Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010651

Physical Location & Seq

Genomic Coordinates Forward (+)

15536390 .. 15540681

Gene Structure 4292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGATGCAACAGCCATCAGGAGGAGTCGTCCCGGCGGATCAGCAACCCCAGCAGTACCAGCAGCAACCGCCGCAGCAGTGGATGATGATGCCGCCGCAGCAGCAGCACCAGGCTGCTCAGGCGGCCCAGGCCGGGTGGGCCCAGCAGCAGCAACAGGCTGCGATGCAACAGCAGCCTCAGCAGTACTCCGCCGCGGGGGCGGCGGGTCAGGGCTCCGATGAGATCCGATCGCTCTGGATCGGCGACTTGCTTCAGTGGATGGACGAGAACTACATCCTCAACTGCTTCGGTCCCACAGGAGAGGCTGTGAATGCTAAGGTTATCCGTAACAAGCAAACAGGGTTGCCAGAAGGCTATGGTTTTATCGAGTTTAGGACTCGCAGTGCTGCTGAGCAGGTCTTGCAGAACTACAATGGTACAGTGATGCCAAACACTGAGCAGAATTTCCGCCTCAACTGGGCCACCCTGGGTGCTGGTGAAAGGCGCCAGGATGATGGCCCAGACTACACTGTTTTCGTTGGGGATTTGGCGGCTGATGTTACTGATTACACTCTTCAAGAGACATTTAGGGCTCATTACCACTCTGTAAAGGGTGCGAAAGTTGTCACTGATAGGACCACCGGACGCTCTAAGGGATACGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGTTGAGAGCAATGAATGAGATGAATGGTCAGTTTTGCTCAAGCAGACCCATGAGGATTGGGCCTGCTGCTACTAAGAAACCAGTTGGTGGTGGACAACCATTTCAGAAAGCTGCCTACCCAAGTACTCAAGGAAATCCTGGTGAGGCTGACCCAAATAACACAACAATATTTGTTGGGGGTCTGGATCCCAGTGTTGATGATGAAATGTTGAGACAAGCATTTGGCATTTTTGGTGAGCTAGTTCATGTCAAGATACCAGTTGGCAAGCGATGTGGTTTTGTTCAATTTGCTAACAGAGCTTGTGCAGAGCAAGCATTGTCGGTGATGAATGGGCGAGTAGTGGGATCACAAAGTGTTAGACTTTCTTGGGGCCGCAGTCCTACAAGCAAACAGAACCAGCCAGAACAAACACAGTGGAATGGTGCTGGTGGTGCTGGATTCTATCAATATCCCCAAGGATATGATGCGTATACATATGCGCCTCCTGCCCAAGACCCTAACTTGTACTATGGAGGGTATGCTGGATATGGAAATTACCAGCAGCCAGGTGCAGCGTACCAGCAGCAACAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008143 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070717 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

416

Amino Acids

45.64

Weight (kDa)

