Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Forward (+)

26660804 .. 26664967

Gene Structure 4164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTGGAGCAACTCCGACAACCTACTCGCCGACCCCTACAACCGGGAAATCCAAATCACTCATCTTTCGAAACGACGACGTCGATTGGGTCCGAACCGACGGCCGTGATTTCCACCAATGCAGACCTGCCTTTTTCAAGACGCGTGCTGTAAACGCTGCTGCGGGATCTGCATATGCGGAATTTGGAAATACCAAGGTCATTGTTTCTGTATTTGGGCCAAGAGAGAGCAAGAAGGCAATGTTATACAGTGATATAGGCCAGTTGAATTGCAATGTTAGCTATACAACTTTTTCCACTCCAGTTCATGGACAGGGGTCAGACCACAAAGAGTTTTCTTCAATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACTTTCCCCAAGACTACTGTGGATGTTTTTGCGTTGGTGTTGGAATCTGGGGGCAGTGATCTTTCTGTAGTGATATCATGTGCCAGCCTTGCTTTAGCAGATGCAGGAATAATGATGTACGACCTTGTTGCCTCAGTCTCTGTGTCTTGTCTGGGAAAAAACCTTGTTATTGATCCTGTTTTGGAGGAGGAAAGCTACCAAGATGGAAGCTTAATGCTTGCTTGTATGCCTTCACACTATGAGGTTACTCAGCTAACTATAACAGGGGAATGGTCAACCCCAAAAGTTAACGAGGGAATGCAGATATGCCTGGATGCCTGTGCAAAGCTTGCAACAATCATGAGGGAATGCTTAAAGGGGCCTGATTCTGGTTTGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

255

Amino Acids

27.3

Weight (kDa)

