Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Forward (+)

33553739 .. 33556904

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG269000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATGAGAACTACATCCTCAACTGCTTCGGTCCCACCGGAGAGGCTGTGAATGCAAAGGTTATCCGTAACAAGCAAACAGGACTGCCAGAAGGGTATGGTTTTATTGAGTTTAGGACTCGCAGCGCCGCTGAGCAGGTTTTGCAGAACTACAATGGTACAGTGATGCCCAGCACTGAGCAGAATTTCCGCCTCAACTGGGCCACCCTGGGGGCTGGTGAAAGGCGCCAGGATGATGGCCCGGACTATACTGTTTTTGTTGGCGATTTGGCAGCTGATGTTACCGATTATACCCTTCAAGAGACATTTAGGGCTCATTACCACTCTGTGAAGGGTGCAAAAGTTGTCACTGATAGGACCACCGGACGCTCTAAGGGATATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGTTGCGAGCAATGAATGAGATGAATGGTCAGTTTTGCTCTAGCAGACCCATGAGGATTGGGCCTGCTGCTACTAAGAAACCAGTTGGTGGTGGACAACCTTATCAAAAAGCTGCCTACCCAAGTTCTCAAGGAAATCCAGGCGAGGCTGACCCAAATAACACAACAATATTTGTTGGGGGTTTGGATCCCAGTGTCGATGATGAAATGTTGAGACAATCTTTTGGCATGTTTGGTGAGCTAGTTCATGTGAAGATACCAGTTGGCAAGCGATGTGGTTTTGTTCAATTTGCTAACAGAGCTTGTGCGGAGCAAGCATTGTCGGTGATGAATGGGCGAGTAGTGGGATCACAAAGTGTTAGGCTTTCTTGGGGCCGTAGTCCTTCAAGCAAACAGAACCAGCCAGAACAGACACAGTGGAATGGTGCTGGTGGTGCTGGATTTTATCAATATCCCCAAGGATATGATGCGTATACATATGCACCTCCTGCCCAAGACCCTAACCTGTACTATGGAGGGTATGCTGGATATGGAAATTACCAGCAGCCTGGTGCAGCTTACCAACAGCAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

329

Amino Acids

36.08

Weight (kDa)