5.68

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	78 - 146	5.7e-11	RNA recognition motif
RRM_1	PF00076	171 - 241	7.9e-15	RNA recognition motif
RRM_1	PF00076	280 - 343	1.1e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27000 AT5G54900
fragaria_vesca	FvH4_3g22530
malus_domestica	MD03G1202200.v1.1 MD11G1219500.v1.1 MD11G1219600.v1.1
prunus_persica	Prupe.4G211700_v2.0.a1
pyrus_communis	pycom03g15360 pycom11g19340
rosa_chinensis	RchiOBHm_Chr5g0039271
rosa_laevigata	RLG00000033901
rosa_multiflora	Rmu_sc0033883.1_g000002 Rmu_ssc0000410.1_g000047
rosa_roxburghii	Rroxscaffold_1G00040460 Rroxscaffold_1G00041870
rosa_rugosa	Rorug05G0177400
rosa_samantha	Rh5BG269000 Rh5CG302000 Rh5DG276700
rosa_wichuraiana	Rw5G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	1142
AccII	CGCG	1 cut(s)	194
AclWI	GGATC	6 cut(s)	45, 217, 245, 851, 864, 1024
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	484
AdeI	CACNNNGTG	1 cut(s)	1025
AfaI	GTAC	6 cut(s)	56, 185, 418, 796, 1178, 1229
AfiI	CCNNNNNNNGG	5 cut(s)	20, 132, 195, 457, 758
AgsI	TTSAA	2 cut(s)	557, 956
AjnI	CCWGG	6 cut(s)	108, 126, 465, 486, 808, 1216
AluBI	AGCT	3 cut(s)	782, 910, 971
AluI	AGCT	3 cut(s)	782, 910, 971
Alw26I	GTCTC	2 cut(s)	554, 877
AlwI	GGATC	6 cut(s)	45, 217, 245, 851, 864, 1024
AoxI	GGCC	7 cut(s)	123, 129, 138, 459, 496, 731, 1042
ApaI	GGGCCC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	486, 1153
AspS9I	GGNCC	9 cut(s)	124, 138, 139, 290, 459, 497, 615, 731, 1042
AsuC2I	CCSGG	2 cut(s)	32, 133
AsuHPI	GGTGA	4 cut(s)	488, 824, 917, 1006
AvaII	GGWCC	2 cut(s)	290, 615
BaeGI	GKGCMC	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	856
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	3 cut(s)	142, 215, 574
BbvCI	CCTCAGC	1 cut(s)	177
BccI	CCATC	3 cut(s)	22, 253, 488
BciT130I	CCWGG	6 cut(s)	110, 128, 467, 488, 810, 1218
BciVI	GTATCC	1 cut(s)	629
BcnI	CCSGG	2 cut(s)	32, 133
BcoDI	GTCTC	2 cut(s)	554, 877
BfaI	CTAG	1 cut(s)	911
BfoI	RGCGCY	1 cut(s)	487
BfuAI	ACCTGC	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	629
BglI	GCCNNNNNGGC	2 cut(s)	137, 197
BlpI	GCTNAGC	1 cut(s)	390
BmcAI	AGTACT	2 cut(s)	185, 796
Bme1390I	CCNGG	8 cut(s)	32, 110, 128, 133, 467, 488, 810, 1218
Bme18I	GGWCC	2 cut(s)	290, 615
BmgT120I	GGNCC	9 cut(s)	124, 138, 139, 290, 459, 497, 615, 731, 1042
BmiI	GGNNCC	6 cut(s)	140, 214, 292, 485, 858, 1043
BmrFI	CCNGG	8 cut(s)	32, 110, 128, 133, 467, 488, 810, 1218
BmrI	ACTGGG	2 cut(s)	466, 855
BmsI	GCATC	4 cut(s)	78, 153, 414, 1126
BmuI	ACTGGG	2 cut(s)	466, 855
Bpu10I	CCTNAGC	3 cut(s)	117, 177, 315
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	694, 783
BpuMI	CCSGG	2 cut(s)	32, 133
BsaHI	GRCGYC	1 cut(s)	484
BsaJI	CCNNGG	5 cut(s)	126, 192, 465, 466, 1126
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 291, 321
