273, 1200
HphI GGTGA 4 cut(s) 230, 287, 653, 893
Hpy166II GTNNAC 2 cut(s) 312, 740
Hpy188I TCNGA 3 cut(s) 49, 425, 753
Hpy188III TCNNGA 5 cut(s) 18, 211, 476, 533, 830
Hpy8I GTNNAC 2 cut(s) 312, 740
HpyAV CCTTC 2 cut(s) 320, 632
HpyCH4III ACNGT 2 cut(s) 487, 1062
HpyCH4V TGCA 9 cut(s) 7, 229, 290, 362, 379, 572, 1115, 1127, 1205
HpyF3I CTNAG 6 cut(s) 159, 254, 366, 606, 663, 720
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 6 cut(s) 529, 661, 700, 856, 896, 1017
HspAI GCGC 3 cut(s) 131, 155, 1071
KasI GGCGCC 1 cut(s) 154
KpnI GGTACC 1 cut(s) 32
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 9 cut(s) 49, 198, 213, 372, 602, 796, 832, 968, 1051
LmnI GCTCC 3 cut(s) 209, 412, 955
LweI GCATC 2 cut(s) 87, 1102
MaeI CTAG 2 cut(s) 443, 690
MaeIII GTNAC 3 cut(s) 218, 514, 580
MalI GATC 9 cut(s) 51, 200, 215, 374, 604, 798, 834, 970, 1053
MbiI CCGCTC 1 cut(s) 204
MboI GATC 9 cut(s) 49, 198, 213, 372, 602, 796, 832, 968, 1051
MboII GAAGA 1 cut(s) 910
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 3 cut(s) 198, 372, 832
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 7 cut(s) 418, 430, 550, 647, 677, 932, 986
Mly113I GGCGCC 1 cut(s) 155
Mph1103I ATGCAT 1 cut(s) 1117
MseI TTAA 1 cut(s) 311
MspA1I CMGCKG 2 cut(s) 258, 365
MspI CCGG 4 cut(s) 128, 186, 273, 1200
MspR9I CCNGG 3 cut(s) 186, 786, 1200
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 1 cut(s) 786
NarI GGCGCC 1 cut(s) 155
NciI CCSGG 2 cut(s) 186, 1200
NdeI CATATG 1 cut(s) 1123
NdeII GATC 9 cut(s) 49, 198, 213, 372, 602, 796, 832, 968, 1051
NlaIII CATG 6 cut(s) 529, 661, 700, 856, 896, 1017
NlaIV GGNNCC 7 cut(s) 30, 146, 156, 190, 268, 834, 1019
NmuCI GTSAC 2 cut(s) 218, 514
NsiI ATGCAT 1 cut(s) 1117
NspI RCATGY 2 cut(s) 529, 856
PciI ACATGT 1 cut(s) 852
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 40, 181
PflMI CCANNNNNTGG 1 cut(s) 734
PinAI ACCGGT 1 cut(s) 272
PluTI GGCGCC 1 cut(s) 158
PscI ACATGT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 784
PspFI CCCAGC 3 cut(s) 54, 137, 147
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 7 cut(s) 30, 146, 156, 190, 268, 834, 1019
PspPI GGNCC 8 cut(s) 144, 188, 266, 473, 591, 693, 707, 1018
PstI CTGCAG 2 cut(s) 231, 364
PsuI RGATCY 3 cut(s) 198, 372, 832
PvuII CAGCTG 2 cut(s) 258, 365
RsaI GTAC 4 cut(s) 30, 65, 167, 772
RsaNI GTAC 4 cut(s) 29, 64, 166, 771
SaqAI TTAA 1 cut(s) 311
Sau3AI GATC 9 cut(s) 49, 198, 213, 372, 602, 796, 832, 968, 1051
Sau96I GGNCC 8 cut(s) 144, 188, 266, 473, 591, 693, 707, 1018
ScaI AGTACT 1 cut(s) 772
ScrFI CCNGG 3 cut(s) 186, 786, 1200
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 2 cut(s) 87, 1102
SfcI CTRYAG 2 cut(s) 227, 360
SfoI GGCGCC 1 cut(s) 156
SgrAI CRCCGGYG 1 cut(s) 272
SinI GGWCC 3 cut(s) 266, 473, 591
SmlI CTYRAG 1 cut(s) 774
SmoI CTYRAG 1 cut(s) 774
Sse9I AATT 7 cut(s) 418, 430, 550, 647, 677, 932, 986
SsiI CCGC 9 cut(s) 77, 80, 101, 202, 301, 700, 713, 953, 1021
SspDI GGCGCC 1 cut(s) 154
SspI AATATT 1 cut(s) 816
SspMI CTAG 2 cut(s) 443, 690
StyD4I CCNGG 3 cut(s) 184, 784, 1198
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 2 cut(s) 487, 1062
TasI AATT 7 cut(s) 418, 430, 550, 647, 677, 932, 986
TatI WGTACW 1 cut(s) 770
TauI GCSGC 5 cut(s) 79, 82, 103, 716, 1023
TfiI GAWTC 2 cut(s) 40, 181
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 5 cut(s) 92, 236, 739, 844, 1067
TseFI GTSAC 2 cut(s) 218, 514
Tsp45I GTSAC 2 cut(s) 218, 514
TspDTI ATGAA 6 cut(s) 651, 683, 750, 881, 1002, 1110
TspGWI ACGGA 2 cut(s) 33, 425
TspRI CASTG 5 cut(s) 92, 236, 739, 844, 1067
Van91I CCANNNNNTGG 1 cut(s) 734
VpaK11BI GGWCC 3 cut(s) 266, 473, 591
XapI RAATTY 1 cut(s) 418
XceI RCATGY 2 cut(s) 529, 856
XmaJI CCTAGG 1 cut(s) 442
XspI CTAG 2 cut(s) 443, 690
ZrmI AGTACT 1 cut(s) 772
Zsp2I ATGCAT 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.