Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Forward (+)

13203836 .. 13209176

Gene Structure 5341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCAGCAGCCATCAGGAGGAGTGGTCCCACAACAGATTCCGTCAGATCCGCAGCAGCAATACCAGCAGCAGCCGCCGCAGCAGTGGATGATGATGCCGCCGCCGCAGCAGGGCCAAGCCCCTCCGGCACAGGCTGGGTGGGCCCATCCGGCACCTCAGCAGCAGTACGCGACCACACAGAATCCTGGCCCCGATGAGATCCGCTCGCTCTGGATCGGTGACTTGTTGCCGTGGATGGACGAGAACTACATCCTCAGCTGTTTTGGTCCCACCGGAGAGGCTGTGACTGCAAAGGTTATCCGTAATAAGCAGACGGCTTTGCCAGAAGGTTATGGCTTTATCGAGTTTAGGTCTCGCAGTGCGGCTGAGCAGATCTTGCAGCAATACAATGGAACACTGATGCCCAACACAGAGCAGAATTTCCGACTGAATTGGGCAACCCTAGGTGCTGGCGAGAGGCGACAGGACGATGGTCCAGATTTTACAGTTTTTGTAGGGGATTTGGCTGCTGATGTGACTGATTACCTCCTTCAAGAGACATTTAGAGCCGCTTATCACTCTGTTAAGGGTGCAAAAGTTGTCACTGATAGGACCACTGGACGCTCCAAGGGATATGGTTTTGTTAGGTTTGGTGATGAAGGTGAGCAATTGCGAGCCATGACTGAGATGAATGGTCAGTATTGCTCTACCAGGCCCATGCGGATTGGCCCTGCTGCTACTAAGAAACCAGCTAGTGGTGGACAGCAATACCAGAAAGCTTCCTACCCAAGTACTCAAGGAAATCCAGGCGAGGCTGATCCAAATAATACAACAATATTTGTTGGGGGTTTGGATCCCTCTGTCAATGATGACATGTTGAGACAAGTCTTCGGCCAGTTTGGTGAGCTAGTTCATGTGAAGATACCAGTAGGCAAGCGTTGTGGTTTTGTTCAATTTGGTAATAGATCTTGTGCAGAGCAAGCATTGGGAACGTTGAATGGAACCCAATTAGGAGGACAAAGTATTAGACTTTCATGGGGCCGCAGTCCTACAAGCAAACAGAACCAACCAGATCAGGCACAGTGGAATGGCGGTGGTGGTGGATTTTATGGATATCCACAAGGATATGATGCGTATACATATGCACCTCCTGCCCAAGACCCTAACCTGTATTATGGAGGCTATCATGGATATGGAAATTACCAGCAGCCTGGTGCTTACCAACAGCAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

406

Amino Acids

44.52

Weight (kDa)

