Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Reverse (-)

21690049 .. 21693834

Gene Structure 3786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGATGCAACAACCATCAGGAGGAGTGCACCCACAACAGGTTCCGTCGGATCCGCAGCAGCAGTACCAGCAACAGCCACCGCAGCAGTGGATGATGATGCCGCCACAGCAACAGGGCCAAGCCCCTTCGGCTCAGGCTGGGTGGGGCCAGCAGGCGCCTCAGCAGTACGCGACCACACAGAATCCTGGCTCCGATGAGATCCGATCCCTCTGGATCGGTGACTTGCTGCAGTGGATGGACGAGGCTTATATCCTCAGCTGCTTTGGTCCCACCGGAGAGGCTGTGAACGCAAAGGTTATCCGCAACAAGCTTACGGGTCTGCCAGAAGGTTATGGTTTTATCGAGTTTAGGTCTCGCGCTGCGGCTGAGCAGTTCTTGCAGACATACAATGGCACTCTTATGCCTAACACGGAGCAGAATTTCAGACTGAATTGGGCAACCCTAGGTGCTGGCGAGAGACGACAGGATGATGGTCCAGATTTTACCGTCTTTGTTGGGGATTTGGCTGCTGATGTGACTGATTATATGCTTCAAGAAACATTTAGACAAAATTACCACTCTGTCAAGGGTGCAAAGGTTGTAACTGATAGGACCACAGGGCGATCCAAGGGATATGGTTTTGTTAGGTTTGCTGACGAGGGTGAGCAATTGCGAGCCATGACTGAGATGAATGGCCAGTTTTGCTCTACCAGACCAATGAGGATTGGGCCTGCGGCTACTAAGAAACCAGCCAGTGGTGGACAGCAATATCAGAAAGCTTCCTACCCAAGTACTCAAGGAAATCCAGGCGAAGCTGATCCAAATAATACAACAATATTTGTTGGGGGTCTGGATCCGAGTGTGAATGATGACATGTTGAGGCAAGTTTTCAGTCAGTTTGGTGAGCTTGTTCATGTGAAGATACCAGTAGGCAAGCGTTGTGGTTTTGTTCAATTTGCGAACAGATCTTGTGCGGAGCAAGCATTGGGATCGTTGAATGGAACACAATTGGGAGGACAAAGTATTCGGCTTTCATGGGGCCGCAGTCCTACAAGCAAACAGAACCAGCCAGATCAGGCACAGTGGAATGGCGCTGGTGGTGCTGGATTTTATGGATATCCACAAGGATATGATGCATATTCGTACGCACCTCCTCCAGCCCAAGATCCTGCCATGTATTATGGAGGCTATGCTGCTGGATACGGAAACTACCAGCAGCCTGGTGCATACCAACAGCAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

409

Amino Acids

44.82

Weight (kDa)

