Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Forward (+)

13739748 .. 13741898

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAGCTAAACCTGGAGCCGCAACTCCAACGTATTCACCTAAAATCGTCGGAAGAAGTCGGCTTCCTATATTCAAAGATTCCGACCTCGATTGGTCTCGTCCTGATGGCCGTGGCTTCCACCAATGCCGACCCGCATTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGATGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCAGGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAATGATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGGAAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTATGATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGACCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGTCTGAAACAGTCTGCCTCAGCTTCCGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

256

Amino Acids

27.45

Weight (kDa)

4.9

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	42 - 166	4.2e-31	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	21, 135
AcoI	YGGCCR	2 cut(s)	109, 316
AcsI	RAATTY	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	76, 146, 274, 431, 711
AjiI	CACGTC	1 cut(s)	609
AjnI	CCWGG	2 cut(s)	13, 318
AluBI	AGCT	8 cut(s)	8, 288, 485, 521, 597, 640, 691, 758
AluI	AGCT	8 cut(s)	8, 288, 485, 521, 597, 640, 691, 758
Alw26I	GTCTC	2 cut(s)	102, 380
AoxI	GGCC	3 cut(s)	109, 224, 316
ApeKI	GCWGC	3 cut(s)	5, 594, 688
ApoI	RAATTY	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	2 cut(s)	30, 665
BalI	TGGCCA	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	754
BbvI	GCAGC	3 cut(s)	17, 606, 700
BccI	CCATC	5 cut(s)	101, 376, 584, 625, 653
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	15, 320
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	2 cut(s)	102, 380
BfaI	CTAG	2 cut(s)	471, 705
BisI	GCNGC	4 cut(s)	6, 21, 595, 689
BlsI	GCNGC	4 cut(s)	7, 22, 596, 690
Bme1390I	CCNGG	3 cut(s)	15, 320, 563
BmgBI	CACGTC	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	3 cut(s)	15, 320, 563
BmsI	GCATC	2 cut(s)	478, 691
BpmI	CTGGAG	2 cut(s)	36, 456
Bpu10I	CCTNAGC	1 cut(s)	754
BpuMI	CCSGG	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	112, 227, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	154, 655
Bse3DI	GCAATG	2 cut(s)	252, 690
BseBI	CCWGG	2 cut(s)	15, 320
BseDI	CCNNGG	3 cut(s)	112, 227, 319
BseGI	GGATG	2 cut(s)	587, 706
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	2 cut(s)	252, 690
BseMII	CTCAG	3 cut(s)	177, 650, 768
BseNI	ACTGG	2 cut(s)	154, 655
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	3 cut(s)	17, 606, 700
BshFI	GGCC	3 cut(s)	111, 226, 318
BsiSI	CCGG	2 cut(s)	492, 563
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	102, 380
BsmBI	CGTCTC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	111, 226, 318
Bso31I	GGTCTC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	328, 723
BspACI	CCGC	2 cut(s)	21, 135
BspANI	GGCC	3 cut(s)	111, 226, 318
BspCNI	CTCAG	3 cut(s)	178, 649, 767
BspLI	GGNNCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	2 cut(s)	252, 690
BsrI	ACTGG	2 cut(s)	154, 655
BssECI	CCNNGG	3 cut(s)	112, 227, 319
BssMI	GATC	2 cut(s)	328, 723
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	15, 320
Bst4CI	ACNGT	2 cut(s)	406, 747
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	3 cut(s)	186, 636, 754
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	587, 706
BstKTI	GATC	2 cut(s)	331, 726
BstMAI	GTCTC	2 cut(s)	102, 380
BstMBI	GATC	2 cut(s)	328, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	2 cut(s)	15, 320
