Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Forward (+)

33202280 .. 33206199

Gene Structure 3920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGATGCAACAGCCATCAGGAGGAGTCGTCCCGGCGGATCAGCAGCCGCAGCAGCAGTACCAGCAGCAACCGCCGCAGCAGTGGATGATGATGCCGCCGCAGCAGCAACACCAAGCTGCCGCTGCTCAGGCCGCCCAGGCCGGGTGGGCCCAGCAGCAGGCGGCTATGCAGCAGCAGCAGCAGCCTCAGCAGTACACGGCCGCGGCGGCGAGTCAGGGCTCTGATGAGATCCGATCGCTCTGGATCGGCGACTTGCTCCAGTGGATGGACGAGAACTACATCCTCAACTGCTTCGGTCCCACCGGAGAGGCTGTGAATGCAAAGGTTATCCGTAACAAGCAAACAGGACTGCCAGAAGGGTATGGTTTTATTGAGTTTAGGACTCGCAATGCGGCTGAGCAGGTTTTGCAGAACTACAATGGTACAGTGATGCCCAACACTGAGCAGAATTTCCGCCTCAACTGGGCCACCCTGGGGGCTGGTGAAAGGCGCCAGGATGATGGCCCGGACTATACTGTTTTTGTTGGCGATTTGGCCGCTGATGTTACCGATTACACCCTTCAAGAGACATTTAGGGCTCATTACCACTCTGTGAAGGGTGCAAAAGTTGTCACTGATAGGACCACCGGACGCTCTAAGGGATATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGTTGCGAGCAATGAATGAGATGAATGGTCAGTTTTGCTCTAGCAGACCCATGAGGATTGGGCCTGCTGCTACTAAGAAACCAGTTGGTGGTGGACAACCATTTCAAAAAGCTGCCTACCCAAGTTCTCAAGGAAATCCAGGGGAGGCTGACCCAAATAACACAACAATATTTGTTGGGGGTTTGGATCCCAGTGTTGATGATGAAATGTTGAGACAATCTTTTGGCATGTTTGGTGAGCTAGTTCATGTGAAGATACCAGTTGGCAAGCGCTGTGGTTTTGTTCAATTTGCTAACAGAGCTTGTGCGGAGCAAGCATTGTCGGTGATGAATGGGCGAGTAGTGGGATCACAAAGTGTTAGACTTTCTTGGGGCCGTAGTCCTTCAAGCAAACAGAACCAGCCAGAACAGACACAGTGGAATGGTGCTGGTGGTGCTGGATTTTATCAATATCCCCAAGGATATGATGCGTATACATATGCACCTCCTACCCAAGACCCTAACCTGTACTATGGAGGGTATGCTGGATATGGAAATTACCAGCAGCCTGGTGCAGCTTACCAACAGCAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

417

Amino Acids

45.96

Weight (kDa)

5.68

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	80 - 148	9.6e-11	RNA recognition motif
RRM_1	PF00076	173 - 243	8e-15	RNA recognition motif
RRM_1	PF00076	282 - 345	1.9e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	489
AccB7I	CCANNNNNTGG	2 cut(s)	265, 764
AccI	GTMKAC	1 cut(s)	1148
AccII	CGCG	1 cut(s)	203
AclWI	GGATC	6 cut(s)	45, 223, 251, 857, 870, 1030
AcoI	YGGCCR	2 cut(s)	198, 534
AcsI	RAATTY	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	490
AdeI	CACNNNGTG	2 cut(s)	592, 1031
AfaI	GTAC	4 cut(s)	59, 194, 424, 1184
AfeI	AGCGCT	1 cut(s)	947
AfiI	CCNNNNNNNGG	7 cut(s)	20, 141, 157, 265, 463, 474, 764
AgsI	TTSAA	4 cut(s)	563, 782, 962, 1062
AjnI	CCWGG	5 cut(s)	135, 471, 492, 814, 1222
AluBI	AGCT	5 cut(s)	116, 788, 916, 977, 1232
AluI	AGCT	5 cut(s)	116, 788, 916, 977, 1232
Alw26I	GTCTC	2 cut(s)	560, 883
AlwI	GGATC	6 cut(s)	45, 223, 251, 857, 870, 1030
Aor51HI	AGCGCT	1 cut(s)	947
