MD02G1274400.v1.1

Exosome complex component

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
32891923 .. 32895562
3640 bp
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UTR
Exon/CDS
Intron
MD02G1274400.v1.1.491

Sequence Viewer

Length: 276 bp
ATGGAGCACACTCAGTGGAGCCATTTACCACTACTGGTGTCCCTACTGATTTATTACCATATACCAATCCAAGTCCAAACTGATCACAAAGGGTCGGACCACAAAAATTTATCTTCAGTGCTTCATAAAGCTTTAGAGGGTGCAATCATATTTGAAACTTTCCCCAAGACTATTATGGATGTTTTTGCATTGGTGTTGGAATCTATGAGCAGTAAGTTTTTCCATTGGATTTTAATATCTAAGCGTCTATTCTTTCGGCCATTTATGTTTATGTGA

Protein Analysis

92

Amino Acids

10.76

Weight (kDa)

8.15

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 9
AoxI GGCC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 9
BclI TGATCA 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 39
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 82
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 39
BssMI GATC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 12, 240
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 20, 123
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 233
CviJI RGCY 3 cut(s) 21, 131, 259
CviKI_1 RGCY 3 cut(s) 21, 131, 259
DdeI CTNAG 2 cut(s) 12, 240
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraIII CACNNNGTG 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 99
FaiI YATR 8 cut(s) 60, 62, 126, 149, 176, 206, 266, 272
FaqI GGGAC 1 cut(s) 25
FbaI TGATCA 1 cut(s) 82
FokI GGATG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 259
HgaI GACGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 143, 188
HpyF3I CTNAG 2 cut(s) 12, 240
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 4, 18
LpnPI CCDG 1 cut(s) 20
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 106
MmeI TCCRAC 2 cut(s) 75, 177
MnlI CCTC 1 cut(s) 130
MseI TTAA 1 cut(s) 233
NdeII GATC 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 233
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 9
SetI ASST 1 cut(s) 133
SgeI CNNG 3 cut(s) 47, 83, 178
SinI GGWCC 1 cut(s) 97
Sse9I AATT 1 cut(s) 106
TasI AATT 1 cut(s) 106
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 2 cut(s) 20, 123
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 2 cut(s) 20, 123
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.