5.52

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	70 - 138	1.1e-09	RNA recognition motif
RRM_1	PF00076	163 - 232	4e-15	RNA recognition motif
RRM_5	PF13893	254 - 352	1.2e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	272 - 336	2.8e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	734
AccII	CGCG	2 cut(s)	170, 357
AciI	CCGC	8 cut(s)	53, 80, 101, 301, 362, 713, 953, 1021
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	4 cut(s)	65, 167, 772, 1124
AfiI	CCNNNNNNNGG	3 cut(s)	20, 37, 734
AflIII	ACRYGT	1 cut(s)	852
AgsI	TTSAA	3 cut(s)	533, 932, 976
AjnI	CCWGG	3 cut(s)	184, 784, 1198
AluBI	AGCT	5 cut(s)	258, 310, 758, 794, 886
AluI	AGCT	5 cut(s)	258, 310, 758, 794, 886
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	357, 451
Alw44I	GTGCAC	1 cut(s)	26
AoxI	GGCC	5 cut(s)	115, 145, 673, 707, 1018
ApaLI	GTGCAC	1 cut(s)	26
ApeKI	GCWGC	9 cut(s)	55, 58, 82, 226, 258, 359, 506, 1172, 1195
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	987, 1019
AspA2I	CCTAGG	1 cut(s)	442
AspLEI	GCGC	3 cut(s)	157, 359, 1073
AspS9I	GGNCC	7 cut(s)	115, 145, 266, 473, 591, 707, 1018
AsuHPI	GGTGA	3 cut(s)	230, 653, 893
AvaII	GGWCC	3 cut(s)	266, 473, 591
AvrII	CCTAGG	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	675
BamHI	GGATCC	2 cut(s)	49, 832
BanI	GGYRCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	2 cut(s)	159, 254
BbvI	GCAGC	9 cut(s)	67, 70, 94, 213, 245, 346, 493, 1159, 1207
BccI	CCATC	3 cut(s)	22, 229, 464
BcgI	CGANNNNNNTGC	2 cut(s)	951, 985
BciT130I	CCWGG	3 cut(s)	186, 786, 1200
BciVI	GTATCC	1 cut(s)	1172
BcoDI	GTCTC	2 cut(s)	357, 451
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	227
BfoI	RGCGCY	2 cut(s)	158, 1074
BfuI	GTATCC	1 cut(s)	1172
BglI	GCCNNNNNGGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	944
BlnI	CCTAGG	1 cut(s)	442
BlpI	GCTNAGC	1 cut(s)	366
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	3 cut(s)	186, 786, 1200
Bme18I	GGWCC	3 cut(s)	266, 473, 591
BmgT120I	GGNCC	7 cut(s)	115, 145, 266, 473, 591, 707, 1018
BmiI	GGNNCC	8 cut(s)	42, 51, 146, 156, 190, 268, 834, 1019
BmrFI	CCNGG	3 cut(s)	186, 786, 1200
BmsI	GCATC	2 cut(s)	87, 1102
BpmI	CTGGAG	1 cut(s)	1119
Bpu10I	CCTNAGC	3 cut(s)	132, 159, 254
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	442, 606
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 37, 734
Bse1I	ACTGG	3 cut(s)	676, 732, 905
BseBI	CCWGG	3 cut(s)	186, 786, 1200
BseDI	CCNNGG	2 cut(s)	442, 606
BseGI	GGATG	3 cut(s)	96, 240, 472
BseLI	CCNNNNNNNGG	3 cut(s)	20, 37, 734
BseMII	CTCAG	5 cut(s)	146, 173, 268, 357, 654
BseNI	ACTGG	3 cut(s)	676, 732, 905
BseRI	GAGGAG	2 cut(s)	36, 1122
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	9 cut(s)	67, 70, 94, 213, 245, 346, 493, 1159, 1207
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	2 cut(s)	170, 357
BshFI	GGCC	5 cut(s)	117, 147, 675, 709, 1020
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	273
BsiWI	CGTACG	1 cut(s)	1122
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	3 cut(s)	20, 37, 734
BsmAI	GTCTC	2 cut(s)	357, 451
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	5 cut(s)	117, 147, 675, 709, 1020
Bso31I	GGTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	8 cut(s)	53, 80, 101, 301, 362, 713, 953, 1021
BspANI	GGCC	5 cut(s)	117, 147, 675, 709, 1020
BspCNI	CTCAG	5 cut(s)	145, 172, 267, 358, 655