AoxI	GGCC	9 cut(s)	129, 138, 147, 198, 465, 502, 534, 737, 1048
ApaI	GGGCCC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	492, 948
AspS9I	GGNCC	8 cut(s)	147, 148, 296, 465, 503, 621, 737, 1048
AsuC2I	CCSGG	3 cut(s)	32, 142, 506
AsuHPI	GGTGA	3 cut(s)	494, 923, 1012
AvaII	GGWCC	2 cut(s)	296, 621
BaeGI	GKGCMC	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	489
BanII	GRGCYC	3 cut(s)	151, 221, 580
BbvCI	CCTCAGC	1 cut(s)	186
BccI	CCATC	3 cut(s)	22, 259, 494
BceAI	ACGGC	2 cut(s)	213, 1035
BciT130I	CCWGG	5 cut(s)	137, 473, 494, 816, 1224
BcnI	CCSGG	3 cut(s)	32, 142, 506
BcoDI	GTCTC	2 cut(s)	560, 883
BfaI	CTAG	2 cut(s)	717, 917
BfoI	RGCGCY	2 cut(s)	493, 949
BfuAI	ACCTGC	1 cut(s)	391
BglI	GCCNNNNNGGC	3 cut(s)	137, 146, 206
BlpI	GCTNAGC	1 cut(s)	396
Bme1390I	CCNGG	8 cut(s)	32, 137, 142, 473, 494, 506, 816, 1224
Bme18I	GGWCC	2 cut(s)	296, 621
BmgT120I	GGNCC	8 cut(s)	147, 148, 296, 465, 503, 621, 737, 1048
BmiI	GGNNCC	5 cut(s)	149, 298, 491, 864, 1049
BmrFI	CCNGG	8 cut(s)	32, 137, 142, 473, 494, 506, 816, 1224
BmrI	ACTGGG	2 cut(s)	472, 861
BmsI	GCATC	3 cut(s)	81, 420, 1132
BmuI	ACTGGG	2 cut(s)	472, 861
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	126, 186
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	789
BpuMI	CCSGG	3 cut(s)	32, 142, 506
BsaHI	GRCGYC	1 cut(s)	490
BsaJI	CCNNGG	6 cut(s)	135, 201, 471, 472, 815, 1132
BsaWI	WCCGGW	2 cut(s)	302, 626
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 297, 327
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 141, 157, 265, 463, 474, 764
Bse1I	ACTGG	5 cut(s)	259, 467, 758, 867, 935
Bse3DI	GCAATG	2 cut(s)	394, 693
BseBI	CCWGG	5 cut(s)	137, 473, 494, 816, 1224
BseDI	CCNNGG	6 cut(s)	135, 201, 471, 472, 815, 1132
BseGI	GGATG	4 cut(s)	90, 270, 279, 502
BseLI	CCNNNNNNNGG	7 cut(s)	20, 141, 157, 265, 463, 474, 764
BseMI	GCAATG	2 cut(s)	394, 693
BseMII	CTCAG	4 cut(s)	140, 200, 387, 432
BseNI	ACTGG	5 cut(s)	259, 467, 758, 867, 935
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	151
BseX3I	CGGCCG	1 cut(s)	198
BseYI	CCCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	1248
Bsh1236I	CGCG	1 cut(s)	203
Bsh1285I	CGRYCG	2 cut(s)	201, 236
BshFI	GGCC	9 cut(s)	131, 140, 149, 200, 467, 504, 536, 739, 1050
BshNI	GGYRCC	1 cut(s)	489
BsiEI	CGRYCG	2 cut(s)	201, 236
BsiSI	CCGG	5 cut(s)	32, 141, 303, 506, 627
BslFI	GGGAC	2 cut(s)	14, 282
BslI	CCNNNNNNNGG	7 cut(s)	20, 141, 157, 265, 463, 474, 764
BsmAI	GTCTC	2 cut(s)	560, 883
BsmFI	GGGAC	2 cut(s)	14, 282