6.34

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	2 - 59	1.2e-09	RNA recognition motif
RRM_1	PF00076	85 - 155	5.4e-15	RNA recognition motif
RRM_1	PF00076	194 - 257	1.3e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	884
AciI	CCGC	3 cut(s)	129, 190, 719
AclWI	GGATC	3 cut(s)	593, 606, 766
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	226
AdeI	CACNNNGTG	2 cut(s)	328, 767
AfaI	GTAC	2 cut(s)	160, 920
AfiI	CCNNNNNNNGG	3 cut(s)	199, 210, 500
AgsI	TTSAA	3 cut(s)	299, 698, 798
AjnI	CCWGG	4 cut(s)	207, 228, 550, 958
AluBI	AGCT	5 cut(s)	275, 524, 652, 713, 968
AluI	AGCT	5 cut(s)	275, 524, 652, 713, 968
Alw26I	GTCTC	2 cut(s)	296, 619
AlwI	GGATC	3 cut(s)	593, 606, 766
AoxI	GGCC	4 cut(s)	201, 238, 473, 784
ApeKI	GCWGC	6 cut(s)	123, 272, 479, 524, 955, 965
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	2 cut(s)	128, 228
AspS9I	GGNCC	6 cut(s)	32, 201, 239, 357, 473, 784
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	230, 659, 748
AvaII	GGWCC	2 cut(s)	32, 357
BamHI	GGATCC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	316
BbvI	GCAGC	6 cut(s)	135, 284, 466, 511, 967, 977
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	771
BciT130I	CCWGG	4 cut(s)	209, 230, 552, 960
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	296, 619
BfaI	CTAG	2 cut(s)	453, 653
BfoI	RGCGCY	2 cut(s)	129, 229
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	7 cut(s)	124, 129, 273, 480, 525, 956, 966
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	7 cut(s)	125, 130, 274, 481, 526, 957, 967
Bme1390I	CCNGG	5 cut(s)	209, 230, 242, 552, 960
Bme18I	GGWCC	2 cut(s)	32, 357
BmgT120I	GGNCC	6 cut(s)	32, 201, 239, 357, 473, 784
BmiI	GGNNCC	4 cut(s)	34, 227, 600, 785
BmrFI	CCNGG	5 cut(s)	209, 230, 242, 552, 960
BmrI	ACTGGG	2 cut(s)	208, 597
BmsI	GCATC	2 cut(s)	156, 868
BmuI	ACTGGG	2 cut(s)	208, 597
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	226
BsaJI	CCNNGG	3 cut(s)	207, 208, 868
BsaWI	WCCGGW	2 cut(s)	38, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 210, 500
Bse1I	ACTGG	4 cut(s)	203, 494, 603, 671
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	4 cut(s)	209, 230, 552, 960
BseDI	CCNNGG	3 cut(s)	207, 208, 868
BseGI	GGATG	3 cut(s)	10, 15, 238
BseLI	CCNNNNNNNGG	3 cut(s)	199, 210, 500
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	123, 168
BseNI	ACTGG	4 cut(s)	203, 494, 603, 671
BseXI	GCAGC	6 cut(s)	135, 284, 466, 511, 967, 977
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	984
BshFI	GGCC	4 cut(s)	203, 240, 475, 786
BshNI	GGYRCC	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	39, 242, 363
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	199, 210, 500
BsmAI	GTCTC	2 cut(s)	296, 619
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	4 cut(s)	203, 240, 475, 786
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	598, 758
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	3 cut(s)	129, 190, 719
BspANI	GGCC	4 cut(s)	203, 240, 475, 786
BspCNI	CTCAG	2 cut(s)	124, 169
BspLI	GGNNCC	4 cut(s)	34, 227, 600, 785
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	3 cut(s)	593, 606, 766
BspT107I	GGYRCC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	4 cut(s)	203, 494, 603, 671
BssECI	CCNNGG	3 cut(s)	207, 208, 868
BssMI	GATC	2 cut(s)	598, 758
BssNAI	GTATAC	1 cut(s)	885
BssNI	GRCGYC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	868
Bst1107I	GTATAC	1 cut(s)	885
Bst2UI	CCWGG	4 cut(s)	209, 230, 552, 960
Bst4CI	ACNGT	4 cut(s)	163, 253, 414, 828
BstACI	GRCGYC	1 cut(s)	226
BstAPI	GCANNNNNTGC	2 cut(s)	142, 899
BstC8I	GCNNGC	4 cut(s)	420, 477, 680, 726
BstDEI	CTNAG	4 cut(s)	132, 177, 372, 486
BstF5I	GGATG	3 cut(s)	10, 15, 238
BstH2I	RGCGCY	2 cut(s)	129, 229
BstHHI	GCGC	2 cut(s)	128, 228
BstKTI	GATC	2 cut(s)	601, 761
BstMAI	GTCTC	2 cut(s)	296, 619
BstMBI	GATC	2 cut(s)	598, 758
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 142, 710, 725, 845, 899
BstNI	CCWGG	4 cut(s)	209, 230, 552, 960
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	5 cut(s)	207, 228, 240, 550, 958
BstV1I	GCAGC	6 cut(s)	135, 284, 466, 511, 967, 977
BstX2I	RGATCY	1 cut(s)	598
BstXI	CCANNNNNNTGG	2 cut(s)	236, 959
BstYI	RGATCY	1 cut(s)	598
BstZ17I	GTATAC	1 cut(s)	885
BsuRI	GGCC	4 cut(s)	203, 240, 475, 786
BtgZI	GCGATG	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	10, 15, 238
BtsIMutI	CAGTG	5 cut(s)	168, 174, 348, 610, 833
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	4 cut(s)	420, 477, 680, 726
CfoI	GCGC	2 cut(s)	128, 228
Cfr13I	GGNCC	6 cut(s)	32, 201, 239, 357, 473, 784
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	159, 919
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	3 cut(s)	463, 640, 659
CviQI	GTAC	2 cut(s)	159, 919