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 132, 195, 457, 758
Bse1I	ACTGG	4 cut(s)	461, 752, 861, 929
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	6 cut(s)	110, 128, 467, 488, 810, 1218
BseDI	CCNNGG	5 cut(s)	126, 192, 465, 466, 1126
BseGI	GGATG	4 cut(s)	87, 264, 273, 496
BseLI	CCNNNNNNNGG	5 cut(s)	20, 132, 195, 457, 758
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	4 cut(s)	131, 191, 381, 426
BseNI	ACTGG	4 cut(s)	461, 752, 861, 929
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	142
BseYI	CCCAGC	2 cut(s)	48, 141
BsgI	GTGCAG	2 cut(s)	996, 1242
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	7 cut(s)	125, 131, 140, 461, 498, 733, 1044
BshNI	GGYRCC	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	32, 132, 621
BslFI	GGGAC	2 cut(s)	14, 276
BslI	CCNNNNNNNGG	5 cut(s)	20, 132, 195, 457, 758
BsmAI	GTCTC	2 cut(s)	554, 877
BsmFI	GGGAC	2 cut(s)	14, 276
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	7 cut(s)	125, 131, 140, 461, 498, 733, 1044
Bsp120I	GGGCCC	1 cut(s)	138
Bsp1286I	GDGCHC	3 cut(s)	142, 215, 574
Bsp143I	GATC	6 cut(s)	37, 222, 227, 237, 856, 1016
Bsp1720I	GCTNAGC	1 cut(s)	390
BspANI	GGCC	7 cut(s)	125, 131, 140, 461, 498, 733, 1044
BspCNI	CTCAG	4 cut(s)	130, 190, 382, 427
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	6 cut(s)	140, 214, 292, 485, 858, 1043
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	6 cut(s)	45, 217, 245, 851, 864, 1024
BspT107I	GGYRCC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	4 cut(s)	461, 752, 861, 929
BssECI	CCNNGG	5 cut(s)	126, 192, 465, 466, 1126
BssMI	GATC	6 cut(s)	37, 222, 227, 237, 856, 1016
BssNAI	GTATAC	1 cut(s)	1143
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	1126
Bst1107I	GTATAC	1 cut(s)	1143
Bst2UI	CCWGG	6 cut(s)	110, 128, 467, 488, 810, 1218
Bst4CI	ACNGT	5 cut(s)	421, 511, 641, 672, 1086
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	484
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	735, 938, 984
BstDEI	CTNAG	7 cut(s)	117, 177, 315, 390, 435, 630, 744
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	4 cut(s)	87, 264, 273, 496
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	486, 1153
BstKTI	GATC	6 cut(s)	40, 225, 230, 240, 859, 1019
BstMAI	GTCTC	2 cut(s)	554, 877
BstMBI	GATC	6 cut(s)	37, 222, 227, 237, 856, 1016
BstMCI	CGRYCG	1 cut(s)	230
BstNI	CCWGG	6 cut(s)	110, 128, 467, 488, 810, 1218
BstSCI	CCNGG	8 cut(s)	30, 108, 126, 131, 465, 486, 808, 1216
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	222, 856
BstXI	CCANNNNNNTGG	1 cut(s)	494
BstYI	RGATCY	2 cut(s)	222, 856
BstZ17I	GTATAC	1 cut(s)	1143
BsuI	GTATCC	1 cut(s)	629
BsuRI	GGCC	7 cut(s)	125, 131, 140, 461, 498, 733, 1044
BtgI	CCRYGG	1 cut(s)	192
BtgZI	GCGATG	2 cut(s)	176, 955
BtsCI	GGATG	4 cut(s)	87, 264, 273, 496
BtsI	GCAGTG	2 cut(s)	83, 388