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	3 cut(s)	13, 318, 561
BstV1I	GCAGC	3 cut(s)	17, 606, 700
BsuRI	GGCC	3 cut(s)	111, 226, 318
BtgI	CCRYGG	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	587, 706
BtsIMutI	CAGTG	2 cut(s)	534, 648
Cac8I	GCNNGC	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	224
CviAII	CATG	3 cut(s)	465, 613, 727
DdeI	CTNAG	3 cut(s)	186, 636, 754
DpnI	GATC	2 cut(s)	330, 725
DpnII	GATC	2 cut(s)	328, 723
EaeI	YGGCCR	2 cut(s)	109, 316
Eco130I	CCWWGG	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	13, 318
EcoRV	GATATC	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	3 cut(s)	468, 616, 730
FatI	CATG	3 cut(s)	464, 612, 726
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	6, 21, 595, 689
FokI	GGATG	2 cut(s)	594, 713
Fsp4HI	GCNGC	4 cut(s)	6, 21, 595, 689
FspBI	CTAG	2 cut(s)	471, 705
GluI	GCNGC	4 cut(s)	6, 21, 595, 689
GsuI	CTGGAG	2 cut(s)	36, 456
HaeIII	GGCC	3 cut(s)	111, 226, 318
HapII	CCGG	2 cut(s)	492, 563
Hin1II	CATG	3 cut(s)	468, 616, 730
HinfI	GANTC	2 cut(s)	80, 431
HpaII	CCGG	2 cut(s)	492, 563
HphI	GGTGA	2 cut(s)	30, 665
Hpy188I	TCNGA	4 cut(s)	53, 85, 741, 763
Hpy188III	TCNNGA	3 cut(s)	104, 428, 435
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	362, 572
HpyCH4III	ACNGT	2 cut(s)	406, 747
HpyCH4IV	ACGT	3 cut(s)	32, 389, 608
HpyCH4V	TGCA	4 cut(s)	419, 537, 612, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	3 cut(s)	186, 636, 754
HpySE526I	ACGT	3 cut(s)	32, 389, 608
Hsp92II	CATG	3 cut(s)	468, 616, 730
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	328, 723
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	3 cut(s)	17, 606, 700
LweI	GCATC	2 cut(s)	478, 691
MaeI	CTAG	2 cut(s)	471, 705
MaeII	ACGT	3 cut(s)	32, 389, 608
MaeIII	GTNAC	2 cut(s)	443, 565
MalI	GATC	2 cut(s)	330, 725
MboI	GATC	2 cut(s)	328, 723
MboII	GAAGA	2 cut(s)	66, 599
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	3 cut(s)	274, 295, 495
MluNI	TGGCCA	1 cut(s)	318
MmeI	TCCRAC	3 cut(s)	31, 53, 108
MnlI	CCTC	7 cut(s)	98, 431, 458, 565, 568, 673, 763
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	2 cut(s)	492, 563
MspR9I	CCNGG	3 cut(s)	15, 320, 563
MvaI	CCWGG	2 cut(s)	15, 320
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	2 cut(s)	328, 723
NlaIII	CATG	3 cut(s)	468, 616, 730
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	616
PaeI	GCATGC	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	80, 431
PkrI	GCNGC	4 cut(s)	7, 22, 596, 690
Psp6I	CCWGG	2 cut(s)	13, 318
PspGI	CCWGG	2 cut(s)	13, 318
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	521
SatI	GCNGC	4 cut(s)	6, 21, 595, 689
Sau3AI	GATC	2 cut(s)	328, 723
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	15, 320, 563
SfaNI	GCATC	2 cut(s)	478, 691
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	3 cut(s)	274, 295, 495
SsiI	CCGC	2 cut(s)	21, 135
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	471, 705
StyD4I	CCNGG	3 cut(s)	13, 318, 561
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	406, 747
TaiI	ACGT	3 cut(s)	35, 392, 611
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	274, 295, 495
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	80, 431
TscAI	CASTG	2 cut(s)	534, 655
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	3 cut(s)	5, 594, 688
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	2 cut(s)	333, 642
TspRI	CASTG	2 cut(s)	534, 655
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	616
XspI	CTAG	2 cut(s)	471, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.