5.66

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	734
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	1115
AccII	CGCG	1 cut(s)	170
AclI	AACGTT	1 cut(s)	971
AclWI	GGATC	6 cut(s)	41, 193, 221, 791, 827, 840
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	1 cut(s)	418
AfaI	GTAC	2 cut(s)	167, 772
AfiI	CCNNNNNNNGG	3 cut(s)	17, 110, 734
AflIII	ACRYGT	1 cut(s)	852
AgsI	TTSAA	3 cut(s)	533, 932, 976
AjnI	CCWGG	4 cut(s)	184, 689, 784, 1189
AluBI	AGCT	4 cut(s)	258, 731, 758, 886
AluI	AGCT	4 cut(s)	258, 731, 758, 886
Alw26I	GTCTC	3 cut(s)	357, 530, 853
AlwI	GGATC	6 cut(s)	41, 193, 221, 791, 827, 840
AoxI	GGCC	7 cut(s)	112, 141, 187, 692, 706, 871, 1018
ApaI	GGGCCC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	418
AspA2I	CCTAGG	1 cut(s)	442
AsuHPI	GGTGA	4 cut(s)	230, 644, 653, 893
AvaII	GGWCC	4 cut(s)	25, 266, 473, 591
AvrII	CCTAGG	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	832
BanI	GGYRCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	859
BbvCI	CCTCAGC	2 cut(s)	156, 254
BccI	CCATC	4 cut(s)	19, 153, 229, 464
BceAI	ACGGC	2 cut(s)	214, 330
BciT130I	CCWGG	4 cut(s)	186, 691, 786, 1191
BcoDI	GTCTC	3 cut(s)	357, 530, 853
BfaI	CTAG	3 cut(s)	443, 732, 887
BglI	GCCNNNNNGGC	2 cut(s)	125, 149
BglII	AGATCT	2 cut(s)	372, 944
BlnI	CCTAGG	1 cut(s)	442
BlpI	GCTNAGC	1 cut(s)	366
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	4 cut(s)	186, 691, 786, 1191
Bme18I	GGWCC	4 cut(s)	25, 266, 473, 591
BmiI	GGNNCC	8 cut(s)	27, 143, 153, 190, 268, 834, 982, 1019
BmrFI	CCNGG	4 cut(s)	186, 691, 786, 1191
BmsI	GCATC	3 cut(s)	84, 390, 1099
BoxI	GACNNNNGTC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	859
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu10I	CCTNAGC	2 cut(s)	156, 254
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	230, 442, 606
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 110, 734
Bse1I	ACTGG	3 cut(s)	601, 874, 905
BseBI	CCWGG	4 cut(s)	186, 691, 786, 1191
BseDI	CCNNGG	3 cut(s)	230, 442, 606
BseGI	GGATG	4 cut(s)	93, 145, 240, 249
BseLI	CCNNNNNNNGG	3 cut(s)	17, 110, 734
BseMII	CTCAG	4 cut(s)	170, 268, 357, 654
BseNI	ACTGG	3 cut(s)	601, 874, 905
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	7 cut(s)	114, 143, 189, 694, 708, 873, 1020
BshNI	GGYRCC	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	125, 149, 273
BslFI	GGGAC	2 cut(s)	11, 252
BslI	CCNNNNNNNGG	3 cut(s)	17, 110, 734
BsmAI	GTCTC	3 cut(s)	357, 530, 853
BsmFI	GGGAC	2 cut(s)	11, 252
BsnI	GGCC	7 cut(s)	114, 143, 189, 694, 708, 873, 1020
Bso31I	GGTCTC	1 cut(s)	357
Bsp120I	GGGCCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	8 cut(s)	46, 198, 213, 372, 796, 832, 944, 1051
Bsp1720I	GCTNAGC	1 cut(s)	366
BspANI	GGCC	7 cut(s)	114, 143, 189, 694, 708, 873, 1020
BspCNI	CTCAG	4 cut(s)	169, 267, 358, 655
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	8 cut(s)	27, 143, 153, 190, 268, 834, 982, 1019
BspPI	GGATC	6 cut(s)	41, 193, 221, 791, 827, 840
BspT107I	GGYRCC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	601, 874, 905
BssECI	CCNNGG	3 cut(s)	230, 442, 606