BtsIMutI	CAGTG	9 cut(s)	83, 260, 388, 426, 432, 507, 606, 868, 1091
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	3 cut(s)	735, 938, 984
CfoI	GCGC	2 cut(s)	486, 1153
Cfr13I	GGNCC	9 cut(s)	124, 138, 139, 290, 459, 497, 615, 731, 1042
Cfr42I	CCGCGG	1 cut(s)	195
CseI	GACGC	1 cut(s)	633
Csp6I	GTAC	6 cut(s)	55, 184, 417, 795, 1177, 1228
CspCI	CAANNNNNGTGG	4 cut(s)	925, 960, 1067, 1102
CviAII	CATG	2 cut(s)	721, 917
CviQI	GTAC	6 cut(s)	55, 184, 417, 795, 1177, 1228
DdeI	CTNAG	7 cut(s)	117, 177, 315, 390, 435, 630, 744
DinI	GGCGCC	1 cut(s)	485
DpnI	GATC	6 cut(s)	39, 224, 229, 239, 858, 1018
DpnII	GATC	6 cut(s)	37, 222, 227, 237, 856, 1016
DraIII	CACNNNGTG	1 cut(s)	1025
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	3 cut(s)	50, 178, 437
Eco130I	CCWWGG	1 cut(s)	1126
Eco24I	GRGCYC	3 cut(s)	142, 215, 574
Eco47I	GGWCC	2 cut(s)	290, 615
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	6 cut(s)	108, 126, 465, 486, 808, 1216
EcoT14I	CCWWGG	1 cut(s)	1126
EcoT38I	GRGCYC	3 cut(s)	142, 215, 574
EgeI	GGCGCC	1 cut(s)	485
EheI	GGCGCC	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	1126
FaeI	CATG	2 cut(s)	724, 920
FaqI	GGGAC	2 cut(s)	14, 276
FatI	CATG	2 cut(s)	720, 916
FauI	CCCGC	2 cut(s)	187, 196
FauNDI	CATATG	1 cut(s)	1147
FblI	GTMKAC	1 cut(s)	1142
FokI	GGATG	4 cut(s)	94, 260, 271, 503
FriOI	GRGCYC	3 cut(s)	142, 215, 574
FspBI	CTAG	1 cut(s)	911
GlaI	GCGC	2 cut(s)	485, 1152
GsaI	CCCAGC	2 cut(s)	52, 145
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	7 cut(s)	125, 131, 140, 461, 498, 733, 1044
HapII	CCGG	3 cut(s)	32, 132, 621
HgaI	GACGC	1 cut(s)	633
HhaI	GCGC	2 cut(s)	486, 1153
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	2 cut(s)	724, 920
Hin6I	GCGC	2 cut(s)	484, 1151
HinP1I	GCGC	2 cut(s)	484, 1151
HinfI	GANTC	3 cut(s)	24, 376, 1110
HpaII	CCGG	3 cut(s)	32, 132, 621
HphI	GGTGA	4 cut(s)	488, 824, 917, 1006
Hpy166II	GTNNAC	3 cut(s)	668, 764, 1143
Hpy188I	TCNGA	3 cut(s)	217, 227, 777
Hpy188III	TCNNGA	5 cut(s)	18, 235, 557, 854, 922
Hpy8I	GTNNAC	3 cut(s)	668, 764, 1143
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	5 cut(s)	421, 511, 641, 672, 1086
HpyCH4V	TGCA	5 cut(s)	7, 166, 403, 977, 1223
HpyF3I	CTNAG	7 cut(s)	117, 177, 315, 390, 435, 630, 744
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	2 cut(s)	724, 920
HspAI	GCGC	2 cut(s)	484, 1151
KasI	GGCGCC	1 cut(s)	483
KspI	CCGCGG	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	37, 222, 227, 237, 856, 1016
LmnI	GCTCC	1 cut(s)	218
LweI	GCATC	4 cut(s)	78, 153, 414, 1126
MaeI	CTAG	1 cut(s)	911
MaeIII	GTNAC	3 cut(s)	326, 538, 604
MalI	GATC	6 cut(s)	39, 224, 229, 239, 858, 1018
MboI	GATC	6 cut(s)	37, 222, 227, 237, 856, 1016
MboII	GAAGA	1 cut(s)	545
MflI	RGATCY	2 cut(s)	222, 856
MhlI	GDGCHC	3 cut(s)	142, 215, 574
MluCI	AATT	3 cut(s)	442, 956, 1204
Mly113I	GGCGCC	1 cut(s)	484