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	9 cut(s)	131, 140, 149, 200, 467, 504, 536, 739, 1050
Bsp120I	GGGCCC	1 cut(s)	147
Bsp1286I	GDGCHC	3 cut(s)	151, 221, 580
Bsp143I	GATC	6 cut(s)	37, 228, 233, 243, 862, 1022
Bsp1720I	GCTNAGC	1 cut(s)	396
BspANI	GGCC	9 cut(s)	131, 140, 149, 200, 467, 504, 536, 739, 1050
BspCNI	CTCAG	4 cut(s)	139, 199, 388, 433
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	5 cut(s)	149, 298, 491, 864, 1049
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	6 cut(s)	45, 223, 251, 857, 870, 1030
BspT107I	GGYRCC	1 cut(s)	489
BsrDI	GCAATG	2 cut(s)	394, 693
BsrI	ACTGG	5 cut(s)	259, 467, 758, 867, 935
BssECI	CCNNGG	6 cut(s)	135, 201, 471, 472, 815, 1132
BssMI	GATC	6 cut(s)	37, 228, 233, 243, 862, 1022
BssNAI	GTATAC	1 cut(s)	1149
BssNI	GRCGYC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	1132
Bst1107I	GTATAC	1 cut(s)	1149
Bst2UI	CCWGG	5 cut(s)	137, 473, 494, 816, 1224
Bst4CI	ACNGT	4 cut(s)	427, 517, 678, 1092
BstACI	GRCGYC	1 cut(s)	490
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	5 cut(s)	159, 684, 741, 944, 990
BstDEI	CTNAG	6 cut(s)	126, 186, 396, 441, 636, 750
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	4 cut(s)	90, 270, 279, 502
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	2 cut(s)	493, 949
BstHHI	GCGC	2 cut(s)	492, 948
BstKTI	GATC	6 cut(s)	40, 231, 236, 246, 865, 1025
BstMAI	GTCTC	2 cut(s)	560, 883
BstMBI	GATC	6 cut(s)	37, 228, 233, 243, 862, 1022
BstMCI	CGRYCG	2 cut(s)	201, 236
BstNI	CCWGG	5 cut(s)	137, 473, 494, 816, 1224
BstNSI	RCATGY	1 cut(s)	907
BstSCI	CCNGG	8 cut(s)	30, 135, 140, 471, 492, 504, 814, 1222
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	228, 862
BstXI	CCANNNNNNTGG	2 cut(s)	500, 1223
BstYI	RGATCY	2 cut(s)	228, 862
BstZ17I	GTATAC	1 cut(s)	1149
BstZI	CGGCCG	1 cut(s)	198
BsuRI	GGCC	9 cut(s)	131, 140, 149, 200, 467, 504, 536, 739, 1050
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	90, 270, 279, 502
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	7 cut(s)	86, 266, 432, 438, 612, 874, 1097
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	5 cut(s)	159, 684, 741, 944, 990
CfoI	GCGC	2 cut(s)	492, 948
Cfr13I	GGNCC	8 cut(s)	147, 148, 296, 465, 503, 621, 737, 1048
Cfr42I	CCGCGG	1 cut(s)	204
CseI	GACGC	1 cut(s)	639
Csp6I	GTAC	4 cut(s)	58, 193, 423, 1183
CspCI	CAANNNNNGTGG	2 cut(s)	931, 966
CviAII	CATG	3 cut(s)	727, 904, 923
CviQI	GTAC	4 cut(s)	58, 193, 423, 1183
DdeI	CTNAG	6 cut(s)	126, 186, 396, 441, 636, 750
DinI	GGCGCC	1 cut(s)	491