4.95

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	10 - 101	1.1e-15	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	105 - 165	9.6e-07	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	136
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccII	CGCG	1 cut(s)	145
AciI	CCGC	2 cut(s)	164, 179
AclWI	GGATC	2 cut(s)	175, 548
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	44, 308, 749
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	139, 268, 342
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	6 cut(s)	282, 356, 576, 591, 634, 709
AluI	AGCT	6 cut(s)	282, 356, 576, 591, 634, 709
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	2 cut(s)	175, 548
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	4 cut(s)	103, 218, 259, 740
ApeKI	GCWGC	2 cut(s)	158, 161
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	91, 218, 740
AsuC2I	CCSGG	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	145, 148
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	2 cut(s)	90, 118
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	1 cut(s)	692
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	523
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
Bme1390I	CCNGG	2 cut(s)	46, 692
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	91, 218, 740
BmiI	GGNNCC	2 cut(s)	92, 741
BmrFI	CCNGG	2 cut(s)	46, 692
BmsI	GCATC	2 cut(s)	472, 685
BoxI	GACNNNNGTC	1 cut(s)	316
BpmI	CTGGAG	2 cut(s)	27, 285
Bpu14I	TTCGAA	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 308, 749
Bse1I	ACTGG	2 cut(s)	262, 302
Bse3DI	GCAATG	2 cut(s)	246, 280
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	409, 700
BseLI	CCNNNNNNNGG	3 cut(s)	44, 308, 749
BseMI	GCAATG	2 cut(s)	246, 280
BseMII	CTCAG	2 cut(s)	528, 644
BseNI	ACTGG	2 cut(s)	262, 302
BseRI	GAGGAG	1 cut(s)	581
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	145, 148
Bsh1236I	CGCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	105, 220, 261, 742
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	44, 308, 749
BsmAI	GTCTC	1 cut(s)	523
BsmI	GAATGC	2 cut(s)	684, 734
BsnI	GGCC	4 cut(s)	105, 220, 261, 742
Bsp119I	TTCGAA	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	167, 439, 553
BspACI	CCGC	2 cut(s)	164, 179
BspANI	GGCC	4 cut(s)	105, 220, 261, 742
BspCNI	CTCAG	2 cut(s)	527, 643
BspFNI	CGCG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	2 cut(s)	92, 741
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	175, 548
BspT104I	TTCGAA	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	246, 280
BsrI	ACTGG	2 cut(s)	262, 302
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	167, 439, 553
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	2 cut(s)	251, 400
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	4 cut(s)	147, 466, 600, 711
BstDEI	CTNAG	2 cut(s)	514, 630
BstF5I	GGATG	2 cut(s)	409, 700
BstFNI	CGCG	1 cut(s)	145
BstKTI	GATC	3 cut(s)	170, 442, 556
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	3 cut(s)	167, 439, 553
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 170, 279, 470, 710
BstNI	CCWGG	1 cut(s)	692
BstPAI	GACNNNNGTC	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	44, 690
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	2 cut(s)	145, 148
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	105, 220, 261, 742
BtsCI	GGATG	2 cut(s)	409, 700
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	256, 442
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	4 cut(s)	147, 466, 600, 711
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	720
Cfr13I	GGNCC	3 cut(s)	91, 218, 740
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	308, 459, 721
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	2 cut(s)	514, 630
DpnI	GATC	3 cut(s)	169, 441, 555
DpnII	GATC	3 cut(s)	167, 439, 553
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	690
EcoRV	GATATC	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	311, 462, 724
FatI	CATG	3 cut(s)	307, 458, 720
FauI	CCCGC	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	159, 162
FokI	GGATG	2 cut(s)	416, 707
Fsp4HI	GCNGC	2 cut(s)	159, 162
GluI	GCNGC	2 cut(s)	159, 162
GsuI	CTGGAG	2 cut(s)	27, 285
HaeIII	GGCC	4 cut(s)	105, 220, 261, 742
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	311, 462, 724
HincII	GTYRAC	2 cut(s)	657, 670
HindII	GTYRAC	2 cut(s)	657, 670
HindIII	AAGCTT	3 cut(s)	354, 589, 707
HinfI	GANTC	2 cut(s)	425, 746
HpaI	GTTAAC	1 cut(s)	670
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	154, 657, 670
Hpy188I	TCNGA	3 cut(s)	18, 95, 322
Hpy188III	TCNNGA	2 cut(s)	139, 721
Hpy8I	GTNNAC	3 cut(s)	154, 657, 670
Hpy99I	CGWCG	4 cut(s)	80, 83, 86, 104
HpyAV	CCTTC	2 cut(s)	229, 621
HpyCH4III	ACNGT	2 cut(s)	251, 400
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	8 cut(s)	123, 173, 273, 368, 485, 682, 704, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 170, 279, 470, 710
HpyF3I	CTNAG	2 cut(s)	514, 630
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	311, 462, 724
KspAI	GTTAAC	1 cut(s)	670
Kzo9I	GATC	3 cut(s)	167, 439, 553
LmnI	GCTCC	1 cut(s)	8
Lsp1109I	GCAGC	2 cut(s)	145, 148
LweI	GCATC	2 cut(s)	472, 685
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	3 cut(s)	169, 441, 555
MboI	GATC	3 cut(s)	167, 439, 553
MboII	GAAGA	1 cut(s)	330
MflI	RGATCY	1 cut(s)	167
MluCI	AATT	2 cut(s)	182, 268
MluI	ACGCGT	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	41, 402
MnlI	CCTC	7 cut(s)	355, 523, 559, 562, 616, 667, 717
MseI	TTAA	3 cut(s)	593, 669, 734
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	46, 692
Mva1269I	GAATGC	2 cut(s)	684, 734
MvaI	CCWGG	1 cut(s)	692
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	5 cut(s)	155, 170, 279, 470, 710
NciI	CCSGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	3 cut(s)	167, 439, 553
NlaIII	CATG	3 cut(s)	311, 462, 724
NlaIV	GGNNCC	2 cut(s)	92, 741
NspV	TTCGAA	1 cut(s)	70
PagI	TCATGA	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	2 cut(s)	684, 734
PfeI	GAWTC	2 cut(s)	425, 746
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	160, 163
PshAI	GACNNNNGTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	2 cut(s)	92, 741
PspPI	GGNCC	3 cut(s)	91, 218, 740
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SaqAI	TTAA	3 cut(s)	593, 669, 734
SatI	GCNGC	2 cut(s)	159, 162
Sau3AI	GATC	3 cut(s)	167, 439, 553
Sau96I	GGNCC	3 cut(s)	91, 218, 740
ScrFI	CCNGG	2 cut(s)	46, 692
SfaNI	GCATC	2 cut(s)	472, 685
SfcI	CTRYAG	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	2 cut(s)	182, 268
SsiI	CCGC	2 cut(s)	164, 179
SspI	AATATT	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	44, 690
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	251, 400
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	70, 84
TasI	AATT	2 cut(s)	182, 268
TfiI	GAWTC	2 cut(s)	425, 746
Tru1I	TTAA	3 cut(s)	593, 669, 734
Tru9I	TTAA	3 cut(s)	593, 669, 734
TscAI	CASTG	2 cut(s)	256, 442
TseI	GCWGC	2 cut(s)	158, 161
TspDTI	ATGAA	2 cut(s)	296, 338
TspRI	CASTG	2 cut(s)	256, 442
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.