MlyI	GAGTC	2 cut(s)	33, 370
MnlI	CCTC	9 cut(s)	14, 186, 287, 295, 461, 717, 808, 1164, 1178
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	32, 132, 621
MspR9I	CCNGG	8 cut(s)	32, 110, 128, 133, 467, 488, 810, 1218
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	6 cut(s)	110, 128, 467, 488, 810, 1218
MvnI	CGCG	1 cut(s)	194
NarI	GGCGCC	1 cut(s)	484
NciI	CCSGG	2 cut(s)	32, 133
NdeI	CATATG	1 cut(s)	1147
NdeII	GATC	6 cut(s)	37, 222, 227, 237, 856, 1016
NlaIII	CATG	2 cut(s)	724, 920
NlaIV	GGNNCC	6 cut(s)	140, 214, 292, 485, 858, 1043
NmuCI	GTSAC	1 cut(s)	604
PasI	CCCWGGG	1 cut(s)	466
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	1110
PflMI	CCANNNNNTGG	1 cut(s)	758
Ple19I	CGATCG	1 cut(s)	230
PleI	GAGTC	2 cut(s)	32, 370
PluTI	GGCGCC	1 cut(s)	487
PpsI	GAGTC	2 cut(s)	32, 370
Psp6I	CCWGG	6 cut(s)	108, 126, 465, 486, 808, 1216
PspFI	CCCAGC	2 cut(s)	48, 141
PspGI	CCWGG	6 cut(s)	108, 126, 465, 486, 808, 1216
PspN4I	GGNNCC	6 cut(s)	140, 214, 292, 485, 858, 1043
PspOMI	GGGCCC	1 cut(s)	138
PspPI	GGNCC	9 cut(s)	124, 138, 139, 290, 459, 497, 615, 731, 1042
PsuI	RGATCY	2 cut(s)	222, 856
PvuI	CGATCG	1 cut(s)	230
RsaI	GTAC	6 cut(s)	56, 185, 418, 796, 1178, 1229
RsaNI	GTAC	6 cut(s)	55, 184, 417, 795, 1177, 1228
SacII	CCGCGG	1 cut(s)	195
Sau3AI	GATC	6 cut(s)	37, 222, 227, 237, 856, 1016
Sau96I	GGNCC	9 cut(s)	124, 138, 139, 290, 459, 497, 615, 731, 1042
ScaI	AGTACT	2 cut(s)	185, 796
SchI	GAGTC	2 cut(s)	33, 370
ScrFI	CCNGG	8 cut(s)	32, 110, 128, 133, 467, 488, 810, 1218
SduI	GDGCHC	3 cut(s)	142, 215, 574
SetI	ASST	7 cut(s)	321, 399, 653, 784, 912, 973, 1222
SfaNI	GCATC	4 cut(s)	78, 153, 414, 1126
SfiI	GGCCNNNNNGGCC	1 cut(s)	137
SfoI	GGCGCC	1 cut(s)	485
Sfr303I	CCGCGG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	290, 615
SmlI	CTYRAG	2 cut(s)	709, 798
SmoI	CTYRAG	2 cut(s)	709, 798
Sse9I	AATT	3 cut(s)	442, 956, 1204
SspDI	GGCGCC	1 cut(s)	483
SspI	AATATT	1 cut(s)	840
SspMI	CTAG	1 cut(s)	911
StyD4I	CCNGG	8 cut(s)	30, 108, 126, 131, 465, 486, 808, 1216
StyI	CCWWGG	1 cut(s)	1126
TaaI	ACNGT	5 cut(s)	421, 511, 641, 672, 1086
TaqI	TCGA	1 cut(s)	366
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	442, 956, 1204
TatI	WGTACW	3 cut(s)	183, 794, 1176
TauI	GCSGC	8 cut(s)	73, 94, 97, 125, 194, 203, 533, 1047
TfiI	GAWTC	1 cut(s)	1110
TscAI	CASTG	9 cut(s)	83, 260, 388, 426, 439, 514, 613, 868, 1091
TseFI	GTSAC	1 cut(s)	604
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	5 cut(s)	698, 707, 888, 905, 1013
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	9 cut(s)	83, 260, 388, 426, 439, 514, 613, 868, 1091
Van91I	CCANNNNNTGG	1 cut(s)	758
VpaK11BI	GGWCC	2 cut(s)	290, 615
XapI	RAATTY	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	1142
XspI	CTAG	1 cut(s)	911
ZrmI	AGTACT	2 cut(s)	185, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.