BspFNI	CGCG	2 cut(s)	170, 357
BspLI	GGNNCC	8 cut(s)	42, 51, 146, 156, 190, 268, 834, 1019
BspMAI	CTGCAG	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	357
BsrI	ACTGG	3 cut(s)	676, 732, 905
BssECI	CCNNGG	2 cut(s)	442, 606
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	442, 606
Bst2UI	CCWGG	3 cut(s)	186, 786, 1200
Bst4CI	ACNGT	2 cut(s)	487, 1062
BstACI	GRCGYC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstC8I	GCNNGC	7 cut(s)	149, 153, 451, 654, 711, 914, 960
BstDEI	CTNAG	6 cut(s)	132, 159, 254, 366, 663, 720
BstF5I	GGATG	3 cut(s)	96, 240, 472
BstFNI	CGCG	2 cut(s)	170, 357
BstH2I	RGCGCY	2 cut(s)	158, 1074
BstHHI	GCGC	3 cut(s)	157, 359, 1073
BstMAI	GTCTC	2 cut(s)	357, 451
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 82, 106, 128, 287, 376, 681, 959, 1079
BstNI	CCWGG	3 cut(s)	186, 786, 1200
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	3 cut(s)	184, 784, 1198
BstSFI	CTRYAG	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	30
BstUI	CGCG	2 cut(s)	170, 357
BstV1I	GCAGC	9 cut(s)	67, 70, 94, 213, 245, 346, 493, 1159, 1207
BstX2I	RGATCY	5 cut(s)	49, 198, 832, 944, 1144
BstXI	CCANNNNNNTGG	1 cut(s)	1199
BstYI	RGATCY	5 cut(s)	49, 198, 832, 944, 1144
BsuI	GTATCC	1 cut(s)	1172
BsuRI	GGCC	5 cut(s)	117, 147, 675, 709, 1020
BtsCI	GGATG	3 cut(s)	96, 240, 472
BtsI	GCAGTG	2 cut(s)	92, 236
BtsIMutI	CAGTG	4 cut(s)	92, 236, 739, 1067
Cac8I	GCNNGC	7 cut(s)	149, 153, 451, 654, 711, 914, 960
CfoI	GCGC	3 cut(s)	157, 359, 1073
Cfr13I	GGNCC	7 cut(s)	115, 145, 266, 473, 591, 707, 1018
Csp6I	GTAC	4 cut(s)	64, 166, 771, 1123
CspCI	CAANNNNNGTGG	2 cut(s)	901, 936
CviAII	CATG	5 cut(s)	658, 853, 893, 1014, 1153
CviQI	GTAC	4 cut(s)	64, 166, 771, 1123
DdeI	CTNAG	6 cut(s)	132, 159, 254, 366, 663, 720
DinI	GGCGCC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	673
Eco130I	CCWWGG	2 cut(s)	442, 606
Eco31I	GGTCTC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	1097
Eco47I	GGWCC	3 cut(s)	266, 473, 591
EcoRII	CCWGG	3 cut(s)	184, 784, 1198
EcoRV	GATATC	1 cut(s)	1097
EcoT14I	CCWWGG	2 cut(s)	442, 606
EcoT22I	ATGCAT	1 cut(s)	1117
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	442, 606
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	5 cut(s)	661, 856, 896, 1017, 1156
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	5 cut(s)	657, 852, 892, 1013, 1152
FokI	GGATG	3 cut(s)	103, 247, 479
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	3 cut(s)	156, 358, 1072
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	1119
HaeII	RGCGCY	2 cut(s)	158, 1074
HaeIII	GGCC	5 cut(s)	117, 147, 675, 709, 1020
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	3 cut(s)	157, 359, 1073
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	5 cut(s)	661, 856, 896, 1017, 1156
Hin6I	GCGC	3 cut(s)	155, 357, 1071
HinP1I	GCGC	3 cut(s)	155, 357, 1071
HindIII	AAGCTT	2 cut(s)	308, 756
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	3 cut(s)	230, 653, 893
Hpy166II	GTNNAC	3 cut(s)	28, 286, 740
Hpy188I	TCNGA	6 cut(s)	49, 193, 203, 425, 753, 837
Hpy188III	TCNNGA	5 cut(s)	18, 211, 476, 533, 830
Hpy8I	GTNNAC	3 cut(s)	28, 286, 740
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	135, 320
HpyCH4III	ACNGT	2 cut(s)	487, 1062
HpyCH4V	TGCA	7 cut(s)	7, 28, 229, 379, 572, 1115, 1205
