Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Reverse (-)

32050457 .. 32052326

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1219500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCGTACCAGGCTGATAAGGATTTCTTCTGCAAAAAACTTTATCTCTTCCTACCCAAGTACTCAAGGAAATCCAGGCGAAGCTGATCCAAATAATACAACAATATTTGTTGGGGGTCTGGATCCCAGTGTGAATGATGACATGTTGAGGCAAGTTTTTAGTCAGTTTGGTGAGCTTGTTCATGTGAAGATACCAGTAGGCAAGCGTTGTGGTTTCGTTCAATTTGCGAACAGATCTTGTGCGGAGCAAGCATTGGGATCGTTGAATGGAACACAATTGGGAGGACAAAGTATTCGGCTTTCATGGGGCCGCAGTCCTACAAGCAAACAGAACCAGCCAGATCAGGCACAGTGGAACGGCGCTGGTGGTGCTGGATTTTATGGATATCCACAAGGATATGATGCATATTCGTACGCACCTCCTCCAGCCCAAGATCCTGCCATGTATTATGGAGGCTACGCTGCTGGATACGGAAACTACCAGCAGCCTGGTGCATACCAACAGCAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

172

Amino Acids

18.52

Weight (kDa)

8.53

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_5	PF13893	17 - 115	2.3e-07	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	35 - 99	5.8e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	242, 310
AclWI	GGATC	5 cut(s)	80, 116, 129, 265, 428
AfaI	GTAC	3 cut(s)	7, 61, 413
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	221, 265
AjnI	CCWGG	3 cut(s)	8, 73, 487
AluBI	AGCT	2 cut(s)	83, 175
AluI	AGCT	2 cut(s)	83, 175
AlwI	GGATC	5 cut(s)	80, 116, 129, 265, 428
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	461, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	448, 496
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	3 cut(s)	10, 75, 489
BciVI	GTATCC	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	233
BisI	GCNGC	3 cut(s)	310, 462, 485
BlsI	GCNGC	3 cut(s)	311, 463, 486
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	3 cut(s)	10, 75, 489
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	123, 308
BmrFI	CCNGG	3 cut(s)	10, 75, 489
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	126, 194
BseBI	CCWGG	3 cut(s)	10, 75, 489
BseNI	ACTGG	2 cut(s)	126, 194
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	448, 496
BshFI	GGCC	1 cut(s)	309
BsiWI	CGTACG	1 cut(s)	411
BsnI	GGCC	1 cut(s)	309
Bsp143I	GATC	6 cut(s)	85, 121, 233, 257, 340, 433
BspACI	CCGC	2 cut(s)	242, 310
BspANI	GGCC	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	123, 308
BspPI	GGATC	5 cut(s)	80, 116, 129, 265, 428
BsrI	ACTGG	2 cut(s)	126, 194
BssMI	GATC	6 cut(s)	85, 121, 233, 257, 340, 433
Bst2UI	CCWGG	3 cut(s)	10, 75, 489
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	203, 249
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	6 cut(s)	88, 124, 236, 260, 343, 436
BstMBI	GATC	6 cut(s)	85, 121, 233, 257, 340, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 248, 368
BstNI	CCWGG	3 cut(s)	10, 75, 489
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	3 cut(s)	8, 73, 487
BstV1I	GCAGC	2 cut(s)	448, 496
BstX2I	RGATCY	3 cut(s)	121, 233, 433
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	3 cut(s)	121, 233, 433
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	133, 356
Cac8I	GCNNGC	2 cut(s)	203, 249
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	3 cut(s)	6, 60, 412
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	4 cut(s)	142, 182, 303, 442
CviJI	RGCY	9 cut(s)	13, 83, 175, 298, 309, 337, 428, 456, 487
CviKI_1	RGCY	9 cut(s)	13, 83, 175, 298, 309, 337, 428, 456, 487
CviQI	GTAC	3 cut(s)	6, 60, 412
DpnI	GATC	6 cut(s)	87, 123, 235, 259, 342, 435
DpnII	GATC	6 cut(s)	85, 121, 233, 257, 340, 433
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	386
EcoRII	CCWGG	3 cut(s)	8, 73, 487
EcoRV	GATATC	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	406
FaeI	CATG	4 cut(s)	145, 185, 306, 445
FaiI	YATR	9 cut(s)	143, 183, 304, 381, 399, 406, 443, 450, 496
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FatI	CATG	4 cut(s)	141, 181, 302, 441
Fnu4HI	GCNGC	3 cut(s)	310, 462, 485
Fsp4HI	GCNGC	3 cut(s)	310, 462, 485
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	3 cut(s)	310, 462, 485
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	145, 185, 306, 445
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HphI	GGTGA	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	32, 404, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 248, 368
Hsp92II	CATG	4 cut(s)	145, 185, 306, 445
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	85, 121, 233, 257, 340, 433
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	2 cut(s)	448, 496
LweI	GCATC	1 cut(s)	391
MalI	GATC	6 cut(s)	87, 123, 235, 259, 342, 435
MboI	GATC	6 cut(s)	85, 121, 233, 257, 340, 433
MboII	GAAGA	3 cut(s)	18, 39, 199
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	3 cut(s)	121, 233, 433
MluCI	AATT	2 cut(s)	221, 275
MnlI	CCTC	5 cut(s)	141, 275, 429, 432, 446
Mph1103I	ATGCAT	1 cut(s)	406
MspR9I	CCNGG	3 cut(s)	10, 75, 489
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	3 cut(s)	10, 75, 489
MwoI	GCNNNNNNNGC	3 cut(s)	10, 248, 368
NdeII	GATC	6 cut(s)	85, 121, 233, 257, 340, 433
NlaIII	CATG	4 cut(s)	145, 185, 306, 445
NlaIV	GGNNCC	2 cut(s)	123, 308
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	145
PciI	ACATGT	1 cut(s)	141
Pfl23II	CGTACG	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	311, 463, 486
PscI	ACATGT	1 cut(s)	141
Psp6I	CCWGG	3 cut(s)	8, 73, 487
PspGI	CCWGG	3 cut(s)	8, 73, 487
PspLI	CGTACG	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	123, 308
PspPI	GGNCC	1 cut(s)	307
PsuI	RGATCY	3 cut(s)	121, 233, 433
RsaI	GTAC	3 cut(s)	7, 61, 413
RsaNI	GTAC	3 cut(s)	6, 60, 412
SatI	GCNGC	3 cut(s)	310, 462, 485
Sau3AI	GATC	6 cut(s)	85, 121, 233, 257, 340, 433
Sau96I	GGNCC	1 cut(s)	307
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	10, 75, 489
SetI	ASST	3 cut(s)	85, 177, 421
SfaNI	GCATC	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	221, 275
SsiI	CCGC	2 cut(s)	242, 310
SspI	AATATT	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	8, 73, 487
TaaI	ACNGT	1 cut(s)	351
TasI	AATT	2 cut(s)	221, 275
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	312
TscAI	CASTG	2 cut(s)	133, 356
TseI	GCWGC	2 cut(s)	461, 484
TspDTI	ATGAA	2 cut(s)	170, 291
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	133, 356
XceI	RCATGY	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.