BssMI	GATC	8 cut(s)	46, 198, 213, 372, 796, 832, 944, 1051
BssNAI	GTATAC	1 cut(s)	1116
BssT1I	CCWWGG	2 cut(s)	442, 606
Bst1107I	GTATAC	1 cut(s)	1116
Bst2UI	CCWGG	4 cut(s)	186, 691, 786, 1191
Bst4CI	ACNGT	2 cut(s)	487, 1062
BstAPI	GCANNNNNTGC	2 cut(s)	376, 1130
BstC8I	GCNNGC	5 cut(s)	206, 451, 654, 914, 960
BstDEI	CTNAG	5 cut(s)	156, 254, 366, 663, 720
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	4 cut(s)	93, 145, 240, 249
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	8 cut(s)	49, 201, 216, 375, 799, 835, 947, 1054
BstMAI	GTCTC	3 cut(s)	357, 530, 853
BstMBI	GATC	8 cut(s)	46, 198, 213, 372, 796, 832, 944, 1051
BstNI	CCWGG	4 cut(s)	186, 691, 786, 1191
BstNSI	RCATGY	1 cut(s)	856
BstPAI	GACNNNNGTC	1 cut(s)	471
BstSCI	CCNGG	4 cut(s)	184, 689, 784, 1189
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	859
BstX2I	RGATCY	5 cut(s)	46, 198, 372, 832, 944
BstXI	CCANNNNNNTGG	1 cut(s)	1190
BstYI	RGATCY	5 cut(s)	46, 198, 372, 832, 944
BstZ17I	GTATAC	1 cut(s)	1116
BsuRI	GGCC	7 cut(s)	114, 143, 189, 694, 708, 873, 1020
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	4 cut(s)	93, 145, 240, 249
BtsI	GCAGTG	2 cut(s)	89, 364
BtsIMutI	CAGTG	6 cut(s)	89, 364, 395, 582, 594, 1067
Cac8I	GCNNGC	5 cut(s)	206, 451, 654, 914, 960
CseI	GACGC	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	166, 771
CspCI	CAANNNNNGTGG	2 cut(s)	901, 936
CviAII	CATG	6 cut(s)	658, 697, 853, 893, 1014, 1166
CviQI	GTAC	2 cut(s)	166, 771
DdeI	CTNAG	5 cut(s)	156, 254, 366, 663, 720
DpnI	GATC	8 cut(s)	48, 200, 215, 374, 798, 834, 946, 1053
DpnII	GATC	8 cut(s)	46, 198, 213, 372, 796, 832, 944, 1051
EaeI	YGGCCR	1 cut(s)	871
Eco130I	CCWWGG	2 cut(s)	442, 606
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	1094
Eco47I	GGWCC	4 cut(s)	25, 266, 473, 591
EcoRII	CCWGG	4 cut(s)	184, 689, 784, 1189
EcoRV	GATATC	1 cut(s)	1094
EcoT14I	CCWWGG	2 cut(s)	442, 606
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	442, 606
FaeI	CATG	6 cut(s)	661, 700, 856, 896, 1017, 1169
FaqI	GGGAC	2 cut(s)	11, 252
FatI	CATG	6 cut(s)	657, 696, 852, 892, 1013, 1165
FauNDI	CATATG	1 cut(s)	1120
FblI	GTMKAC	1 cut(s)	1115
FokI	GGATG	4 cut(s)	100, 132, 236, 247
FriOI	GRGCYC	1 cut(s)	145
FspBI	CTAG	3 cut(s)	443, 732, 887
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	7 cut(s)	114, 143, 189, 694, 708, 873, 1020
HapII	CCGG	3 cut(s)	125, 149, 273
HgaI	GACGC	1 cut(s)	609
Hin1II	CATG	6 cut(s)	661, 700, 856, 896, 1017, 1169
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	2 cut(s)	37, 181
HpaII	CCGG	3 cut(s)	125, 149, 273
HphI	GGTGA	4 cut(s)	230, 644, 653, 893
Hpy166II	GTNNAC	2 cut(s)	740, 1116
Hpy188I	TCNGA	2 cut(s)	46, 425
Hpy188III	TCNNGA	4 cut(s)	15, 211, 476, 533
Hpy8I	GTNNAC	2 cut(s)	740, 1116
HpyAV	CCTTC	3 cut(s)	320, 539, 632
HpyCH4III	ACNGT	2 cut(s)	487, 1062
HpyCH4IV	ACGT	1 cut(s)	971
HpyCH4V	TGCA	6 cut(s)	4, 290, 379, 572, 953, 1124
HpyF3I	CTNAG	5 cut(s)	156, 254, 366, 663, 720
HpySE526I	ACGT	1 cut(s)	971
Hsp92II	CATG	6 cut(s)	661, 700, 856, 896, 1017, 1169
Kzo9I	GATC	8 cut(s)	46, 198, 213, 372, 796, 832, 944, 1051