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 82, 106, 128, 287, 376, 681, 959, 1079
HpyF3I	CTNAG	6 cut(s)	132, 159, 254, 366, 663, 720
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	5 cut(s)	661, 856, 896, 1017, 1156
HspAI	GCGC	3 cut(s)	155, 357, 1071
KasI	GGCGCC	1 cut(s)	154
LmnI	GCTCC	3 cut(s)	194, 412, 955
Lsp1109I	GCAGC	9 cut(s)	67, 70, 94, 213, 245, 346, 493, 1159, 1207
LweI	GCATC	2 cut(s)	87, 1102
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	3 cut(s)	218, 514, 580
MboII	GAAGA	1 cut(s)	910
MfeI	CAATTG	2 cut(s)	647, 986
MflI	RGATCY	5 cut(s)	49, 198, 832, 944, 1144
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	6 cut(s)	418, 430, 550, 647, 932, 986
MluNI	TGGCCA	1 cut(s)	675
Mly113I	GGCGCC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	27
Mox20I	TGGCCA	1 cut(s)	675
Mph1103I	ATGCAT	1 cut(s)	1117
MscI	TGGCCA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	3 cut(s)	186, 786, 1200
MunI	CAATTG	2 cut(s)	647, 986
MvaI	CCWGG	3 cut(s)	186, 786, 1200
MvnI	CGCG	2 cut(s)	170, 357
MwoI	GCNNNNNNNGC	9 cut(s)	67, 82, 106, 128, 287, 376, 681, 959, 1079
NarI	GGCGCC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	661, 856, 896, 1017, 1156
NlaIV	GGNNCC	8 cut(s)	42, 51, 146, 156, 190, 268, 834, 1019
NmuCI	GTSAC	2 cut(s)	218, 514
NsiI	ATGCAT	1 cut(s)	1117
NspI	RCATGY	1 cut(s)	856
PciI	ACATGT	1 cut(s)	852
PfeI	GAWTC	1 cut(s)	181
Pfl23II	CGTACG	1 cut(s)	1122
PflMI	CCANNNNNTGG	1 cut(s)	734
PluTI	GGCGCC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	852
Psp6I	CCWGG	3 cut(s)	184, 784, 1198
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	3 cut(s)	184, 784, 1198
PspLI	CGTACG	1 cut(s)	1122
PspN4I	GGNNCC	8 cut(s)	42, 51, 146, 156, 190, 268, 834, 1019
PspPI	GGNCC	7 cut(s)	115, 145, 266, 473, 591, 707, 1018
PstI	CTGCAG	1 cut(s)	231
PsuI	RGATCY	5 cut(s)	49, 198, 832, 944, 1144
PvuII	CAGCTG	1 cut(s)	258
RsaI	GTAC	4 cut(s)	65, 167, 772, 1124
RsaNI	GTAC	4 cut(s)	64, 166, 771, 1123
RseI	CAYNNNNRTG	1 cut(s)	398
Sau96I	GGNCC	7 cut(s)	115, 145, 266, 473, 591, 707, 1018
ScaI	AGTACT	1 cut(s)	772
ScrFI	CCNGG	3 cut(s)	186, 786, 1200
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	2 cut(s)	87, 1102
SfcI	CTRYAG	1 cut(s)	227
SfoI	GGCGCC	1 cut(s)	156
SinI	GGWCC	3 cut(s)	266, 473, 591
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	774
SmoI	CTYRAG	1 cut(s)	774
Sse9I	AATT	6 cut(s)	418, 430, 550, 647, 932, 986
SsiI	CCGC	8 cut(s)	53, 80, 101, 301, 362, 713, 953, 1021
SspDI	GGCGCC	1 cut(s)	154
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	184, 784, 1198
StyI	CCWWGG	2 cut(s)	442, 606
TaaI	ACNGT	2 cut(s)	487, 1062
TaqI	TCGA	1 cut(s)	342
TasI	AATT	6 cut(s)	418, 430, 550, 647, 932, 986
TatI	WGTACW	1 cut(s)	770
TauI	GCSGC	4 cut(s)	103, 365, 716, 1023
TfiI	GAWTC	1 cut(s)	181
TscAI	CASTG	4 cut(s)	92, 236, 739, 1067
TseFI	GTSAC	2 cut(s)	218, 514
TseI	GCWGC	9 cut(s)	55, 58, 82, 226, 258, 359, 506, 1172, 1195
Tsp45I	GTSAC	2 cut(s)	218, 514
TspDTI	ATGAA	3 cut(s)	683, 881, 1002
TspGWI	ACGGA	3 cut(s)	33, 425, 1197
TspRI	CASTG	4 cut(s)	92, 236, 739, 1067
Van91I	CCANNNNNTGG	1 cut(s)	734
VneI	GTGCAC	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	266, 473, 591
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84
XmaJI	CCTAGG	1 cut(s)	442
XspI	CTAG	1 cut(s)	443
ZrmI	AGTACT	1 cut(s)	772
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.