DdeI	CTNAG	4 cut(s)	132, 177, 372, 486
DinI	GGCGCC	1 cut(s)	227
DpnI	GATC	2 cut(s)	600, 760
DpnII	GATC	2 cut(s)	598, 758
DraIII	CACNNNGTG	2 cut(s)	328, 767
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	868
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	32, 357
EcoRII	CCWGG	4 cut(s)	207, 228, 550, 958
EcoT14I	CCWWGG	1 cut(s)	868
EcoT38I	GRGCYC	1 cut(s)	316
EgeI	GGCGCC	1 cut(s)	227
EheI	GGCGCC	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	868
FaeI	CATG	3 cut(s)	466, 643, 662
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	462, 639, 658
FauNDI	CATATG	1 cut(s)	889
FblI	GTMKAC	1 cut(s)	884
Fnu4HI	GCNGC	7 cut(s)	124, 129, 273, 480, 525, 956, 966
FokI	GGATG	3 cut(s)	2, 17, 245
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	7 cut(s)	124, 129, 273, 480, 525, 956, 966
FspBI	CTAG	2 cut(s)	453, 653
GlaI	GCGC	2 cut(s)	127, 227
GluI	GCNGC	7 cut(s)	124, 129, 273, 480, 525, 956, 966
GsaI	CCCAGC	1 cut(s)	174
HaeII	RGCGCY	2 cut(s)	129, 229
HaeIII	GGCC	4 cut(s)	203, 240, 475, 786
HapII	CCGG	3 cut(s)	39, 242, 363
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	2 cut(s)	128, 228
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	466, 643, 662
Hin6I	GCGC	2 cut(s)	126, 226
HinP1I	GCGC	2 cut(s)	126, 226
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	3 cut(s)	39, 242, 363
HphI	GGTGA	3 cut(s)	230, 659, 748
Hpy166II	GTNNAC	3 cut(s)	410, 506, 885
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	3 cut(s)	410, 506, 885
HpyAV	CCTTC	4 cut(s)	86, 305, 325, 804
HpyCH4III	ACNGT	4 cut(s)	163, 253, 414, 828
HpyCH4V	TGCA	5 cut(s)	56, 145, 338, 893, 965
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 142, 710, 725, 845, 899
HpyF3I	CTNAG	4 cut(s)	132, 177, 372, 486
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	466, 643, 662
HspAI	GCGC	2 cut(s)	126, 226
KasI	GGCGCC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	598, 758
LmnI	GCTCC	1 cut(s)	721
Lsp1109I	GCAGC	6 cut(s)	135, 284, 466, 511, 967, 977
LweI	GCATC	2 cut(s)	156, 868
MaeI	CTAG	2 cut(s)	453, 653
MaeIII	GTNAC	3 cut(s)	68, 280, 346
MalI	GATC	2 cut(s)	600, 760
MboI	GATC	2 cut(s)	598, 758
MboII	GAAGA	1 cut(s)	676
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	184, 698, 946
Mly113I	GGCGCC	1 cut(s)	226
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	7 cut(s)	29, 37, 203, 459, 550, 906, 920
MspA1I	CMGCKG	2 cut(s)	131, 275
MspI	CCGG	3 cut(s)	39, 242, 363
MspR9I	CCNGG	5 cut(s)	209, 230, 242, 552, 960
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	4 cut(s)	209, 230, 552, 960
MwoI	GCNNNNNNNGC	6 cut(s)	53, 142, 710, 725, 845, 899
NarI	GGCGCC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	242
NdeI	CATATG	1 cut(s)	889
NdeII	GATC	2 cut(s)	598, 758
NlaIII	CATG	3 cut(s)	466, 643, 662
NlaIV	GGNNCC	4 cut(s)	34, 227, 600, 785
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	643
PasI	CCCWGGG	1 cut(s)	208
PctI	GAATGC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	7 cut(s)	125, 130, 274, 481, 526, 957, 967
PleI	GAGTC	1 cut(s)	112
PluTI	GGCGCC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	112
Psp6I	CCWGG	4 cut(s)	207, 228, 550, 958
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	4 cut(s)	207, 228, 550, 958
PspN4I	GGNNCC	4 cut(s)	34, 227, 600, 785
PspPI	GGNCC	6 cut(s)	32, 201, 239, 357, 473, 784
PsuI	RGATCY	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	160, 920
RsaNI	GTAC	2 cut(s)	159, 919
SatI	GCNGC	7 cut(s)	124, 129, 273, 480, 525, 956, 966
Sau3AI	GATC	2 cut(s)	598, 758
Sau96I	GGNCC	6 cut(s)	32, 201, 239, 357, 473, 784
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	5 cut(s)	209, 230, 242, 552, 960
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	156, 868
SfoI	GGCGCC	1 cut(s)	227
SinI	GGWCC	2 cut(s)	32, 357
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
Sse9I	AATT	3 cut(s)	184, 698, 946
SsiI	CCGC	3 cut(s)	129, 190, 719
SspDI	GGCGCC	1 cut(s)	225
SspI	AATATT	1 cut(s)	582
SspMI	CTAG	2 cut(s)	453, 653
StyD4I	CCNGG	5 cut(s)	207, 228, 240, 550, 958
StyI	CCWWGG	1 cut(s)	868
TaaI	ACNGT	4 cut(s)	163, 253, 414, 828
TaqI	TCGA	1 cut(s)	609
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	184, 698, 946
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	1 cut(s)	131
TscAI	CASTG	5 cut(s)	168, 181, 355, 610, 833
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	6 cut(s)	123, 272, 479, 524, 955, 965
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	5 cut(s)	440, 449, 630, 647, 755
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	5 cut(s)	168, 181, 355, 610, 833
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	32, 357
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	884
XspI	CTAG	2 cut(s)	453, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.