DpnI	GATC	6 cut(s)	39, 230, 235, 245, 864, 1024
DpnII	GATC	6 cut(s)	37, 228, 233, 243, 862, 1022
DraIII	CACNNNGTG	2 cut(s)	592, 1031
EaeI	YGGCCR	2 cut(s)	198, 534
EagI	CGGCCG	1 cut(s)	198
EciI	GGCGGA	2 cut(s)	50, 443
EclXI	CGGCCG	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	1132
Eco24I	GRGCYC	3 cut(s)	151, 221, 580
Eco47I	GGWCC	2 cut(s)	296, 621
Eco47III	AGCGCT	1 cut(s)	947
Eco52I	CGGCCG	1 cut(s)	198
EcoRII	CCWGG	5 cut(s)	135, 471, 492, 814, 1222
EcoT14I	CCWWGG	1 cut(s)	1132
EcoT38I	GRGCYC	3 cut(s)	151, 221, 580
EgeI	GGCGCC	1 cut(s)	491
EheI	GGCGCC	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	1132
FaeI	CATG	3 cut(s)	730, 907, 926
FaqI	GGGAC	2 cut(s)	14, 282
FatI	CATG	3 cut(s)	726, 903, 922
FauNDI	CATATG	1 cut(s)	1153
FblI	GTMKAC	1 cut(s)	1148
FokI	GGATG	4 cut(s)	97, 266, 277, 509
FriOI	GRGCYC	3 cut(s)	151, 221, 580
FspBI	CTAG	2 cut(s)	717, 917
GlaI	GCGC	2 cut(s)	491, 947
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	2 cut(s)	493, 949
HaeIII	GGCC	9 cut(s)	131, 140, 149, 200, 467, 504, 536, 739, 1050
HapII	CCGG	5 cut(s)	32, 141, 303, 506, 627
HgaI	GACGC	1 cut(s)	639
HhaI	GCGC	2 cut(s)	492, 948
Hin1I	GRCGYC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	730, 907, 926
Hin6I	GCGC	2 cut(s)	490, 946
HinP1I	GCGC	2 cut(s)	490, 946
HinfI	GANTC	3 cut(s)	24, 211, 382
HpaII	CCGG	5 cut(s)	32, 141, 303, 506, 627
HphI	GGTGA	3 cut(s)	494, 923, 1012
Hpy166II	GTNNAC	4 cut(s)	195, 674, 770, 1149
Hpy188I	TCNGA	2 cut(s)	223, 233
Hpy188III	TCNNGA	3 cut(s)	18, 241, 563
Hpy8I	GTNNAC	4 cut(s)	195, 674, 770, 1149
HpyAV	CCTTC	4 cut(s)	350, 569, 589, 1068
HpyCH4III	ACNGT	4 cut(s)	427, 517, 678, 1092
HpyCH4V	TGCA	7 cut(s)	7, 169, 320, 409, 602, 1157, 1229
HpyF3I	CTNAG	6 cut(s)	126, 186, 396, 441, 636, 750
Hsp92I	GRCGYC	1 cut(s)	490
Hsp92II	CATG	3 cut(s)	730, 907, 926
HspAI	GCGC	2 cut(s)	490, 946
KasI	GGCGCC	1 cut(s)	489
KspI	CCGCGG	1 cut(s)	204
Kzo9I	GATC	6 cut(s)	37, 228, 233, 243, 862, 1022
LmnI	GCTCC	2 cut(s)	261, 985
LweI	GCATC	3 cut(s)	81, 420, 1132
MaeI	CTAG	2 cut(s)	717, 917
MaeIII	GTNAC	3 cut(s)	332, 544, 610
MalI	GATC	6 cut(s)	39, 230, 235, 245, 864, 1024
MboI	GATC	6 cut(s)	37, 228, 233, 243, 862, 1022
MboII	GAAGA	1 cut(s)	940
MflI	RGATCY	2 cut(s)	228, 862
MhlI	GDGCHC	3 cut(s)	151, 221, 580
MluCI	AATT	3 cut(s)	448, 962, 1210
Mly113I	GGCGCC	1 cut(s)	490
MlyI	GAGTC	3 cut(s)	33, 220, 376
MnlI	CCTC	9 cut(s)	14, 195, 293, 301, 467, 723, 814, 1170, 1184
MspA1I	CMGCKG	3 cut(s)	122, 203, 539
