Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Reverse (-)

7318961 .. 7324627

Gene Structure 5667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G104100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCCGGGAAAGGTGGAGCAACTCCGAGCACGTACTCGCCGTCTCCGACGACCCACAAGACTAAATCACTAAGCTTTGGAAACGACGACGTTCTCCGACCCGATGACCGTGAATGGCACCAATGCAGACCTGCCTTTTTCCAGATTGGTGTTGTAGCTGCTGCTGCCGGATCTGCTTATGCAGATTTTGGAAGCACCAAGGTCATTGTTTCTGTGTTTGGGCCAAGAGAGAGTAAGAAGGGAATGATGTACAGTGATATAGGACGTTTAAATTGCAATGTCAGCTATACAACTTTTGCTACCCCAGTTCGTGGACAGGGGTCGGACCACAAAGAGTTTTCTTCAATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACTTTCCCCAAGACTACTGTGGATGTTTTTGCATTGGTGTTGGAATCTGGGGGCAGTGATCTTCCTGTAGTGATATCATGTGCTAGCCTTGCCCTAGCAGATGCAGGGATAATGATGTATGACCTTGTTACGTCAGTTTCAGTGTCTTATTTGGGAAAGAACCTTGTCCTTGATCCTACTTTGGAGGAGGAAAGCCACCAAGATGGAAGCTTAATACTTACTTGTATGCCTTCTCGCGATGAGGTCACTCAACTAACCATTACTGGGGAATGGTCTACCCCAAAAATTAATAAGGGAATGAAGATTTGTATGGATGCCTGCTCAAAGTTTTCACAGATCATGAAGTCATGCTTGAAAGGACTTGATTCTGCTTTGGAAGAAGAGGATAGTAATGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

262

Amino Acids

28.02

Weight (kDa)