LmnI	GCTCC	1 cut(s)	608
LweI	GCATC	3 cut(s)	84, 390, 1099
MaeI	CTAG	3 cut(s)	443, 732, 887
MaeII	ACGT	1 cut(s)	971
MaeIII	GTNAC	4 cut(s)	218, 283, 514, 580
MalI	GATC	8 cut(s)	48, 200, 215, 374, 798, 834, 946, 1053
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	8 cut(s)	46, 198, 213, 372, 796, 832, 944, 1051
MboII	GAAGA	2 cut(s)	859, 910
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	5 cut(s)	46, 198, 372, 832, 944
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	6 cut(s)	418, 430, 647, 932, 986, 1177
MmeI	TCCRAC	1 cut(s)	448
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	1170
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	125, 149, 273
MspR9I	CCNGG	4 cut(s)	186, 691, 786, 1191
MunI	CAATTG	1 cut(s)	647
MvaI	CCWGG	4 cut(s)	186, 691, 786, 1191
MvnI	CGCG	1 cut(s)	170
NdeI	CATATG	1 cut(s)	1120
NdeII	GATC	8 cut(s)	46, 198, 213, 372, 796, 832, 944, 1051
NlaIII	CATG	6 cut(s)	661, 700, 856, 896, 1017, 1169
NlaIV	GGNNCC	8 cut(s)	27, 143, 153, 190, 268, 834, 982, 1019
NmuCI	GTSAC	4 cut(s)	218, 283, 514, 580
NspI	RCATGY	1 cut(s)	856
PciI	ACATGT	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	37, 181
PflMI	CCANNNNNTGG	1 cut(s)	734
PscI	ACATGT	1 cut(s)	852
PshAI	GACNNNNGTC	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	971
Psp6I	CCWGG	4 cut(s)	184, 689, 784, 1189
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	4 cut(s)	184, 689, 784, 1189
PspN4I	GGNNCC	8 cut(s)	27, 143, 153, 190, 268, 834, 982, 1019
PspOMI	GGGCCC	1 cut(s)	141
PsuI	RGATCY	5 cut(s)	46, 198, 372, 832, 944
PvuII	CAGCTG	1 cut(s)	258
RsaI	GTAC	2 cut(s)	167, 772
RsaNI	GTAC	2 cut(s)	166, 771
RseI	CAYNNNNRTG	1 cut(s)	1170
SaqAI	TTAA	1 cut(s)	564
Sau3AI	GATC	8 cut(s)	46, 198, 213, 372, 796, 832, 944, 1051
ScaI	AGTACT	1 cut(s)	772
ScrFI	CCNGG	4 cut(s)	186, 691, 786, 1191
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	3 cut(s)	84, 390, 1099
SinI	GGWCC	4 cut(s)	25, 266, 473, 591
SmiMI	CAYNNNNRTG	1 cut(s)	1170
SmlI	CTYRAG	1 cut(s)	774
SmoI	CTYRAG	1 cut(s)	774
Sse9I	AATT	6 cut(s)	418, 430, 647, 932, 986, 1177
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	3 cut(s)	443, 732, 887
StyD4I	CCNGG	4 cut(s)	184, 689, 784, 1189
StyI	CCWWGG	2 cut(s)	442, 606
TaaI	ACNGT	2 cut(s)	487, 1062
TaiI	ACGT	1 cut(s)	974
TaqI	TCGA	1 cut(s)	342
TasI	AATT	6 cut(s)	418, 430, 647, 932, 986, 1177
TatI	WGTACW	1 cut(s)	770
TauI	GCSGC	8 cut(s)	76, 79, 100, 103, 106, 365, 551, 1023
TfiI	GAWTC	2 cut(s)	37, 181
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	6 cut(s)	89, 364, 402, 589, 601, 1067
TseFI	GTSAC	4 cut(s)	218, 283, 514, 580
Tsp45I	GTSAC	4 cut(s)	218, 283, 514, 580
TspDTI	ATGAA	4 cut(s)	651, 683, 881, 1002
TspGWI	ACGGA	2 cut(s)	30, 290
TspRI	CASTG	6 cut(s)	89, 364, 402, 589, 601, 1067
Van91I	CCANNNNNTGG	1 cut(s)	734
VpaK11BI	GGWCC	4 cut(s)	25, 266, 473, 591
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	856
XmaJI	CCTAGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	1115
XspI	CTAG	3 cut(s)	443, 732, 887
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.