MspI	CCGG	5 cut(s)	32, 141, 303, 506, 627
MspR9I	CCNGG	8 cut(s)	32, 137, 142, 473, 494, 506, 816, 1224
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	5 cut(s)	137, 473, 494, 816, 1224
MvnI	CGCG	1 cut(s)	203
NarI	GGCGCC	1 cut(s)	490
NciI	CCSGG	3 cut(s)	32, 142, 506
NdeI	CATATG	1 cut(s)	1153
NdeII	GATC	6 cut(s)	37, 228, 233, 243, 862, 1022
NlaIII	CATG	3 cut(s)	730, 907, 926
NlaIV	GGNNCC	5 cut(s)	149, 298, 491, 864, 1049
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	907
PasI	CCCWGGG	1 cut(s)	472
PctI	GAATGC	1 cut(s)	322
PflMI	CCANNNNNTGG	2 cut(s)	265, 764
Ple19I	CGATCG	1 cut(s)	236
PleI	GAGTC	3 cut(s)	32, 219, 376
PluTI	GGCGCC	1 cut(s)	493
PpsI	GAGTC	3 cut(s)	32, 219, 376
Psp6I	CCWGG	5 cut(s)	135, 471, 492, 814, 1222
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	5 cut(s)	135, 471, 492, 814, 1222
PspN4I	GGNNCC	5 cut(s)	149, 298, 491, 864, 1049
PspOMI	GGGCCC	1 cut(s)	147
PspPI	GGNCC	8 cut(s)	147, 148, 296, 465, 503, 621, 737, 1048
PsuI	RGATCY	2 cut(s)	228, 862
PvuI	CGATCG	1 cut(s)	236
RsaI	GTAC	4 cut(s)	59, 194, 424, 1184
RsaNI	GTAC	4 cut(s)	58, 193, 423, 1183
SacII	CCGCGG	1 cut(s)	204
Sau3AI	GATC	6 cut(s)	37, 228, 233, 243, 862, 1022
Sau96I	GGNCC	8 cut(s)	147, 148, 296, 465, 503, 621, 737, 1048
SchI	GAGTC	3 cut(s)	33, 220, 376
ScrFI	CCNGG	8 cut(s)	32, 137, 142, 473, 494, 506, 816, 1224
SduI	GDGCHC	3 cut(s)	151, 221, 580
SfaNI	GCATC	3 cut(s)	81, 420, 1132
SfiI	GGCCNNNNNGGCC	2 cut(s)	137, 146
SfoI	GGCGCC	1 cut(s)	491
Sfr303I	CCGCGG	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	204
SinI	GGWCC	2 cut(s)	296, 621
SmlI	CTYRAG	1 cut(s)	804
SmoI	CTYRAG	1 cut(s)	804
Sse9I	AATT	3 cut(s)	448, 962, 1210
SspDI	GGCGCC	1 cut(s)	489
SspI	AATATT	1 cut(s)	846
SspMI	CTAG	2 cut(s)	717, 917
StyD4I	CCNGG	8 cut(s)	30, 135, 140, 471, 492, 504, 814, 1222
StyI	CCWWGG	1 cut(s)	1132
TaaI	ACNGT	4 cut(s)	427, 517, 678, 1092
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	3 cut(s)	448, 962, 1210
TatI	WGTACW	2 cut(s)	192, 1182
TscAI	CASTG	7 cut(s)	86, 266, 432, 445, 619, 874, 1097
TseFI	GTSAC	1 cut(s)	610
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	5 cut(s)	704, 713, 894, 911, 1019
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	7 cut(s)	86, 266, 432, 445, 619, 874, 1097
Van91I	CCANNNNNTGG	2 cut(s)	265, 764
VpaK11BI	GGWCC	2 cut(s)	296, 621
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	907
XmiI	GTMKAC	1 cut(s)	1148
XspI	CTAG	2 cut(s)	717, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.