5.06

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	117
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	659
AccII	CGCG	1 cut(s)	621
AclWI	GGATC	2 cut(s)	178, 551
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	35, 251
AfiI	CCNNNNNNNGG	2 cut(s)	311, 648
AgsI	TTSAA	2 cut(s)	345, 739
AluBI	AGCT	5 cut(s)	75, 158, 285, 359, 594
AluI	AGCT	5 cut(s)	75, 158, 285, 359, 594
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	178, 551
AoxI	GGCC	2 cut(s)	3, 221
ApeKI	GCWGC	3 cut(s)	158, 161, 164
AseI	ATTAAT	1 cut(s)	672
AspS9I	GGNCC	2 cut(s)	221, 325
AsuC2I	CCSGG	1 cut(s)	7
AsuNHI	GCTAGC	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	145, 148, 151
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	468, 479
BfmI	CTRYAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	159, 162, 165
BlsI	GCNGC	3 cut(s)	160, 163, 166
Bme1390I	CCNGG	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	221, 325
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	7
BmrI	ACTGGG	2 cut(s)	299, 657
BmsI	GCATC	2 cut(s)	475, 688
BmtI	GCTAGC	1 cut(s)	471
BmuI	ACTGGG	2 cut(s)	299, 657
BoxI	GACNNNNGTC	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	7
BsaAI	YACGTR	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 648
Bse1I	ACTGG	2 cut(s)	305, 652
Bse3DI	GCAATG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	412, 703
BseLI	CCNNNNNNNGG	2 cut(s)	311, 648
BseMI	GCAATG	1 cut(s)	283
BseNI	ACTGG	2 cut(s)	305, 652
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	145, 148, 151
Bsh1236I	CGCG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	5, 223
BshNI	GGYRCC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	6, 168
BslI	CCNNNNNNNGG	2 cut(s)	311, 648
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	5, 223
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	170, 442, 556, 720
Bsp68I	TCGCGA	1 cut(s)	621
BspANI	GGCC	2 cut(s)	5, 223
BspFNI	CGCG	1 cut(s)	621
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	139
BspOI	GCTAGC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	178, 551
BspT107I	GGYRCC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	283
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	305, 652
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	4 cut(s)	170, 442, 556, 720
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	3 cut(s)	110, 254, 403
Bst6I	CTCTTC	1 cut(s)	759
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	469, 703
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	412, 703
BstFNI	CGCG	1 cut(s)	621
BstKTI	GATC	4 cut(s)	173, 445, 559, 723
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	4 cut(s)	170, 442, 556, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 173, 282, 473
BstPAI	GACNNNNGTC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	5
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	621
BstV1I	GCAGC	3 cut(s)	145, 148, 151
BstX2I	RGATCY	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	5, 223
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	412, 703
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	3 cut(s)	259, 445, 531
BtuMI	TCGCGA	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	469, 703
CciI	TCATGA	1 cut(s)	723
Cfr13I	GGNCC	2 cut(s)	221, 325
Csp6I	GTAC	2 cut(s)	34, 250
CviAII	CATG	3 cut(s)	462, 724, 732
CviJI	RGCY	9 cut(s)	5, 75, 158, 223, 285, 359, 471, 579, 594
CviKI_1	RGCY	9 cut(s)	5, 75, 158, 223, 285, 359, 471, 579, 594
CviQI	GTAC	2 cut(s)	34, 250
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	4 cut(s)	172, 444, 558, 722
DpnII	GATC	4 cut(s)	170, 442, 556, 720
DraI	TTTAAA	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	3 cut(s)	465, 727, 735
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FatI	CATG	3 cut(s)	461, 723, 731
FblI	GTMKAC	1 cut(s)	659
Fnu4HI	GCNGC	3 cut(s)	159, 162, 165
FokI	GGATG	2 cut(s)	419, 710
Fsp4HI	GCNGC	3 cut(s)	159, 162, 165
FspBI	CTAG	2 cut(s)	468, 479
GluI	GCNGC	3 cut(s)	159, 162, 165
HaeIII	GGCC	2 cut(s)	5, 223
HapII	CCGG	2 cut(s)	6, 168
Hin1II	CATG	3 cut(s)	465, 727, 735
HindIII	AAGCTT	3 cut(s)	73, 357, 592
HinfI	GANTC	2 cut(s)	428, 749
HpaII	CCGG	2 cut(s)	6, 168
Hpy166II	GTNNAC	2 cut(s)	314, 660
Hpy188I	TCNGA	4 cut(s)	27, 48, 98, 325
Hpy188III	TCNNGA	3 cut(s)	142, 620, 724
Hpy8I	GTNNAC	2 cut(s)	314, 660
Hpy99I	CGWCG	3 cut(s)	52, 89, 92
HpyAV	CCTTC	2 cut(s)	232, 624
HpyCH4III	ACNGT	3 cut(s)	110, 254, 403
HpyCH4IV	ACGT	4 cut(s)	32, 90, 265, 515
HpyCH4V	TGCA	6 cut(s)	126, 182, 276, 371, 416, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 173, 282, 473
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	4 cut(s)	32, 90, 265, 515
Hsp92II	CATG	3 cut(s)	465, 727, 735
Kzo9I	GATC	4 cut(s)	170, 442, 556, 720
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	3 cut(s)	145, 148, 151
LweI	GCATC	2 cut(s)	475, 688
MaeI	CTAG	2 cut(s)	468, 479
MaeII	ACGT	4 cut(s)	32, 90, 265, 515
MaeIII	GTNAC	2 cut(s)	511, 628
MalI	GATC	4 cut(s)	172, 444, 558, 722
MboI	GATC	4 cut(s)	170, 442, 556, 720
MboII	GAAGA	5 cut(s)	333, 437, 697, 773, 776
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	2 cut(s)	271, 669
MmeI	TCCRAC	4 cut(s)	71, 121, 303, 405
MnlI	CCTC	5 cut(s)	358, 562, 565, 619, 760
MseI	TTAA	3 cut(s)	269, 596, 672
MslI	CAYNNNNRTG	1 cut(s)	585
MspI	CCGG	2 cut(s)	6, 168
MspR9I	CCNGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	621
MwoI	GCNNNNNNNGC	4 cut(s)	164, 173, 282, 473
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	4 cut(s)	170, 442, 556, 720
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	3 cut(s)	465, 727, 735
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	628
NruI	TCGCGA	1 cut(s)	621
PagI	TCATGA	1 cut(s)	723
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 44
PfeI	GAWTC	2 cut(s)	428, 749
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	160, 163, 166
Ppu21I	YACGTR	1 cut(s)	33
PshAI	GACNNNNGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	221, 325
PsuI	RGATCY	1 cut(s)	170
RruI	TCGCGA	1 cut(s)	621
RsaI	GTAC	2 cut(s)	35, 251
RsaNI	GTAC	2 cut(s)	34, 250
RseI	CAYNNNNRTG	1 cut(s)	585
SaqAI	TTAA	3 cut(s)	269, 596, 672
SatI	GCNGC	3 cut(s)	159, 162, 165
Sau3AI	GATC	4 cut(s)	170, 442, 556, 720
Sau96I	GGNCC	2 cut(s)	221, 325
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	2 cut(s)	475, 688
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	585
Sse9I	AATT	2 cut(s)	271, 669
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	2 cut(s)	468, 479
StyD4I	CCNGG	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	110, 254, 403
TaiI	ACGT	4 cut(s)	35, 93, 268, 518
TasI	AATT	2 cut(s)	271, 669
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	2 cut(s)	428, 749
Tru1I	TTAA	3 cut(s)	269, 596, 672
Tru9I	TTAA	3 cut(s)	269, 596, 672
TscAI	CASTG	3 cut(s)	259, 445, 531
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	3 cut(s)	158, 161, 164
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	3 cut(s)	341, 698, 740
TspRI	CASTG	3 cut(s)	259, 445, 531
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	325
VspI	ATTAAT	1 cut(s)	672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	659
XspI	CTAG	2 cut(s)	468, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.